BAC Information

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BAC

Clone NameB6Ng01-246E18
Chromosome3 (Build37)
Map Location 45,130,343 - 45,131,471
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296
Downstream genePcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246E18.bB6Ng01-246E18.g
ACCGA054947GA054948
length1,118716
definitionB6Ng01-246E18.b B6Ng01-246E18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccatctgttgaagttaaaaggccatttcatatgatttcacaga
aacccatacaaagtacatagaatttctccctagatgttatatgttactcc
caaatgactagaaatacagtgtaatcataaagtagcttagacactgtatt
agataagaaatagtgacatagaagaaagtcttgtatgtttagtacaaata
caaactttttcctaaatattttatctatattttgctgaatatgcaaatat
agggaaaaagacacatgggtcaattctccttctaggttaaatcacaccta
aaatattgtaggactggaaaaactcataccgataagcctctggatccaat
attgatatctgaaatcgtggaaattttttaccctgctctgatctcaaaaa
ccaccagagaagggggtgctccaaactgagaaaacagacaacttttattt
aaaacaactctctttttgaccctcaaaccttcattgttaaattctatata
gagaaaacaacgatgattttatacaatatagtattcatatacaactacaa
tatacccacaatagaaagagaattgagtggaagctaaaacgcactgagaa
ttgtggctagctccacgtatagaaccataggtaaaagctactcacctgaa
ccaaagtgctggatccacaagcgataagagacttcatgctatcttatcaa
aatgatgaggattgtgtgtggactagcgtgagaaggacaatcctgtgaga
cataaatatttgctgaaatgatttccaagaacactttcattcccaaattc
tcacagttgatactaaagagaagatgatattctaggtagagatgcaagtc
cttagacataatacaagagaatgctttataacaatgcctacatttcttat
cagagctgtggtataaatggaagaaatgcactttccaatcggcatcctct
aagtacgctgtgtcacttaaagaaaacaaaccaaccaaacctgagattaa
ttaaatatcagaaatatccctctccatgtatttgttttaacaaaaacaca
tgtctgtatattactgggaatatgcctattccagtatatgaaaacacaat
cttattttaagagctctc

gaattcctcagtttccattagttcataagctttctactatttctgccatg
ttggtattgagataagtaagaaagaggaaggtatattcttttacatttgg
ataaaatattttgtaaatatttgttaggtacatttggttataccatctgt
tagcttcagcatttctctgtttagttcttgtctggaagatctgtctattg
gtgacgaatggaatattgaagtttcccactatcagagtatgaaggccaat
atgtgctataaactgtaggagtgtttcttttacaaactcgggtgcccttg
tgtttgaggcatagaaagtaaataatgaaatgtcaacctgatggactttt
ccttagatgagtatgctgtattgtttcccatctctttgattagttttggt
ttgaagactatttcattagatattaaaatggctaccccagcttgcttctt
aggttcatttctcttatatatttttgcctaacccttcactcagaggtaaa
atctatccttgattttgaagtgtaattcttgaacacaatagaaggagggt
tcctgtttttacattcattctgctactctgtgtctttttatagggtcact
gagaccactgatactggcatatattaatgacctaggattcttgattcctg
ttatttttgttgtgtttgttggtggtgctgccatttgtatgaatgtgttt
ggggtgggtgggggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45130343_45131471
seq2: B6Ng01-246E18.b_40_1157

seq1  GAATTCACCATCTGTTGAAGTTAAAAGGCCATTTCATATGATTTCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATCTGTTGAAGTTAAAAGGCCATTTCATATGATTTCACAGA  50

seq1  AACCCATACAAAGTACATAGAATTTCTCCCTAGATGTTATATGTTACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATACAAAGTACATAGAATTTCTCCCTAGATGTTATATGTTACTCC  100

seq1  CAAATGACTAGAAATACAGTGTAATCATAAAGTAGCTTAGACACTGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGACTAGAAATACAGTGTAATCATAAAGTAGCTTAGACACTGTATT  150

seq1  AGATAAGAAATAGTGACATAGAAGAAAGTCTTGTATGTTTAGTACAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAAATAGTGACATAGAAGAAAGTCTTGTATGTTTAGTACAAATA  200

