BAC Information

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BAC

Clone NameB6Ng01-245P12
Chromosome18 (Build37)3 (Build37)
Map Location 40,417,342 - 40,417,64049,026,485 - 49,027,666
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneKctd16, EG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245P12.bB6Ng01-245P12.g
ACCGA054715GA054716
length1641,180
definitionB6Ng01-245P12.b B6Ng01-245P12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,417,342 - 40,417,640)(49,026,485 - 49,027,666)
sequence
tgcctctcagaaaagtaggagagagagagagagagggagagagggaggga
gggagggagagtttttttctccagggggagttttcatttttttgagttgg
tcagtttttggtgttttttttttgttttgttttttttttttttttttttt
tttttttttttttt

gaattcataagtgacttcaggcttgtttctttatttcagaagacactcat
actattgcaacaattaaaaaaactgaacatggatttgaaaaaaagtattt
tgacagttgtaatgtgattataaataagaatggttttattaaacatttta
tgacatgattgataattcttaaatggaaaaattgattttgctattttaat
ccaaaataactagtgttgcatgtatgaactgaattcaaagaacatagaca
ctcaaaattaatgcaatatatctatatttaattaacacaaaatttaaaag
gtatatttgtatatgattatatatttgtatatgtgttcaaactagaagta
taagattatcagaacttgttgaatatatcattagcattcttctgattgtg
gagatgtgtttataaatgttaaataagcaatagaaagagaatacggagat
tgatttcatcgaacacatagaagttgctaattatttgagaaatgtctgat
tgcctaattttttacacatgatgcaatgtgccctatagcagattatttca
tgaatgagtttcgcaaagaaaataattccttgcttttagacgtttcaaag
ctaaaagaatacactacaatgccaagaagtaatagagtactgtgaggtta
cacacaaacaaaaagcagttctgtgatggagtcaccatcagagagacagt
gaggcaaggaaggccatgaactttgcagtctcacacaactgcctttacat
gccacttccattcctctcatctatatatccatagacaaattgagttacct
tttgaggctggaatttctgtttggcaaagtaagaaaaaaatataatcagt
tatagagttactgtgcgactaagagggattgcaaatttaagtggtgagtc
ctggcctatttgatttattgcttttcttttttaaatagatatgaattatt
gattaactttcatggctatatctatttgacaaatagactactccttcatg
aatagctagacattgggacatatgaaacaaaagtgtacactgtgtattca
gaagataatattgtgtgctcatgtgaaacagaatctttctggcacttgac
tcatatatgtccctctctctgcacagtgcatctaaggcagccactcggat
gaccttcattggatggtccctatatacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_40417342_40417640
seq2: B6Ng01-245P12.b_53_210 (reverse)

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGGGTCTCTTTGGAA  50
      ||||||||||||||||||||||||||||||||||||              
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC--------------  36

seq1  GTTGAAAACTGCATATGCCTTTCACATCAGATTTGCAAACAGGATCGATT  100
          ||||                           |||| |  |      
seq2  ----AAAA---------------------------CAAAAAAAA------  49

seq1  TGAACAGCAGTTGCTGGAGACAGTGGCATGTGGATAAACTTAAAGACTCG  150
        |||| |                                 ||| |||  
seq2  --AACACC---------------------------------AAAAACT--  62

seq1  ATACACCCCTAGGGAAGAACTCACTCAGTTAAGGAGTGATTAAACTCCGT  200
                   ||  ||||||       ||  | |||  |||||||  
seq2  -------------GACCAACTCA-------AAAAAATGA--AAACTCC--  88

seq1  AGGTGCAGGCTGCTTATGTAAAAATAATATTCCCTCTTCCCTGTCATTTT  250
         || ||           ||||| | | | ||  | |||||        
seq2  CCCTGGAG-----------AAAAAAACTCTCCCTCCCTCCCT--------  119

seq1  GCCCCCCTCTCTCCCTCTCTACTCTCCCCAGAGGTCT-CTCCTTTTCTGA  299
          |||||||||||||||| ||||| |      ||| || |||||||||
seq2  ----CCCTCTCTCCCTCTCT-CTCTCTC------TCTCCTACTTTTCTGA  158


seq1: chr3_49026485_49027666
seq2: B6Ng01-245P12.g_67_1246

seq1  GAATTCATAAGTGACTTCAGGCTTGTTTCTTTATTTCAGAAGACACTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGTGACTTCAGGCTTGTTTCTTTATTTCAGAAGACACTCAT  50

seq1  ACTATTGCAACAATTAAAAAAACTGAACATGGATTTGAAAAAAAGTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGCAACAATTAAAAAAACTGAACATGGATTTGAAAAAAAGTATTT  100

seq1  TGACAGTTGTAATGTGATTATAAATAAGAATGGTTTTATTAAACATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTGTAATGTGATTATAAATAAGAATGGTTTTATTAAACATTTTA  150

