BAC Information

Click to search

BAC

Clone NameB6Ng01-245B19
Chromosome3 (Build37)
Map Location 106,333,253 - 106,334,435
singlet/doubletsinglet
Overlap geneCept1
Upstream geneKcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d
Downstream geneTmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245B19.bB6Ng01-245B19.g
ACCGA054080GA054081
length1,1941,173
definitionB6Ng01-245B19.b B6Ng01-245B19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcaacaaattagaaagggcgatctgcaaattcatctggaataa
caaaaacctaggatagcaaaaacacttctcaaggataaaagaacctctgg
tggaatcaccatgcctgacctaaagctgtactaagagcaattgtgataaa
atcttcatggtactggtacagcgtcagacaagtagaccaatggaatagaa
atgaagaccccgaaatgaacctacacatgtatgctcacttgatatttgac
aagggagctaaaactatccagtggaaaaaagacagcattttcaacaaatg
gtgctggcacaactggcagttatcatgtaggagaatgctaattgatccat
tcctatctccttgtactaacatcaaatctaagtgggtaaatgaactccac
ataaaaccagagacagtgaaacttatagaggagaaagtggggaaaagact
cgaagatggtcacaggggaaaaattcctgaatagaacagcaatggcttgt
gctgtaacattgagaatagacaaatgggacctcataaaattgcaaagctt
ctttaaggcaaaagacactgtcaataagacaaaaaggccaccaacagact
gggaagggatctttaactatcctaaatcagatagtggactgatatccaat
atatatatataaagaactcaagaaggtggactccagaaatcaaataaccc
cattaaaaaaatgggatcagagctaaataaagaattctcacctgagtaat
accgaatggctaataagcacctgaaaaaaaatgttcaacatccttaatca
tcagggaaatgcaaatcaaaacaacactgagattccacctcacaccagtc
agaatggctaagatcaaaaattcatgtgacagcagatgctgtcaaggatg
tggattaaagaagaacattcctctatttttggtaggattgcaagcttata
caaccactatggaaatctgtctggcggttcctcagaaagttgggacatag
tactactggaggatcctgcatacctctctgggtataagatccagaagatg
ttccaactgtagaagacacatgttccaccttgttcatagaagcctattta
taatagcaaagctgtaagaccgatgccccctcaacgagatggaccggatg
tagttattttatacaatgtggagtacctaccctcatgctatata
gaattctcaaaacatgttcaagtgttttagttgctttgaaaaactttgct
tcagctaaatgacctaaaaaatcattaaaaaaaaaaaaaagaaagaaaga
aagaaaataagtcgttgaaattatggtgtaaaaaatacagaaatatcaca
taactgaaaagagattatctgtatctcatctaaggtgattttcagctcta
tagattccgtttagttttcattctcattttcttctgcagtttttgtggtt
cttggaacttgtattgcagtacaacttgggacaaatcctgactggatgtt
tttttgttgttttgctgggacattcatgttctattgtgcacactggcaaa
catatgtttctggaacattgcgatttggaatgtaagtaatacttaatggt
gattttgttgctttctaatatggagaatattgcttatagatttaagtatt
aagaattgatcaaatcactaaactaacctgtttttaaagtaaactaaata
tttaaaattatttttttgtcatatgcctctctgtattcctttggaaatga
agtgccagaatcatacagtaagcattttggaaggataataaaaagcagta
ggccctcactcatcttcacaggtctttacaaatttacttttttatctaac
tgtctttttatctaattccatatcttattttgtgatataaaacttatttt
caagaaagagtttctgaactggagcgatgggctcagtggttaagagcatg
gctgctcttacagagaacctcagttcagttcctagtactcacccataagt
gcagctccatcatatctgaacccgttttctaaatcatcacatgattaaaa
tagtttggggctttgtttgtagaaatgggagagtttaaatactgtggttt
aattacattttagtgttttatactgttttatttacaattctacaaaagaa
taatcttctaataatatgtttgatactgcaatatttttcctgccagcaaa
tatctgagaaattacaaattggaatacgtataaaatttttgacctgaatg
ggagagtttgcacctgccgaatcagttcttccatgatgatattgatgtat
gaataatgtaccagtctagatgtgactaggaatgcttcactatcagattg
gttttcacttcctttgtttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106333253_106334435
seq2: B6Ng01-245B19.g_67_1239 (reverse)

seq1  AAACAAAACAAAGAAATGAAAAACAAAACCTGGATAGTGAAAAGCATCCT  50
      |||||||  || ||| |||||| |  || || |||||||  |||||| | 
seq2  AAACAAACAAAGGAAGTGAAAACC--AATCT-GATAGTG--AAGCATTCC  45

seq1  TAGTCACATTCTAAGACTGGGTTACATTAATCATACATCATTAATCATCA  100
      |||||||| ||| |||||||  ||||||| |||||||||| | |||||||
seq2  TAGTCACA-TCT-AGACTGG--TACATTATTCATACATCAAT-ATCATCA  90

