BAC Information

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BAC

Clone NameB6Ng01-243L14
Chromosome3 (Build37)
Map Location 98,272,179 - 98,273,331
singlet/doubletsinglet
Overlap genenone
Upstream geneChd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461
Downstream geneHsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243L14.bB6Ng01-243L14.g
ACCGA053032GA053033
length1,0041,175
definitionB6Ng01-243L14.b B6Ng01-243L14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatacctaatggcagaaaagcacctgaaaaaaat
gttcaacatccttaatcatcagggatatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacag
cagatgctggcgagaatgtggagaaagaggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactactggaggatcccacaatacctctcctggg
catatatccagaagatgtcccaaccggtaaggacacatgctccactatgt
tcatagcagccttatttataatagccagaagctggaaagaacccagatgc
ccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgga
gtactactcagctattaaaaagaatgaatttatggaattcctaggcaaat
ggatggacctggagggcaccatcctgagtgaggtaacccaatcacaaagg
aactctcacaatatgtactcactgataagtggatattagcccagaaactt
agcatacccaagatataagttacaatttgttaaacacattaaactcaaga
gaacgggggctggcgagatggctcagtggttaagagctccgactgctctt
ccgaaggtcctgagttcaaatcccagcaaccacatggtggctcacaacca
tccgtaatgaaatctgatgccctcttctctagtttctgaggcacagctac
agtgtacttacatataataaataaataaatcttaaaaaaaaaaaactcaa
gagaatgaagaccaaagtgtggacactttgcccccttttagaataggaaa
caaaacacccatggaaaggagttacagagaaaaaatttggaagtgtgatg
aaaggatggaccatctagtgattgccatatccagagatccatcccaggat
cagc
gaattcattttgttgttataaactcagagatcttccagattttgcctgaa
aattcactgcgtatgctgagaattctcttcagtgctaatattttctctag
atgagctgaaacctttcctaaagttgttttttgaagtggcagcagaaaga
aaagatgattggggtagggacttcagacacagatacagtctctgcattca
acttacaagttcaatttagagatggtgagagggttcagcagataatgctt
gaattctaaagccagataatcagagttcagtccttgggaccagctctatc
atgttgtcctttcacctctgcacattccttccttggttcacatgcaggag
cagataagtgcacacactagctaaataaagaaatgcatgttctgaggtcc
accttcttgtgctcctcccggtaagtttgcacaaagaatgcatatgagga
cattttgcctctcggcttcttaggatctcctttgcccatgtttagttgat
tttcctcatttccattcccagtgcccgtccggctcacgcttgccccggcg
ctgtctctatggagctcaatgtactgcaatggctgtgagagcgggagcca
gacgcagcctcctcaccctctctgctctgtaaccaaaattgtaattctgt
agcattctttctgtcagggtccctagtacaaaaaatagaatagtattcca
gtcattaggtacacactcaaaagacaatgggttgcagttagtcttgcatc
tgcatctgttcctgactttttcctcagttcacctcagatccatgatctct
ttctgatcccagaatgaccatgtgtagacacagaaagggacatagaatta
tttattttacagaaaaccacaatccatagatgaggtattgacaaatattt
attgtcttttcattgtgcttttataaagaaaagcagaattttctgaaggg
tagacattgctttgaatggggaatttgaaatcatggcgagaagctcctga
aggttacaagaaggtgcctttagggaggtttccgactgttggaacttggg
gcacagctgcttgttgaattctcttggctagggtctttcaagcgaaagct
tggtggcctggatcaagtgaactgacagcctttcaatgacttgaattaga
ctctagatcctccgtatcaagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98272179_98273331
seq2: B6Ng01-243L14.g_67_1241

seq1  GAATTCATTTTGTTGTTATAAACTCAGAGATCTTCCAGATTTTGCCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGTTGTTATAAACTCAGAGATCTTCCAGATTTTGCCTGAA  50

seq1  AATTCACTGCGTATGCTGAGAATTCTCTTCAGTGCTAATATTTTCTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTGCGTATGCTGAGAATTCTCTTCAGTGCTAATATTTTCTCTAG  100

seq1  ATGAGCTGAAACCTTTCCTAAAGTTGTTTTTTGAAGTGGCAGCAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTGAAACCTTTCCTAAAGTTGTTTTTTGAAGTGGCAGCAGAAAGA  150

seq1  AAAGATGATTGGGGTAGGGACTTCAGACACAGATACAGTCTCTGCATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGATTGGGGTAGGGACTTCAGACACAGATACAGTCTCTGCATTCA  200

seq1  ACTTACAAGTTCAATTTAGAGATGGTGAGAGGGTTCAGCAGATAATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAAGTTCAATTTAGAGATGGTGAGAGGGTTCAGCAGATAATGCTT  250