seq1  TGACATGATTGATAATTCTTAAATGGAAAAATTGATTTTGCTATTTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGATTGATAATTCTTAAATGGAAAAATTGATTTTGCTATTTTAAT  200

seq1  CCAAAATAACTAGTGTTGCATGTATGAACTGAATTCAAAGAACATAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAACTAGTGTTGCATGTATGAACTGAATTCAAAGAACATAGACA  250

seq1  CTCAAAATTAATGCAATATATCTATATTTAATTAACACAAAATTTAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTAATGCAATATATCTATATTTAATTAACACAAAATTTAAAAG  300

seq1  GTATATTTGTATATGATTATATATTTGTATATGTGTTCAAACTAGAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTGTATATGATTATATATTTGTATATGTGTTCAAACTAGAAGTA  350

seq1  TAAGATTATCAGAACTTGTTGAATATATCATTAGCATTCTTCTGATTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTATCAGAACTTGTTGAATATATCATTAGCATTCTTCTGATTGTG  400

seq1  GAGATGTGTTTATAAATGTTAAATAAGCAATAGAAAGAGAATACGGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGTTTATAAATGTTAAATAAGCAATAGAAAGAGAATACGGAGAT  450

seq1  TGATTTCATCGAACACATAGAAGTTGCTAATTATTTGAGAAATGTCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCATCGAACACATAGAAGTTGCTAATTATTTGAGAAATGTCTGAT  500

seq1  TGCCTAATTTTTTACACATGATGCAATGTGCCCTATAGCAGATTATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAATTTTTTACACATGATGCAATGTGCCCTATAGCAGATTATTTCA  550

seq1  TGAATGAGTTTCGCAAAGAAAATAATTCCTTGCTTTTAGACGTTTCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAGTTTCGCAAAGAAAATAATTCCTTGCTTTTAGACGTTTCAAAG  600

seq1  CTAAAAGAATACACTACAATGCCAAGAAGTAATAGAGTACTGTGAGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGAATACACTACAATGCCAAGAAGTAATAGAGTACTGTGAGGTTA  650

seq1  CACACAAACAAAAAGCAGTTCTGTGATGGAGTCACCATCAGAGAGACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACAAAAAGCAGTTCTGTGATGGAGTCACCATCAGAGAGACAGT  700

seq1  GAGGCAAGGAAGGCCATGAACTTTGCAGTCTCACACAACTGCCTTTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGGAAGGCCATGAACTTTGCAGTCTCACACAACTGCCTTTACAT  750

seq1  GCCACTTCCATTCCTCTCATCTATATATCCATAGACAAATTGAGTTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCCATTCCTCTCATCTATATATCCATAGACAAATTGAGTTACCT  800

seq1  TTTGAGGCTGGAATTTCTGTTTGGCAAAGTAAGAAAAAAATATAATCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCTGGAATTTCTGTTTGGCAAAGTAAGAAAAAAATATAATCAGT  850

seq1  TATAGAGTTACTGTGCGACTAAGAGGGATTGCAAATTTAAGTGGTGAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGTTACTGTGCGACTAAGAGGGATTGCAAATTTAAGTGGTGAGTC  900

seq1  CTGGCCTATTTGATTTATTGCTTTTCTTTTTTAAATAGATATGAATTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTATTTGATTTATTGCTTTTCTTTTTTAAATAGATATGAATTATT  950

seq1  GATTAACTTTCATGGCTATAATCTATTTGACAAATAGACTACTCCTTCAT  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATTAACTTTCATGGCTAT-ATCTATTTGACAAATAGACTACTCCTTCAT  999

seq1  GAATAGCTAGACATTGGAACATATGAAACAAAAGTGTACACTGTGTATTT  1050
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  GAATAGCTAGACATTGGGACATATGAAACAAAAGTGTACACTGTGTA-TT  1048

seq1  CAGAAGATAATATTGTGTGCTCCATGTTGGAAACAGAA-CCTTCTGGCAC  1099
      ||||||||||||||||||||| |||||  ||||||||| | |||||||||
seq2  CAGAAGATAATATTGTGTGCT-CATGT--GAAACAGAATCTTTCTGGCAC  1095

seq1  TGGCCCCAATAATATGTCCCTCTC-CTGCAGCAGGGTGGCCATCTAA-GC  1147
      | | | ||   ||||||||||||| ||||| ||| |    ||||||| ||
seq2  TTGACTCA--TATATGTCCCTCTCTCTGCA-CAGTG----CATCTAAGGC  1138

seq1  AGCAAC-GAAAGGACCTTCAT--GATG----CCATATACATC  1182
      ||| ||    | |||||||||  ||||    | |||||||||
seq2  AGCCACTCGGATGACCTTCATTGGATGGTCCCTATATACATC  1180


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