BAC Information

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BAC

Clone NameB6Ng01-246J04
Chromosome3 (Build37)
Map Location 132,207,773 - 132,312,732
singlet/doubletdoublet
Overlap geneEG433653
Upstream genePapss1, Olfr375-ps1, Dkk2, LOC100039018
Downstream geneLOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246J04.bB6Ng01-246J04.g
ACCGA055154GA055155
length1,0151,101
definitionB6Ng01-246J04.b B6Ng01-246J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,207,773 - 132,208,777)(132,311,634 - 132,312,732)
sequence
gaattctgcactagaactatttggccccaggctttgttgttgatgttgtt
gttgttgttgtttttgttgttgttgttgttgttgttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcggagacttt
taatgactgcttctatttccttagaggttataggactgtttcgatggttt
acctgccctccgtttaactttgctatgtgacatctatctagaaattcgtc
catttcaattagattttccagttttttaaagtacaggcttttgaagtaag
cctagccttgaagggctgagctatctctccagccctaatttggtttttct
ttaggtgcagccgtgtgtcttcttcctgtttccatgtctctatcatcctg
cctctgaaagtgaattcactaaaaagagccttgccatctaagaaatgtta
atctcccctcctgccccatgccaagagaggaccataaactagatgggaga
tctagctagaaagaagaaaaacagtgttgtccctgttaaataataatcag
aataaagacatacaaatgacatctgggattagcctactccaaaggaaaca
catttaccaagtgagatcatttgagttaccacagaacacttgatcaattt
tgcttatcgatctgaaatgtccctagggacctgtgtgttaaagatttggt
ccccagcctgtggctctgctgagaggtaggtgcaacaacattcccaggtc
ttcatgctgccgtggaaggcgagactggaggatagagtggggacccaaat
ccttcatctttttcctgcctgtgagataagagttctttctctgatgtctg
cttctatcatagagaactgccttgtcacaggcaaagagcactaggcccac
acaatcacaggtgagaatctggtgaactggtggcatgaggctgaacgcct
ttcatctccaaattaatttttccttggggttttttggtctttgtttttgg
ctggaataatcacag
gaattcctctttgaaaagaccgatggaaaaggcaaactaaaagctgcttt
cagtaagttagcaaaagaataattgtggttgaaataacttcttcctacag
ccttcatccttcatgcgaaaagataacattgtatctgtaaatagcaggta
tattaaaaacggaaacatccgaagcttgggaaaggaagcttattcttaaa
acatatttgaacatagcgatactgttatcatggcctggctagcctactac
tagctgtctgtatcaaaacaaacggggagggagagagcaattgcaagagg
agatacttttgttccagccctaatttgagaaaatggaatagagaccatat
gcccatttttaaacggggaggtggttcaaggcctctttatgctacaatag
gcggagtaattcttgcttaaagctctctgctctccatgaggagttccttg
aagggcaggcatggtctgattctttcccccagttttccaggtccttggac
aatctgaatctctactaatatactaaagggtaaaggaaggctgtcccatc
cactgagggctcaagtataaagggttagtttataagtgagcaatggagac
tggtaagtcttctagggctttggttacttcctggttctctcaactgaggg
aaattatgtcttcctaatatgggccctctctcctttatagatttattttc
accttttctgcaatctttagtctgctcttttatggtaatgcttgaaaatc
ttcgatttttcttttcctttgaaaacaaaatatgatgtatctaaaagctg
ctagactggtaaaaggaagcagttctttaagatagaaaggcagagtgccc
ataacacgctctgggcctggagagatgggcccagtggttaagaacatgag
ctgctctaccagagttcccgtgtttcgatatccagcacacacatggctgc
tcacaagtaatctgtaactctgtcccagaggatccaacacacttcttctg
gcctctgaggcactgcatggatgttgtacaatgaacatacatgtagagat
tcatctgtatacataaataaaaataagtcctcaaaccaatataataaaaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132207773_132208777
seq2: B6Ng01-246J04.b_46_1060

seq1  GAATTCTGCACTAGAACTATTTGGCCCCAGGCTTTGTTGTTGATGTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTAGAACTATTTGGCCCCAGGCTTTGTTGTTGATGTTGTT  50

seq1  GTTGTTGTTGTTTTTGTTGTTGTTGTTGTTGTTGTTCTTCTTCTTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTTTTGTTGTTGTTGTTGTTGTTGTTCTTCTTCTTCTTCT  100

