BAC Information

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BAC

Clone NameB6Ng01-243K20
Chromosome3 (Build37)
Map Location 78,905,009 - 79,066,833
singlet/doubletdoublet
Overlap geneRapgef2, LOC100041741
Upstream geneLOC626479, LOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243K20.bB6Ng01-243K20.g
ACCGA052996GA052997
length1,1941,007
definitionB6Ng01-243K20.b B6Ng01-243K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,905,009 - 78,906,214)(79,065,838 - 79,066,833)
sequence
gaattctcagaaaggtttttcagatactaagtaagtcttacgtttctagg
aacaatagacatactgtacatactttaattttaaatttcttacaaccatt
ctaaaattaacacattaaaaagagaaggtgcaccagtcagtttacaaaaa
ggaggccttcaaatcaatgcatttataagcagtatttaggcttttaaaat
gcccatggaaagcactctaaaataagatggtatgttgaacatatagactt
ttactagaaatgatagtcgatagatttgtttgtgatgttggcctagaaca
agaatagtagcaattggaaacagatgatatgtctgacccgaggaagccaa
actgtatgaccaccattcccctggcgcaaccttctgcctccttctgtgga
gattgtctttaaatagaaccactcccttcagcagggggtggggcgtctgg
gacccagcaggtaaacacatttcatggttcacatgttaggaaacctaaac
tcatagattcaccaggatcctttccagggttacggatgccataactgctg
ggggaagtgattggcagccaaaccgaggaaaggagtctctaccatgtcca
gcttcctgggttgcaggtctccttagcttttcagtaatagcatgcttttg
agccatccatgttcctgtaagtaacccccaaataaaattcactggcccat
caagttagactttgttcctctatctcctgttccgtacccggggtgagtag
acacacgccatctccccaggaaagatctgtctcacaacactctgtcagcc
tagtccctgctcctttcccctcacagagcccatgctatctgctgtatctc
ccctgccccacagcacacattccgctgcaagctgtagcttcccttgccta
gagcaggacaaggtccaatctctcctcttcatcctgagctgccaagaact
agaaagtccctgccacaggagcaaaatgaatgaacgattaccagcacagg
ctcttcatctctaaatcgtctgcagttcagcaaatgacttcattagacat
gaaatcaaagggctgattttctatttcccactattatgcatacaggctaa
ctgcgtttcccaccaagtgtgttggcatactaaaccaaaggcagtagtac
tccacctcttatctaatctcactgagtgagctcactgaaatctc
gaattctagattgttgtgagttaccatgttggtgctgggaactgaaccca
gtcctcttaactattaagccattgctctagccctgatatttaataatttt
aataacatgtaagattaactgaaagctaatttgtcaccagagaccatgtt
aagcacttgttgctattggtatttttagctcttaggtttctttattcccc
ccccccccccgtcgtctctctccttccctccctccctcccttctctctgt
ctctctcgctctctttctttttttctgtgtgtgtttggttgatttttctt
tttttttctttgtttgtttgtttgtttgtttgtatgtgtacacttaattc
caccatcagagttggcatgttgaagagaactctgacgtccagttgagttg
ttcaggctttggtaccttgagctgtattaaggattgattgcctttttggt
tggtctgtgtgtggtagagaaccgtttttttttttttttttgtttttttc
tttttttctttttcttttcctacaagtaaactagccaggagtctgggact
gtggggaacagaattggcaggcttcttatttccactcctggtgaaatttc
agtatggagtctgctaacactgtctctgtgtaggggcttagctggagatc
ttggctttccagtgccagactgcagtgactagggaacagcctctcatcta
gggagccagctttctggttggaagccacagcagggtggtttgcatgggag
agtagaacattcctggcatttctaaccttttgccctagggatcctggctt
cagttgtcagcgactctgtttgtctgatgtgtgttcagagagacagttgg
atttagtgtttgaccaggattgagaaacattttattcagatagcctaaaa
cagctttgaaagattgtattcttatgtaggaagcccttgctcagatctct
ttcagtatgtgacttgagtaacacttggtggttctgggtctggtccagtc
tggtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78905009_78906214
seq2: B6Ng01-243K20.b_48_1241

seq1  GAATTCTCAGAAAGGTTTTTCAGATACTAAGTAAGTCTTACGTTTCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAAGGTTTTTCAGATACTAAGTAAGTCTTACGTTTCTAGG  50

seq1  AACAATAGACATACTGTACATACTTTAATTTTAAATTTCTTACAACCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGACATACTGTACATACTTTAATTTTAAATTTCTTACAACCATT  100

seq1  CTAAAATTAACACATTAAAAAGAGAAGGTGCACCAGTCAGTTTACAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTAACACATTAAAAAGAGAAGGTGCACCAGTCAGTTTACAAAAA  150

seq1  GGAGGCCTTCAAATCAATGCATTTATAAGCAGTATTTAGGCTTTTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCTTCAAATCAATGCATTTATAAGCAGTATTTAGGCTTTTAAAAT  200

