BAC Information

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BAC

Clone NameB6Ng01-243M19
Chromosome3 (Build37)
Map Location 110,396,059 - 110,504,527
singlet/doubletdoublet
Overlap genenone
Upstream geneVav3, Ntng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243M19.bB6Ng01-243M19.g
ACCGA053089GA053090
length1,1021,075
definitionB6Ng01-243M19.b B6Ng01-243M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,503,414 - 110,504,527)(110,396,059 - 110,397,131)
sequence
gaattcttttttagctctgagccccatttttagtggggttatttgatttt
ctggagtccaccttcttgaattctttatatatattgggtattagtcccct
atctgattttgggtagattaagatcctttcccaatctcttggtggccttt
ttgtcttattgatgttgtcttttgccttgcagaagctttgcaattttttg
aggtcccatttgtccattctcgattttacagcacaagccattgctgttct
attcaggaatttttcctgtacccatatcttcgaggctttaccctagtttc
tcctctataagtttcagtgctctggttttatgtggagttccttaatccaa
gagcttctattttatatatttaagataagaaatagagagaggttttcata
gatgtctgaaaaagaagaaaggtaacagaaaagggttgaataataatcaa
acacaaaatgaaggttaagaaaggaaaggtgaattactgagaagacccat
gagaatggggagggttagagtggagaactgatgggcttgcatgagcaaca
acagtgtgaggaactgaagagaaattgatcaccaagggatgtgtcatctc
atggatgtgtacctaagaggactgtgtgctcttaaagccaaaggttacca
aacagctgagggcctgagacaatagaaatgcttattactgccttaaagaa
aactataggcacaacaagcatttgatggcatgttttgaaagaatttatat
gaagccattcttgatatactccttgctcatagcggagtcctttattatgg
ttaattaactttttaaaaatatatactaaagatctgagcttggtccctgg
aagccacatgatggagaatcaactctcataaattgtcctctgtcttctat
atatgtattgtggcaggcacttattccccacctcatgagaaaacacacaa
taatgaataaataaatacataaataaatgatttttaacatgacaaaatgt
tttttaaaaaaacgttttccacagtatatgaaacagccatgatgtacact
atttttacaaatacctaaaataggaatataatcttaagaaaaatgctggg
tc

gaattccacagaaaacattatattaactcactgttatttattttcataaa
ggagaagggtccctggataattgaaatccatagataattgagaaactgca
tagagcaatgtttttcaaattcaacccatagcaaattattttattggcag
tattgcctagtaacaaagttttcacatttaaattttgctttttctctttt
tcttctcacaaaatggcaaggaaaatacctaaattaacccataagtatca
aaagataaccaagagcggaaagcaaagtctaccggctcctaaatgatgga
ggccagatctcggtggctgaagcttttgtggtacaaagtcgatcttgttt
ggtattgtacttcagtaatttcaatattgcatcaaaccaaacagcaggta
tttattaatcacctactcccttcttgtgagtagaaaacacagtcatatat
tcttgctttatctgtcataacactgtatacatacagtcttgtaaaaccgt
ggctaaactacatgttgaggctcagctagagattaaaaaaaaaaaaaagg
tacctggtttcatgtttttaactttgacaagcaaaatgagtttaatacca
aaatttaaagagaaattgaataattaaagcaatatactgtcaatcggttt
ctggacagagtggggatagaggctaagaacaaaaatccttggaaatacaa
ggaggttaaagatgagatgacctttttagtattgttaaagttagaatttt
agaattcgtagacatacataaacacaccatttaaaatcttggaatattgt
cagtaattcatgcaataaacatggagagaaactcctttcaggaaactgag
tcacatctctcaatcttctcacaagttcaacttggcagatggtctactgt
gctgtgtgggacatggcaaaacagcaatactctctcccctcagatcccct
taaataaacatgtaggtaaaaaccaatacacaaaaaaatggataagaaac
tattgcaaaaaaaataatgaaataagatataaataaatggagaaatgttc
agattcacaaatagattcaccacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_110503414_110504527
seq2: B6Ng01-243M19.b_45_1146 (reverse)

seq1  GACCCCAAGCATTTTTCCTAAGGAATTTATATTCCCTATTTTAAGGTATT  50
      |||||  |||||||||| ||||    ||||||| |||||||| |||||||
seq2  GACCC--AGCATTTTTCTTAAG---ATTATATT-CCTATTTT-AGGTATT  43

seq1  TGT-AAAATAGTGTACAATCATGGCTGTTTCATAATACTGGTGAAAACCT  99
      ||| |||||||||||| |||||||||||||||| ||||||  |||||| |
seq2  TGTAAAAATAGTGTAC-ATCATGGCTGTTTCAT-ATACTGTGGAAAACGT  91