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGGAGACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGGAGACTTT  150

seq1  TAATGACTGCTTCTATTTCCTTAGAGGTTATAGGACTGTTTCGATGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTGCTTCTATTTCCTTAGAGGTTATAGGACTGTTTCGATGGTTT  200

seq1  ACCTGCCCTCCGTTTAACTTTGCTATGTGACATCTATCTAGAAATTCGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCTCCGTTTAACTTTGCTATGTGACATCTATCTAGAAATTCGTC  250

seq1  CATTTCAATTAGATTTTCCAGTTTTTTAAAGTACAGGCTTTTGAAGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAATTAGATTTTCCAGTTTTTTAAAGTACAGGCTTTTGAAGTAAG  300

seq1  CCTAGCCTTGAAGGGCTGAGCTATCTCTCCAGCCCTAATTTGGTTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCTTGAAGGGCTGAGCTATCTCTCCAGCCCTAATTTGGTTTTTCT  350

seq1  TTAGGTGCAGCCGTGTGTCTTCTTCCTGTTTCCATGTCTCTATCATCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGCAGCCGTGTGTCTTCTTCCTGTTTCCATGTCTCTATCATCCTG  400

seq1  CCTCTGAAAGTGAATTCACTAAAAAGAGCCTTGCCATCTAAGAAATGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAAGTGAATTCACTAAAAAGAGCCTTGCCATCTAAGAAATGTTA  450

seq1  ATCTCCCCTCCTGCCCCATGCCAAGAGAGGACCATAAACTAGATGGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCTCCTGCCCCATGCCAAGAGAGGACCATAAACTAGATGGGAGA  500

seq1  TCTAGCTAGAAAGAAGAAAAACAGTGTTGTCCCTGTTAAATAATAATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTAGAAAGAAGAAAAACAGTGTTGTCCCTGTTAAATAATAATCAG  550

seq1  AATAAAGACATACAAATGACATCTGGGATTAGCCTACTCCAAAGGAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGACATACAAATGACATCTGGGATTAGCCTACTCCAAAGGAAACA  600

seq1  CATTTACCAAGTGAGATCATTTGAGTTACCACAGAACACTTGATCAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCAAGTGAGATCATTTGAGTTACCACAGAACACTTGATCAATTT  650

seq1  TGCTTATCGATCTGAAATGTCCCTAGGGACCTGTGTGTTAAAGATTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATCGATCTGAAATGTCCCTAGGGACCTGTGTGTTAAAGATTTGGT  700

seq1  CCCCAGCCTGTGGCTCTGCTGAGAGGTAGGTGCAACAACA-TCCCAGGTC  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCCAGCCTGTGGCTCTGCTGAGAGGTAGGTGCAACAACATTCCCAGGTC  750

seq1  TTCATGCTGCCGTGGAAGGCGAGACTGGAGGATAGAGTGGGACCCAAAAT  799
      |||||||||||||||||||||||||||||||||||||||||  || ||||
seq2  TTCATGCTGCCGTGGAAGGCGAGACTGGAGGATAGAGTGGGGACCCAAAT  800

seq1  CCTTCATCTTTTTCCTGCCTGTGAGATAAGAGTTCTTTCTCTGATGTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCTTTTTCCTGCCTGTGAGATAAGAGTTCTTTCTCTGATGTCTG  850

seq1  CTTCTATCATAGAGAACTGCCTTGTCACAGGCAAAGAGCAACCAGG-CCA  898
      ||||||||||||||||||||||||||||||||||||||| || ||| |||
seq2  CTTCTATCATAGAGAACTGCCTTGTCACAGGCAAAGAGC-ACTAGGCCCA  899

seq1  CACAATCACAGGTGAGAATCT-GTGAACTG--TGCATGAAGCTGAACG-C  944
      ||||||||||||||||||||| ||||||||   |||||| |||||||| |
seq2  CACAATCACAGGTGAGAATCTGGTGAACTGGTGGCATGAGGCTGAACGCC  949

seq1  TTTCATCCTCCAAATTTATTTT--CTTGGG--TTTTTTGTCTTTG-TTTT  989
      |||||| ||||||||| |||||  ||||||  ||||| ||||||| ||||
seq2  TTTCAT-CTCCAAATTAATTTTTCCTTGGGGTTTTTTGGTCTTTGTTTTT  998

