BAC Information

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BAC

Clone NameB6Ng01-244F20
Chromosome3 (Build37)
Map Location 96,186,854 - 96,187,930
singlet/doubletsinglet
Overlap genenone
Upstream gene4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
Downstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244F20.bB6Ng01-244F20.g
ACCGA053518GA053519
length1,1761,042
definitionB6Ng01-244F20.b B6Ng01-244F20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctggtaaatctaatagaggacgttgacagatctcacaatgatt
aataagattattcaccaatgggttccctgcagcctggaatcccattgcct
tccttgttgcctaaggaatggtctatcatagtgattgatctaaaagatta
ttttttcacaattcctctacatgaacacaataaggagaggtttgctttct
tagtacctacctttaatagacgttgtccaataaaaagatatcattggaaa
gtcctaccaaaaggaatgttaaatagtcccaccttatgccaatattttgt
acccaaagaaatgatatttggcaaatggatgtgttccattttacagagtt
tggtaaactgaaatatgtgcaccacactatagacacatatctaggatttc
aatgggcaaccgccttagctccagaaaaggctgattctgtcattaaacat
ttattagacgttatggccattatgggaatacccacacaaattaaagtgga
cagaggtctggcatatgtctctaataggatgaagcagttttctatataat
ataaaacatgttacaggcataccacacaatcctacaggacaagcaatcga
ggagagatctaatcacactgtaaaggagatgcttaacaggcagaggggca
acaaaaccccagacatagattacaacatgctttattaaccttaaggcttt
caaatgctaatgaacaaaaaaagtatggctgctgaaagagattgaattgt
gggaaaatctgctgaactaaaccagcctgtttattttaaaggatgttctg
acatcagaatggaaaatgggaaatgtgttacgctgggggaggggctatgc
ctatgttcccacgggaaaagaaaagctgtgggtttcctttcaagttgata
aaatcaggacatgagggctggagagatgactcagtggttaagagcattta
aggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatccg
tatgagatctgacgccctcttctggtgcagctgaagacgctacagtggta
cttcgatataatattaagaatcttaaaaaaaaaagaccggtggtggtgtg
ccacactttaatccagcactcaaggagcaagtcaggcgaattcttcagaa
cagccaagtctatctgagaaaacgct
gaattctcgcctcccacgcgggtgacccgggttcgattcccggccaatgc
agtacctctctgttttggcccccctctctgccttcagtgtactcttttgg
gaccaggacccaagtccatcttttccggctctttttggtaacaactactt
gatttgcggtggcacaagcaggaaagtactgtcttatgtatcaaggaaac
cagggacaaacttaagaatatcgaatattgctactacagctgctcagtta
tttgcaaggttttgtttccgttcagacaccttcccttgaggattttattc
tcatggcaagagatagcttcacaccaatattctaggccaggaaaagatat
gatgggcaggcagaaggtgttcagggaagaatgacagccgaaagtttctg
cctggctgctttagactgtaactgagttatgtggtgacttctggctggaa
gatagaagggagtgactttcaggtttgttggggcattccgcagtcaggca
ggaggatctctgtgaattcctggtcagcctaacttatataaggaggaggt
cagcctaatttatatagcgatctctagcccagctatataaatagtgagac
cctgtcttaaaaaaaaaaaaaaaaaagaaaaagaaaaaaagaaaaagaaa
aaaaaaaaagcaatcaaaaaacggttttcacccctagggatcctgcctga
ggtttctcagtatcgctgcactgcagcatttgagtaagaagtcaggtttc
caacgactcaccagcgaacattccttttgtgggaagaccactgcttactt
aatttgaggcttctgcgaagactaggtttcatcaagaaattctctaataa
ggagcaaaagagacggctcagaatgagagctcttcgaagatccagtgtga
ctccacacacacagactgtctcgatctttgctccgtgggtcgcgcagcgt
cccaacgagcagggagataacaacccttacactctacaatgatttccctc
tggtattttgtaccaatttaggaagtgcgaacgcagctctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96186854_96187930
seq2: B6Ng01-244F20.g_67_1108

seq1  GAATTCTCGCCTCCCACGCGGGTGACCCGGGTTCGATTCCCGGCCAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGCCTCCCACGCGGGTGACCCGGGTTCGATTCCCGGCCAATGC  50

seq1  AGTACCTCTCTGTTTTGGCCCCCCTCTCTGCCTTCAGTGTACTCTTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTCTCTGTTTTGGCCCCCCTCTCTGCCTTCAGTGTACTCTTTTGG  100