seq1  TTTTTTAAAAAACATTTTTGTCATGTTAAAAATTCATTTATTTATGTATT  149
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  TTTTTTAAAAAACA-TTTTGTCATGTTAAAAA-TCATTTATTTATGTATT  139

seq1  TATTTATTCATTTATTGTGTGTTTTTCTCATGAGGTGGGGAATAAGTGCC  199
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  TATTTATTCA-TTATTGTGTG-TTTTCTCATGAGGTGGGGAATAAGTGCC  187

seq1  TGCCACAATACATATATAGAAGACAGAGGACAATTTATGAGAGTTGATTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAATACATATATAGAAGACAGAGGACAATTTATGAGAGTTGATTC  237

seq1  TCCATCATGTGGCTTCCAGGGACCAAGCTCAGATCTTTAGTATATATTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATGTGGCTTCCAGGGACCAAGCTCAGATCTTTAGTATATATTTT  287

seq1  TAAAAAGTTAATTAACCATAATAAAGGACTCCGCTATGAGCAAGGAGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTTAATTAACCATAATAAAGGACTCCGCTATGAGCAAGGAGTAT  337

seq1  ATCAAGAATGGCTTCATATAAATTCTTTCAAAACATGCCATCAAATGCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAATGGCTTCATATAAATTCTTTCAAAACATGCCATCAAATGCTT  387

seq1  GTTGTGCCTATAGTTTTCTTTAAGGCAGTAATAAGCATTTCTATTGTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCCTATAGTTTTCTTTAAGGCAGTAATAAGCATTTCTATTGTCTC  437

seq1  AGGCCCTCAGCTGTTTGGTAACCTTTGGCTTTAAGAGCACACAGTCCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTCAGCTGTTTGGTAACCTTTGGCTTTAAGAGCACACAGTCCTCT  487

seq1  TAGGTACACATCCATGAGATGACACATCCCTTGGTGATCAATTTCTCTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACACATCCATGAGATGACACATCCCTTGGTGATCAATTTCTCTTC  537

seq1  AGTTCCTCACACTGTTGTTGCTCATGCAAGCCCATCAGTTCTCCACTCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTCACACTGTTGTTGCTCATGCAAGCCCATCAGTTCTCCACTCTA  587

seq1  ACCCTCCCCATTCTCATGGGTCTTCTCAGTAATTCACCTTTCCTTTCTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCCATTCTCATGGGTCTTCTCAGTAATTCACCTTTCCTTTCTTA  637

seq1  ACCTTCATTTTGTGTTTGATTATTATTCAACCCTTTTCTGTTACCTTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATTTTGTGTTTGATTATTATTCAACCCTTTTCTGTTACCTTTCT  687

seq1  TCTTTTTCAGACATCTATGAAAACCTCTCTCTATTTCTTATCTTAAATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCAGACATCTATGAAAACCTCTCTCTATTTCTTATCTTAAATAT  737

seq1  ATAAAATAGAAGCTCTTGGATTAAGGAACTCCACATAAAACCAGAGCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGAAGCTCTTGGATTAAGGAACTCCACATAAAACCAGAGCACT  787

seq1  GAAACTTATAGAGGAGAAACTAGGGTAAAGCCTCGAAGATATGGGTACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTATAGAGGAGAAACTAGGGTAAAGCCTCGAAGATATGGGTACAG  837

seq1  GAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAAATCGAGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAAATCGAGAAT  887

seq1  GGACAAATGGGACCTCAAAAAATTGCAAAGCTTCTGCAAGGCAAAAGACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATGGGACCTCAAAAAATTGCAAAGCTTCTGCAAGGCAAAAGACA  937

seq1  ACATCAATAAGACAAAAAGGCCACCAAGAGATTGGGAAAGGATCTTAATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAATAAGACAAAAAGGCCACCAAGAGATTGGGAAAGGATCTTAATC  987

seq1  TACCCAAAATCAGATAGGGGACTAATACCCAATATATATAAAGAATTCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAAATCAGATAGGGGACTAATACCCAATATATATAAAGAATTCAA  1037

seq1  GAAGGTGGACTCCAGAAAATCAAATAACCCCACTAAAAATGGGGCTCAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGACTCCAGAAAATCAAATAACCCCACTAAAAATGGGGCTCAGA  1087

seq1  GCTAAAAAAGAATTC  1114
      |||||||||||||||
seq2  GCTAAAAAAGAATTC  1102


seq1: chr3_110396059_110397131
seq2: B6Ng01-243M19.g_63_1137

seq1  GAATTCCACAGAAAACATTATATTAACTCACTGTTATTTATTTTCATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAAAACATTATATTAACTCACTGTTATTTATTTTCATAAA  50

