BAC Information

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BAC

Clone NameB6Ng01-245K15
Chromosome14 (Build37)3 (Build37)
Map Location 94,655,128 - 94,655,319158,505,703 - 158,506,771
singlet/doubletsingletsinglet
Overlap geneLOC100043356
Upstream genePcdh9
Downstream geneLOC100043783, LOC677613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245K15.bB6Ng01-245K15.g
ACCGA054491GA054492
length8291,074
definitionB6Ng01-245K15.b B6Ng01-245K15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,655,128 - 94,655,319)(158,505,703 - 158,506,771)
sequence
gaattcttcattctttagagtatttgttatttctgactttcccataccgt
cacatatttatgctatctactggttccccaattaataagttttaattcaa
caatataatgaattgtaatggctgaataataagacttattgtagttttag
tgctaagattacaacgattcagaacaaaatagaaggtaaaaccagtggtt
ctgaaggcagaaggatataatgaatggtaaaaatgcagctagagtagatg
agtctcagttgctacaacctaataagacaaacagagagaggatggaacct
ttaaaaactcatctaacaggtggatacttcattcgtccttagaatagggg
acaaaatacccatggaaggagttacagagacaaagtttggagctaaggcg
aaaggatggaccatccagagactaccccacacggggatccatcccataat
cagccaccaaacccagacactattgcatatgccagcaagattttgctgac
gggaccctgatatagctgtcttgtatgaggctatgccagtgcctggcaaa
tacagaagtggatgctcacagtcatctataggatggagcacagggccccc
aatggaggcgctagagaaagtacccaagggactaaaggggtctgcaaccc
tataggtggaacaacaatatgaactaaccagtacccccagagttcatgtc
tctagctgcatatgtagcagaagatggcctagttggccatcattgggaag
agaggccccttggtcttgcaaactttaaatgccccagtataggggaatgc
cagagcccaagaagtgggagtgggtgggt

gaattctttaagtagaaatgaaatagtggcttctgattggtaaaatctgg
ctgtagtttcattggtttctgactgataaatttcatttgtagtggagtta
gtagtttctcaaaagctaagatgattttttttctaagactgtgtttattc
actctatcttagatttcagcttacttaggtatgaactctaggcattggtc
ttgtgaccaccaatttattattattattattattattattattatttatt
attattattattattcctgttgaaacataccagttaaattataatacttt
aaaaatgtcttcaatgagtatgaacttctgaaatctgtaatctcctattt
accagaattggcagggttgtcccttttctttcattgccttgggacagagc
ccatttctttcatctttcccttctttcttagaattcctggtgaccaagga
agaaggatgtgatacctctttggttagaaatgatgactaggctattttct
ggtaagagacatttttctctttccctatatggtctttgtcttttgtcctt
gtctttttagatactatgtactccagttaggccaaaggcatttccttgct
ttaccccttggtagaagcttggttaatttctggttcggttaatgtatgga
gcaaaccctctgtttttaatctatccataacattaactagagtcccttgt
gtgcttacagtgtgaagttgaaatatcaatcactttatttcagatcaatt
ttataacttagacttgactagctgcttcataagcttttcatctgagtctt
tttatttattaatcattttatttgtttgcacttcaaatgatatcccccct
ttcttgttatcccttcacacctcccatcccattccccatattcccctccc
ctttgcctctatgaggtgttcctccaccaactcacccacaagtgcctcat
gaatttagcctccccgaacactggggcatcaagcctccataggactaagg
gcctcccctcccactgatattcagagaagttcatttcttctgctacacgt
gtattctgggagctatgggagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94655128_94655319
seq2: B6Ng01-245K15.b_656_874 (reverse)

seq1  ACCCCCCCACTCCCACTTCTT-GGCCCTAGTGTTCCCCTATAGTGAGGCA  49
      |||| |||||||||||||||| ||| || |  |||||||||| || ||||
seq2  ACCCACCCACTCCCACTTCTTGGGCTCTGGCATTCCCCTATACTGGGGCA  50

seq1  TATAAAGTTTGCAAGACCAACGGGCCTCTCTTTCCACTGATGGTCCACTA  99
      | |||||||||||||||||| ||||||||||| ||| |||||| | ||||
seq2  TTTAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCAACTA  100

seq1  GGCCATCTTCTGATACATATGCAGCTAGAAACATGATCTCCGGGGGGGGG  149
      |||||||||||| |||||||||||||||| |||||| |||         |
seq2  GGCCATCTTCTGCTACATATGCAGCTAGAGACATGAACTC--------TG  142

seq1  GGGGTACTGGTTAGTTCATATTGT--------------------------  173
      ||||||||||||||||||||||||                          
seq2  GGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCC  192