seq1  CAAACTTTTTCCTAAATATTTTATCTATATTTTGCTGAATATGCAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTTTCCTAAATATTTTATCTATATTTTGCTGAATATGCAAATAT  250

seq1  AGGGAAAAAGACACATGGGTCAATTCTCCTTCTAGGTTAAATCACACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAAGACACATGGGTCAATTCTCCTTCTAGGTTAAATCACACCTA  300

seq1  AAATATTGTAGGACTGGAAAAACTCATACCGATAAGCCTCTGGATCCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGTAGGACTGGAAAAACTCATACCGATAAGCCTCTGGATCCAAT  350

seq1  ATTGATATCTGAAATCGTGGAAATTTTTTACCCTGCTCTGATCTCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATCTGAAATCGTGGAAATTTTTTACCCTGCTCTGATCTCAAAAA  400

seq1  CCACCAGAGAAGGGGGTGCTCCAAACTGAGAAAACAGACAACTTTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGAGAAGGGGGTGCTCCAAACTGAGAAAACAGACAACTTTTATTT  450

seq1  AAAACAACTCTCTTTTTGACCCTCAAACCTTCATTGTTAAATTCTATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACTCTCTTTTTGACCCTCAAACCTTCATTGTTAAATTCTATATA  500

seq1  GAGAAAACAACGATGATTTTATACAATATAGTATTCATATACAACTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACAACGATGATTTTATACAATATAGTATTCATATACAACTACAA  550

seq1  TATACCCACAATAGAAAGAGAATTGAGTGGAAGCTAAAACGCACTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCACAATAGAAAGAGAATTGAGTGGAAGCTAAAACGCACTGAGAA  600

seq1  TTGTGGCTAGCTCCACGTATAGAACCATAGGTAAAAGCTACTCACCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTAGCTCCACGTATAGAACCATAGGTAAAAGCTACTCACCTGAA  650

seq1  CCAAAGTGCTGGATCCACAAGCGATAAGAGACTTCATGCTATCTTATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTGCTGGATCCACAAGCGATAAGAGACTTCATGCTATCTTATCAA  700

seq1  AATGATGAGGATTGTGTGTGGACTAGCGTGAGAAGGACAATCCTGTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGAGGATTGTGTGTGGACTAGCGTGAGAAGGACAATCCTGTGAGA  750

seq1  CATAAATATTTGCTGAAATGATTTCCAAGAACACTTTCATTCCCAAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATATTTGCTGAAATGATTTCCAAGAACACTTTCATTCCCAAATTC  800

seq1  TCACAGTTGATACTAAAGAGAAGATGATATTCTAGGTAGAGATGCAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTGATACTAAAGAGAAGATGATATTCTAGGTAGAGATGCAAGTC  850

seq1  CTTAGACATAATACAAGAGAATGCTTTATAACAATGCCTACATTTCTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACATAATACAAGAGAATGCTTTATAACAATGCCTACATTTCTTAT  900

seq1  CAGAGCTGTGGTATAAATGGAAGAAATGCACTTTCCAATCGGCATCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGTGGTATAAATGGAAGAAATGCACTTTCCAATCGGCATCCTCT  950

seq1  AAGTACGCTGTGTCACTTAAAGAAAACAAACCAAACCAAACCTGAGATTA  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGTACGCTGTGTCACTTAAAGAAAACAAACC-AACCAAACCTGAGATTA  999

seq1  ATTAAAATATCAGGAAATAATCCCCTCTCCCATGTTTTTTTTTTTTTTTA  1050
      ||| |||||||| ||||||   |||||| |||||     | ||| |||||
seq2  ATT-AAATATCA-GAAATA--TCCCTCT-CCATG-----TATTTGTTTTA  1039

seq1  ACAAAAACACATGTCTGTATATTACTGGG-ATATG-CTATTCAAGGTATA  1098
      ||||||||||||||||||||||||||||| ||||| |||||| | |||||
seq2  ACAAAAACACATGTCTGTATATTACTGGGAATATGCCTATTCCA-GTATA  1088

seq1  TG-AAACACAATC-TATTTTAAAAGAAGCTCTC  1129
      || |||||||||| ||||||||    |||||||
seq2  TGAAAACACAATCTTATTTTAA---GAGCTCTC  1118


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