seq1  GCCCATGGAAAGCACTCTAAAATAAGATGGTATGTTGAACATATAGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGGAAAGCACTCTAAAATAAGATGGTATGTTGAACATATAGACTT  250

seq1  TTACTAGAAATGATAGTCGATAGATTTGTTTGTGATGTTGGCCTAGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAAATGATAGTCGATAGATTTGTTTGTGATGTTGGCCTAGAACA  300

seq1  AGAATAGTAGCAATTGGAAACAGATGATATGTCTGACCCGAGGAAGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTAGCAATTGGAAACAGATGATATGTCTGACCCGAGGAAGCCAA  350

seq1  ACTGTATGACCACCATTCCCCTGGCGCAACCTTCTGCCTCCTTCTGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGACCACCATTCCCCTGGCGCAACCTTCTGCCTCCTTCTGTGGA  400

seq1  GATTGTCTTTAAATAGAACCACTCCCTTCAGCAGGGGGTGGGGCGTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTCTTTAAATAGAACCACTCCCTTCAGCAGGGGGTGGGGCGTCTGG  450

seq1  GACCCAGCAGGTAAACACATTTCATGGTTCACATGTTAGGAAACCTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGCAGGTAAACACATTTCATGGTTCACATGTTAGGAAACCTAAAC  500

seq1  TCATAGATTCACCAGGATCCTTTCCAGGGTTACGGATGCCATAACTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATTCACCAGGATCCTTTCCAGGGTTACGGATGCCATAACTGCTG  550

seq1  GGGGAAGTGATTGGCAGCCAAACCGAGGAAAGGAGTCTCTACCATGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGTGATTGGCAGCCAAACCGAGGAAAGGAGTCTCTACCATGTCCA  600

seq1  GCTTCCTGGGTTGCAGGTCTCCTTAGCTTTTCAGTAATAGCATGCTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGGGTTGCAGGTCTCCTTAGCTTTTCAGTAATAGCATGCTTTTG  650

seq1  AGCCATCCATGTTCCTGTAAGTAACCCCCAAATAAAATTCACTGGCCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCCATGTTCCTGTAAGTAACCCCCAAATAAAATTCACTGGCCCAT  700

seq1  CAAGTTAGACTTTGTTCCTCTATCTCCTGTTCCGTACCCGGGGTGAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAGACTTTGTTCCTCTATCTCCTGTTCCGTACCCGGGGTGAGTAG  750

seq1  ACACACGCCATCTCCCCAGGAAAGATCTGTCTCACAACACTCTGTCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGCCATCTCCCCAGGAAAGATCTGTCTCACAACACTCTGTCAGCC  800

seq1  TAGTCCCTGCTCCTTTCCCCTCACAGAGCCCATGCTATCTGCTGTATCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCTGCTCCTTTCCCCTCACAGAGCCCATGCTATCTGCTGTATCTC  850

seq1  CCCTGCCCCACAGCACACATTCCGCTGCAAGCTGTAGCTTCCCTTGCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCCCACAGCACACATTCCGCTGCAAGCTGTAGCTTCCCTTGCCTA  900

seq1  GAGCAGGACAAGGTCCAATCTCTCCTCTTCATCCTGAGCTGCCAAGAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGACAAGGTCCAATCTCTCCTCTTCATCCTGAGCTGCCAAGAACT  950

seq1  AGAAAGTCCCTGCCACAGGAGCAAAATGAATGAACGATTACCAGCACAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCCCTGCCACAGGAGCAAAATGAATGAACGATTACCAGCACAGG  1000

seq1  CTCTTCATCTCTAAATCGTCTGCAGTTCCAGCAAATGACTTCATTAGACA  1050
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCTTCATCTCTAAATCGTCTGCAGTT-CAGCAAATGACTTCATTAGACA  1049

seq1  TGAAATCAAAGGGCTGGTTTTCTATTTCCCACTA-TATGCATACAGCTTA  1099
      |||||||||||||||| ||||||||||||||||| |||||||||||  | 
seq2  TGAAATCAAAGGGCTGATTTTCTATTTCCCACTATTATGCATACAGGCT-  1098

seq1  AACTGCCGGTTTTCCCACAAGTGTGTTTGCATAAACTAAAACAAAAGCAG  1149
      ||||||  |||| ||  |||||||||| ||||  |||||| |||| ||||
seq2  AACTGC--GTTTCCCACCAAGTGTGTTGGCAT--ACTAAACCAAAGGCAG  1144

seq1  TAAGTTACTCGCACCTTCCCTTATCTAATCTCACTGAGTTGAGCTCACTG  1199
      ||   ||||| |||||   ||||||||||||||||||| |||||||||||
seq2  TA--GTACTC-CACCT---CTTATCTAATCTCACTGAG-TGAGCTCACTG  1187

seq1  AATTCTC  1206
      || ||||
seq2  AAATCTC  1194

seq1: chr3_79065838_79066833
seq2: B6Ng01-243K20.g_64_1070 (reverse)