seq1  TGGAAAGGACTGA-TCGGCAGGTGCAAACTCT-CCATTCAGGTCAAAAAT  148
      ||| ||| ||||| |||||||||||||||||| |||||||||||||||||
seq2  TGG-AAGAACTGATTCGGCAGGTGCAAACTCTCCCATTCAGGTCAAAAAT  139

seq1  TTTATACGTATTCC-ATTTGTAATTTCTCAGATATTTTGCTGGCAGGAAA  197
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  TTTATACGTATTCCAATTTGTAATTTCTCAGATA-TTTGCTGGCAGGAAA  188

seq1  AATATTGCAGTATCAAACATATTATTAGAAGATTATTCTTTTGTAGAATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGCAGTATCAAACATATTATTAGAAGATTATTCTTTTGTAGAATT  238

seq1  GTAAATAAAACAGTATAAAACACTAAAATGTAATTAAACCACAGTATTTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAAACAGTATAAAACACTAAAATGTAATTAAACCACAGTATTTA  288

seq1  AACTCTCCCATTTCTACAAACAAAGCCCCAAACTATTTTTAATCATGTGA  347
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACTCTCCCATTTCTACAAACAAAGCCCCAAACTA-TTTTAATCATGTGA  337

seq1  TGATTTAGAAAACGGGTTCAGATATGATGGAGCTGCACTTATGGGTGAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGAAAACGGGTTCAGATATGATGGAGCTGCACTTATGGGTGAGT  387

seq1  ACTAGGAACTGAACTGAGGTTCTCTGTAAGAGCAGCCATGCTCTTAACCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAACTGAACTGAGGTTCTCTGTAAGAGCAGCCATGCTCTTAACCA  437

seq1  CTGAGCCCATCGCTCCAGTTCAGAAACTCTTTCTTGAAAATAAGTTTTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCATCGCTCCAGTTCAGAAACTCTTTCTTGAAAATAAGTTTTAT  487

seq1  ATCACAAAATAAGATATGGAATTAGATAAAAAGACAGTTAGATAAAAAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAAATAAGATATGGAATTAGATAAAAAGACAGTTAGATAAAAAAG  537

seq1  TAAATTTGTAAAGACCTGTGAAGATGAGTGAGGGCCTACTGCTTTTTATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGTAAAGACCTGTGAAGATGAGTGAGGGCCTACTGCTTTTTATT  587

seq1  ATCCTTCCAAAATGCTTACTGTATGATTCTGGCACTTCATTTCCAAAGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCAAAATGCTTACTGTATGATTCTGGCACTTCATTTCCAAAGGA  637

seq1  ATACAGAGAGGCATATGACAAAAAAATAATTTTAAATATTTAGTTTACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGAGGCATATGACAAAAAAATAATTTTAAATATTTAGTTTACTT  687

seq1  TAAAAACAGGTTAGTTTAGTGATTTGATCAATTCTTAATACTTAAATCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAGGTTAGTTTAGTGATTTGATCAATTCTTAATACTTAAATCTA  737

seq1  TAAGCAATATTCTCCATATTAGAAAGCAACAAAATCACCATTAAGTATTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATATTCTCCATATTAGAAAGCAACAAAATCACCATTAAGTATTA  787

seq1  CTTACATTCCAAATCGCAATGTTCCAGAAACATATGTTTGCCAGTGTGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTCCAAATCGCAATGTTCCAGAAACATATGTTTGCCAGTGTGCA  837

seq1  CAATAGAACATGAATGTCCCAGCAAAACAACAAAAAAACATCCAGTCAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAACATGAATGTCCCAGCAAAACAACAAAAAAACATCCAGTCAGG  887

seq1  ATTTGTCCCAAGTTGTACTGCAATACAAGTTCCAAGAACCACAAAAACTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCCAAGTTGTACTGCAATACAAGTTCCAAGAACCACAAAAACTG  937

seq1  CAGAAGAAAATGAGAATGAAAACTAAACGGAATCTATAGAGCTGAAAATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAAATGAGAATGAAAACTAAACGGAATCTATAGAGCTGAAAATC  987

seq1  ACCTTAGATGAGATACAGATAATCTCTTTTCAGTTATGTGATATTTCTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGATGAGATACAGATAATCTCTTTTCAGTTATGTGATATTTCTGT  1037

seq1  ATTTTTTACACCATAATTTCAACGACTTATTTTCTTTCTTTCTTTCTTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTACACCATAATTTCAACGACTTATTTTCTTTCTTTCTTTCTTTT  1087

seq1  TTTTTTTTTTAATGATTTTTTAGGTCATTTAGCTGAAGCAAAGTTTTTCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAATGATTTTTTAGGTCATTTAGCTGAAGCAAAGTTTTTCA  1137

seq1  AAGCAACTAAAACACTTGAACATGTTTTGAGAATTC  1183
      ||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTAAAACACTTGAACATGTTTTGAGAATTC  1173