seq1  GGAGAAGGGTCCCTGGATAATTGAAATCCATAGATAATTGAGAAACTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGGTCCCTGGATAATTGAAATCCATAGATAATTGAGAAACTGCA  100

seq1  TAGAGCAATGTTTTTCAAATTCAACCCATAGCAAATTATTTTATTGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAATGTTTTTCAAATTCAACCCATAGCAAATTATTTTATTGGCAG  150

seq1  TATTGCCTAGTAACAAAGTTTTCACATTTAAATTTTGCTTTTTCTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCTAGTAACAAAGTTTTCACATTTAAATTTTGCTTTTTCTCTTTT  200

seq1  TCTTCTCACAAAATGGCAAGGAAAATACCTAAATTAACCCATAAGTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCACAAAATGGCAAGGAAAATACCTAAATTAACCCATAAGTATCA  250

seq1  AAAGATAACCAAGAGCGGAAAGCAAAGTCTACCGGCTCCTAAATGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAACCAAGAGCGGAAAGCAAAGTCTACCGGCTCCTAAATGATGGA  300

seq1  GGCCAGATCTCGGTGGCTGAAGCTTTTGTGGTACAAAGTCGATCTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATCTCGGTGGCTGAAGCTTTTGTGGTACAAAGTCGATCTTGTTT  350

seq1  GGTATTGTACTTCAGTAATTTCAATATTGCATCAAACCAAACAGCAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGTACTTCAGTAATTTCAATATTGCATCAAACCAAACAGCAGGTA  400

seq1  TTTATTAATCACCTACTCCCTTCTTGTGAGTAGAAAACACAGTCATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATCACCTACTCCCTTCTTGTGAGTAGAAAACACAGTCATATAT  450

seq1  TCTTGCTTTATCTGTCATAACACTGTATACATACAGTCTTGTAAAACCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTATCTGTCATAACACTGTATACATACAGTCTTGTAAAACCGT  500

seq1  GGCTAAACTACATGTTGAGGCTCAGCTAGAGATTAAAAAAAAAAAAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACTACATGTTGAGGCTCAGCTAGAGATTAAAAAAAAAAAAAAGG  550

seq1  TACCTGGTTTCATGTTTTTAACTTTGACAAGCAAAATGAGTTTAATACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGTTTCATGTTTTTAACTTTGACAAGCAAAATGAGTTTAATACCA  600

seq1  AAATTTAAAGAGAAATTGAATAATTAAAGCAATATACTGTCAATCGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAGAGAAATTGAATAATTAAAGCAATATACTGTCAATCGGTTT  650

seq1  CTGGACAGAGTGGGGATAGAGGCTAAGAACAAAAATCCTTGGAAATACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGAGTGGGGATAGAGGCTAAGAACAAAAATCCTTGGAAATACAA  700

seq1  GGAGGTTAAAGATGAGATGACCTTTTTAGTATTGTTAAAGTTAGAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTAAAGATGAGATGACCTTTTTAGTATTGTTAAAGTTAGAATTTT  750

seq1  AGAATTCGTAGACATACATAAACACACCATTTAAAATCTTGGAATATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCGTAGACATACATAAACACACCATTTAAAATCTTGGAATATTGT  800

seq1  CAGTAATTCATGCAATAAACATGGAGAGAAACTCCTTTCAGGAAACTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTCATGCAATAAACATGGAGAGAAACTCCTTTCAGGAAACTGAG  850

seq1  TCACATCTCTCAATCTTCTCACAAGTTCAACTTGGCAGATGGTCTACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTCTCAATCTTCTCACAAGTTCAACTTGGCAGATGGTCTACTGT  900

seq1  GCTGTGT-GGACATGGCAAAACAGCAATACTCTCTCCCCTCAGATCCCCT  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGGGACATGGCAAAACAGCAATACTCTCTCCCCTCAGATCCCCT  950

seq1  TAAATAAACATGTAGGTAAAAACCAATACACAAAAAAATGGATAGAAAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TAAATAAACATGTAGGTAAAAACCAATACACAAAAAAATGGATAAGAAAC  1000

seq1  TATTGC-AAAAAAATAATGAAATAAGATATAAATAAATGGAGAAATGTTT  1048
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  TATTGCAAAAAAAATAATGAAATAAGATATAAATAAATGGAGAAATG-TT  1049

seq1  CAGATTCACAAATAGATTCA-CACAT  1073
      |||||||||||||||||||| |||||
seq2  CAGATTCACAAATAGATTCACCACAT  1075


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