seq1  CTGACCAGACTGGACCAGA-CCAG-ACCAC--AGTGTTACTCAAGTCACA  46
      ||||||||||||||||||| |||| |||||  ||||||||||||||||||
seq2  CTGACCAGACTGGACCAGACCCAGAACCACCAAGTGTTACTCAAGTCACA  50

seq1  TAACTTGAAAG-GATCTGAGC-AGGGC-TCCTACATAAG-ATACAATCTT  92
      ||   |||||| ||||||||| ||||| ||||||||||| ||||||||||
seq2  TA--CTGAAAGAGATCTGAGCAAGGGCTTCCTACATAAGAATACAATCTT  98

seq1  TC-AAGCTGTTCTTAGGCTATCTGAAT-AAATGTTTCTCAATCCTGGTCA  140
      || |||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  TCAAAGCTGTT-TTAGGCTATCTGAATAAAATGTTTCTCAATCCTGGTCA  147

seq1  AACACT-AATCCAACTGTCTCTCTGAACACACATCAGAC-AACAGAGTCG  188
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  AACACTAAATCCAACTGTCTCTCTGAACACACATCAGACAAACAGAGTCG  197

seq1  CTGACAACTGAAGCCAGGATCCCTAGGGC-AAAGGTTAGAAATGCCAGGA  237
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGACAACTGAAGCCAGGATCCCTAGGGCAAAAGGTTAGAAATGCCAGGA  247

seq1  ATGTTCTACTCTCCCATGCAAACCACCCTGCTGTGGCTTCCAACCAGAAA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTACTCTCCCATGCAAACCACCCTGCTGTGGCTTCCAACCAGAAA  297

seq1  GCTGGCTCCCTAGATGAGAGGCTGTTCCCTAGTCACTGCAGTCTGGCACT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTCCCTAGATGAGAGGCTGTTCCCTAGTCACTGCAGTCTGGCACT  347

seq1  GG-AAGCCAAGATCTCCAGCTAAGCCCCTACACAGAGACAGTGTTAGCAG  386
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCAAGATCTCCAGCTAAGCCCCTACACAGAGACAGTGTTAGCAG  397

seq1  ACTCCATACTGAAATTTCACCAGGAGTGGAAATAAGAAGCCTGCCAATTC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATACTGAAATTTCACCAGGAGTGGAAATAAGAAGCCTGCCAATTC  447

seq1  TGTTCCCCACAGTCCCAGACTCCTGGCTAGTTTACTTGTAGGAAAAGAAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCACAGTCCCAGACTCCTGGCTAGTTTACTTGTAGGAAAAGAAA  497

seq1  AAGAAAAAAAGAAAAAAACAAAAAAAAAAAAAAAAACGGTTCTCTACCAC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAGAAAAAAACAAAAAAAAAAAAAAAAACGGTTCTCTACCAC  547

seq1  ACACAGACCAACCAAAAAGGCAATCAATCCTTAATACAGCTCAAGGTACC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACCAACCAAAAAGGCAATCAATCCTTAATACAGCTCAAGGTACC  597

seq1  AAAGCCTGAACAACTCAACTGGACGTCAGAGTTCTCTTCAACATGCCAAC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGAACAACTCAACTGGACGTCAGAGTTCTCTTCAACATGCCAAC  647

seq1  TCTGATGGTGGAATTAAGTGTACACATACAAACAAACAAACAAACAAACA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGTGGAATTAAGTGTACACATACAAACAAACAAACAAACAAACA  697

seq1  AAGAAAAAAAAAGAAAAATCAACCAAACACACACAGAAAAAAAGAAAGAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAAAGAAAAATCAACCAAACACACACAGAAAAAAAGAAAGAG  747

seq1  AGCGAGAGAGACAGAGAGAAGGGAGGGAGGGAGGGAAGGAGAGAGACGAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGAGAGACAGAGAGAAGGGAGGGAGGGAGGGAAGGAGAGAGACGAC  797

seq1  GGGGGGGGGGGGGGAATAAAGAAACCTAAGAGCTAAAAATACCAATAGCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGGGGGAATAAAGAAACCTAAGAGCTAAAAATACCAATAGCA  847

seq1  ACAAGTGCTTAACATGGTCTCTGGTGACAAATTAGCTTTCAGTTAATCTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGCTTAACATGGTCTCTGGTGACAAATTAGCTTTCAGTTAATCTT  897

seq1  ACATGTTATTAAAATTATTAAATATCAGGGCTAGAGCAATGGCTTAATAG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTATTAAAATTATTAAATATCAGGGCTAGAGCAATGGCTTAATAG  947

seq1  TTAAGAGGACTGGGTTCAGTTCCCAGCACCAACATGGTAACTCACAACAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGACTGGGTTCAGTTCCCAGCACCAACATGGTAACTCACAACAA  997

seq1  TCTAGAATTC  996
      ||||||||||
seq2  TCTAGAATTC  1007