seq1  GACCAGGACCCAAGTCCATCTTTTCCGGCTCTTTTTGGTAACAACTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGACCCAAGTCCATCTTTTCCGGCTCTTTTTGGTAACAACTACTT  150

seq1  GATTTGCGGTGGCACAAGCAGGAAAGTACTGTCTTATGTATCAAGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCGGTGGCACAAGCAGGAAAGTACTGTCTTATGTATCAAGGAAAC  200

seq1  CAGGGACAAACTTAAGAATATCGAATATTGCTACTACAGCTGCTCAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAAACTTAAGAATATCGAATATTGCTACTACAGCTGCTCAGTTA  250

seq1  TTTGCAAGGTTTTGTTTCCGTTCAGACACCTTCCCTTGAGGATTTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGGTTTTGTTTCCGTTCAGACACCTTCCCTTGAGGATTTTATTC  300

seq1  TCATGGCAAGAGATAGCTTCACACCAATATTCTAGGCCAGGAAAAGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAAGAGATAGCTTCACACCAATATTCTAGGCCAGGAAAAGATAT  350

seq1  GATGGGCAGGCAGAAGGTGTTCAGGGAAGAATGACAGCCGAAAGTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCAGGCAGAAGGTGTTCAGGGAAGAATGACAGCCGAAAGTTTCTG  400

seq1  CCTGGCTGCTTTAGACTGTAACTGAGTTATGTGGTGACTTCTGGCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGCTTTAGACTGTAACTGAGTTATGTGGTGACTTCTGGCTGGAA  450

seq1  GATAGAAGGGAGTGACTTTCAGGTTTGTTGGGGCATTCCGCAGTCAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGGGAGTGACTTTCAGGTTTGTTGGGGCATTCCGCAGTCAGGCA  500

seq1  GGAGGATCTCTGTGAATTCCTGGTCAGCCTAACTTATATAAGGAGGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATCTCTGTGAATTCCTGGTCAGCCTAACTTATATAAGGAGGAGGT  550

seq1  CAGCCTAATTTATATAGCGATCTCTAGCCCAGCTATATAAATAGTGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAATTTATATAGCGATCTCTAGCCCAGCTATATAAATAGTGAGAC  600

seq1  CCTGTCTTAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAAGAAAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAAGAAAAAGAAA  650

seq1  AAAAAAAAAGCAATCAAAAAACGGTTTTCACCCCTAGGGATCCTGCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGCAATCAAAAAACGGTTTTCACCCCTAGGGATCCTGCCTGA  700

seq1  GGTTTCTCAGTATCGCTGCACTGCAGCATTTGAGTAAGAAGTCAGGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCAGTATCGCTGCACTGCAGCATTTGAGTAAGAAGTCAGGTTTC  750

seq1  CAACGACTCACCAGCGAACATTCCTTTTGTGGGAAGACCACTGCTTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGACTCACCAGCGAACATTCCTTTTGTGGGAAGACCACTGCTTACTT  800

seq1  AATTTGAGGCTTCTGCGAAGACTAGGTTTCATCAAGAAATTCTCTAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGGCTTCTGCGAAGACTAGGTTTCATCAAGAAATTCTCTAATAA  850

seq1  GGAGCAAAAGAGACGGCTCAGAATGAGAGCTCTTCGAAGAATCCAGGTGT  900
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  GGAGCAAAAGAGACGGCTCAGAATGAGAGCTCTTCGAAG-ATCCA-GTGT  898

seq1  GACTCCCAACAACCACACAAGAACTGTCTTCCGATCTTTGCTCCCGGTGG  950
      ||||||  |||  ||||||   |||||||  |||||||||||||  ||||
seq2  GACTCC--ACA--CACACA--GACTGTCT--CGATCTTTGCTCC--GTGG  938

seq1  GTCCGCGCAGCGTCCCAAACAGAGGCAGGGGAGATAAACAAAACCCTTAC  1000
      || |||||||||||||||  |   ||| ||||||||   | |||||||||
seq2  GT-CGCGCAGCGTCCCAACGA---GCA-GGGAGATA---ACAACCCTTAC  980

seq1  AAACTCTTACCAATGATTTCCCTCTTGGGTATTTTTTGGTAACAAATTAT  1050
        |||||   |||||||||||||||  ||||||||   ||| ||| ||  
seq2  --ACTCT--ACAATGATTTCCCTCT--GGTATTTT---GTACCAATTT--  1019

seq1  AAGGAAAAAGTGCGAACGCAGCTCTAA  1077
       |||   ||||||||||||||||||||
seq2  -AGG---AAGTGCGAACGCAGCTCTAA  1042