seq1  --------CCTTGGGTACTTTCTCTAG  192
              |||||||||||||||||||
seq2  CTTTAGTCCCTTGGGTACTTTCTCTAG  219


seq1: chr3_158505703_158506771
seq2: B6Ng01-245K15.g_66_1139

seq1  GAATTCTTTAAGTAGAAATGAAATAGTGGCTTCTGATTGGTAAAATCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGTAGAAATGAAATAGTGGCTTCTGATTGGTAAAATCTGG  50

seq1  CTGTAGTTTCATTGGTTTCTGACTGATAAATTTCATTTGTAGTGGAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTTCATTGGTTTCTGACTGATAAATTTCATTTGTAGTGGAGTTA  100

seq1  GTAGTTTCTCAAAAGCTAAGATGATTTTTTTTCTAAGACTGTGTTTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTCTCAAAAGCTAAGATGATTTTTTTTCTAAGACTGTGTTTATTC  150

seq1  ACTCTATCTTAGATTTCAGCTTACTTAGGTATGAACTCTAGGCATTGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATCTTAGATTTCAGCTTACTTAGGTATGAACTCTAGGCATTGGTC  200

seq1  TTGTGACCACCAATTTATTATTATTATTATTATTATTATTATTATTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCACCAATTTATTATTATTATTATTATTATTATTATTATTTATT  250

seq1  ATTATTATTATTATTCCTGTTGAAACATACCAGTTAAATTATAATACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTCCTGTTGAAACATACCAGTTAAATTATAATACTTT  300

seq1  AAAAATGTCTTCAATGAGTATGAACTTCTGAAATCTGTAATCTCCTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTCTTCAATGAGTATGAACTTCTGAAATCTGTAATCTCCTATTT  350

seq1  ACCAGAATTGGCAGGGTTGTCCCTTTTCTTTCATTGCCTTGGGACAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATTGGCAGGGTTGTCCCTTTTCTTTCATTGCCTTGGGACAGAGC  400

seq1  CCATTTCTTTCATCTTTCCCTTCTTTCTTAGAATTCCTGGTGACCAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTTTCATCTTTCCCTTCTTTCTTAGAATTCCTGGTGACCAAGGA  450

seq1  AGAAGGATGTGATACCTCTTTGGTTAGAAATGATGACTAGGCTATTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATGTGATACCTCTTTGGTTAGAAATGATGACTAGGCTATTTTCT  500

seq1  GGTAAGAGACATTTTTCTCTTTCCCTATATGGTCTTTGTCTTTTGTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGACATTTTTCTCTTTCCCTATATGGTCTTTGTCTTTTGTCCTT  550

seq1  GTCTTTTTAGATACTATGTACTCCAGTTAGGCCAAAGGCATTTCCTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTAGATACTATGTACTCCAGTTAGGCCAAAGGCATTTCCTTGCT  600

seq1  TTACCCCTTGGTAGAAGCTTGGTTAATTTCTGGTTCGGTTAATGTATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCTTGGTAGAAGCTTGGTTAATTTCTGGTTCGGTTAATGTATGGA  650

seq1  GCAAACCCTCTGTTTTTAATCTATCCATAACATTAACTAGAGTCCCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCTCTGTTTTTAATCTATCCATAACATTAACTAGAGTCCCTTGT  700

seq1  GTGCTTACAGTGTGAAGTTGAAATATCAATCACTTTATTTCAGATCAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTACAGTGTGAAGTTGAAATATCAATCACTTTATTTCAGATCAATT  750

seq1  TTATAACTTAGACTTGACTAGCTGCTTCATAAGCTTTTCATCTGAGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTTAGACTTGACTAGCTGCTTCATAAGCTTTTCATCTGAGTCTT  800

seq1  TTTATTTATTAATCATTTTATTTGTTTGCACTTCAAATGATATCCCCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTAATCATTTTATTTGTTTGCACTTCAAATGATATCCCCCCT  850

seq1  TTCTTGTTATCCCTTCACACCTCCCATCCCATTCCCCATATTCCCCTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTATCCCTTCACACCTCCCATCCCATTCCCCATATTCCCCTCCC  900

seq1  CTTTGCCTCTATGAGGGTGTTCCTCCACCAACTCACCCACAAGTGCCTCA  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTCTATGA-GGTGTTCCTCCACCAACTCACCCACAAGTGCCTCA  949

seq1  TGAATTTAGCCTCCCCGAACACTGGGGCATCAAGCCTCCATAGGACTAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTAGCCTCCCCGAACACTGGGGCATCAAGCCTCCATAGGACTAAG  999

seq1  GGCCTCCCCTCCCACTGATA-TCAGAGAAGTCCATT--CTCTGCTACACG  1047
      |||||||||||||||||||| |||||||||| ||||   |||||||||||
seq2  GGCCTCCCCTCCCACTGATATTCAGAGAAGTTCATTTCTTCTGCTACACG  1049

seq1  TGTA-TCT-GGAGCTAT-GGAGCCT  1069
      |||| ||| |||||||| |||||||
seq2  TGTATTCTGGGAGCTATGGGAGCCT  1074


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