seq1  GAATTCTAAAGCCAGATAATCAGAGTTCAGTCCTTGGGACCAGCTCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGCCAGATAATCAGAGTTCAGTCCTTGGGACCAGCTCTATC  300

seq1  ATGTTGTCCTTTCACCTCTGCACATTCCTTCCTTGGTTCACATGCAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTCCTTTCACCTCTGCACATTCCTTCCTTGGTTCACATGCAGGAG  350

seq1  CAGATAAGTGCACACACTAGCTAAATAAAGAAATGCATGTTCTGAGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGTGCACACACTAGCTAAATAAAGAAATGCATGTTCTGAGGTCC  400

seq1  ACCTTCTTGTGCTCCTCCCGGTAAGTTTGCACAAAGAATGCATATGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTGTGCTCCTCCCGGTAAGTTTGCACAAAGAATGCATATGAGGA  450

seq1  CATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGAT  500

seq1  TTTCCTCATTTCCATTCCCAGTGCCCGTCCGGCTCACGCTTGCCCCGGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCATTTCCATTCCCAGTGCCCGTCCGGCTCACGCTTGCCCCGGCG  550

seq1  CTGTCTCTATGGAGCTCAATGTACTGCAATGGCTGTGAGAGCGGGAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTATGGAGCTCAATGTACTGCAATGGCTGTGAGAGCGGGAGCCA  600

seq1  GACGCAGCCTCCTCACCCTCTCTGCTCTGTAACCAAAATTGTAATTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCAGCCTCCTCACCCTCTCTGCTCTGTAACCAAAATTGTAATTCTGT  650

seq1  AGCATTCTTTCTGTCAGGGTCCCTAGTACAAAAAATAGAATAGTATTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTTTCTGTCAGGGTCCCTAGTACAAAAAATAGAATAGTATTCCA  700

seq1  GTCATTAGGTACACACTCAAAAGACAATGGGTTGCAGTTAGTCTTGCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAGGTACACACTCAAAAGACAATGGGTTGCAGTTAGTCTTGCATC  750

seq1  TGCATCTGTTCCTGACTTTTTCCTCAGTTCACCTCAGATCCATGATCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGTTCCTGACTTTTTCCTCAGTTCACCTCAGATCCATGATCTCT  800

seq1  TTCTGATCCCAGAATGACCATGTGTAGACACAG-AAGGGACATAGAATTA  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTCTGATCCCAGAATGACCATGTGTAGACACAGAAAGGGACATAGAATTA  850

seq1  TTTA-TTTACAGAAAACCACAATCCATAGATGAGGTATTGACAAATATTT  898
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTACAGAAAACCACAATCCATAGATGAGGTATTGACAAATATTT  900

seq1  ATTGTTCTTTCCATTGTGC-TTTATAAAG-AAAGCAGAATTTTCTGAAGG  946
      |||| ||||| |||||||| ||||||||| ||||||||||||||||||||
seq2  ATTG-TCTTTTCATTGTGCTTTTATAAAGAAAAGCAGAATTTTCTGAAGG  949

seq1  GTAGACA-TGCTTTGAATGGGGAA-TTGAAATCATGGCGAG-AGCT-CTG  992
      ||||||| |||||||||||||||| |||||||||||||||| |||| |||
seq2  GTAGACATTGCTTTGAATGGGGAATTTGAAATCATGGCGAGAAGCTCCTG  999

seq1  A--GGTACAAG-AGGTGC--TTA-GGAGGTT--CGACTG-TGGAAC-TGG  1032
      |  | |||||| ||||||  ||| |||||||  |||||| |||||| |||
seq2  AAGGTTACAAGAAGGTGCCTTTAGGGAGGTTTCCGACTGTTGGAACTTGG  1049

seq1  GGCACAGCTGCT--GTGAA-TCTC-TGGGTAGGGTCTTCAAGGAGAAGGC  1078
      ||||||||||||   |||| |||| ||| |||||||||  | | ||| ||
seq2  GGCACAGCTGCTTGTTGAATTCTCTTGGCTAGGGTCTTTCAAGCGAAAGC  1099

seq1  TT-GTGG-CTGGGTC-AGTG-ACTGACAAGGCTTTCAGTGACTTGATTAA  1124
      || |||| |||| || |||| |||||| || |||||| |||||||| | |
seq2  TTGGTGGCCTGGATCAAGTGAACTGAC-AGCCTTTCAATGACTTGAATTA  1148

seq1  GACTCTAAGATCCTCCGTATCAAAGAGAA  1153
      |||||| |||||||||||||| |||||||
seq2  GACTCT-AGATCCTCCGTATC-AAGAGAA  1175