seq1  GGCTGAAAT-ATCACAG  1005
      ||||| ||| |||||||
seq2  GGCTGGAATAATCACAG  1015

seq1: chr3_132311634_132312732
seq2: B6Ng01-246J04.g_66_1166 (reverse)

seq1  TTTTTTATTATTTTTGTTTTGAGATTTTATTTTTATTTTATGTATACAGA  50
      |||||||||| | ||| ||||||   ||||||||| ||||||||||||||
seq2  TTTTTTATTA-TATTGGTTTGAGGACTTATTTTTA-TTTATGTATACAGA  48

seq1  TGATTCTCCTACATGTATGTTCA-TGTACAACATCCATGCAGTGCCCTCA  99
      ||| ||| ||||||||||||||| |||||||||||||||||||| |||||
seq2  TGAATCT-CTACATGTATGTTCATTGTACAACATCCATGCAGTG-CCTCA  96

seq1  GAGGGCAGAAG-AGTGTGTTGGATCCTCTGGGACAGAGTTACAGA-TACT  147
      |||| |||||| ||||||||||||||||||||||||||||||||| ||||
seq2  GAGGCCAGAAGAAGTGTGTTGGATCCTCTGGGACAGAGTTACAGATTACT  146

seq1  TGTGAGCAGCCATGTGTGTGCTGGATATCG-AACACGGGAACTCTGGTAG  196
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGAGCAGCCATGTGTGTGCTGGATATCGAAACACGGGAACTCTGGTAG  196

seq1  AGCAGCTCATGTTCTTAACCACTGGG-CCATCTCTCCAGGCCCAGAGCGT  245
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGCAGCTCATGTTCTTAACCACTGGGCCCATCTCTCCAGGCCCAGAGCGT  246

seq1  GTTATGGGCACTCTGCC-TTCTATCTTAAAGAACTGCTTCCTTTTACCAG  294
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTTATGGGCACTCTGCCTTTCTATCTTAAAGAACTGCTTCCTTTTACCAG  296

seq1  TCTAGCAGCTTTTAGATACATCATATTTTGTTTTCAAAGGAAAAGAAAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAGCTTTTAGATACATCATATTTTGTTTTCAAAGGAAAAGAAAAA  346

seq1  TCGAAGATTTTCAAGCATTACCATAAAAGAGCAGACTAAAGATTGCAGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGATTTTCAAGCATTACCATAAAAGAGCAGACTAAAGATTGCAGAA  396

seq1  AAGGTGAAAATAAATCTATAAAGGAGAGAGGGCCCATATTAGGAAGACAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAAATAAATCTATAAAGGAGAGAGGGCCCATATTAGGAAGACAT  446

seq1  AATTTCCCTCAGTTGAGAGAACCAGGAAGTAACCAAAGCCCTAGAAGACT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCTCAGTTGAGAGAACCAGGAAGTAACCAAAGCCCTAGAAGACT  496

seq1  TACCAGTCTCCATTGCTCACTTATAAACTAACCCTTTATACTTGAGCCCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTCTCCATTGCTCACTTATAAACTAACCCTTTATACTTGAGCCCT  546

seq1  CAGTGGATGGGACAGCCTTCCTTTACCCTTTAGTATATTAGTAGAGATTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATGGGACAGCCTTCCTTTACCCTTTAGTATATTAGTAGAGATTC  596

seq1  AGATTGTCCAAGGACCTGGAAAACTGGGGGAAAGAATCAGACCATGCCTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTCCAAGGACCTGGAAAACTGGGGGAAAGAATCAGACCATGCCTG  646

seq1  CCCTTCAAGGAACTCCTCATGGAGAGCAGAGAGCTTTAAGCAAGAATTAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAAGGAACTCCTCATGGAGAGCAGAGAGCTTTAAGCAAGAATTAC  696

seq1  TCCGCCTATTGTAGCATAAAGAGGCCTTGAACCACCTCCCCGTTTAAAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCTATTGTAGCATAAAGAGGCCTTGAACCACCTCCCCGTTTAAAAA  746

seq1  TGGGCATATGGTCTCTATTCCATTTTCTCAAATTAGGGCTGGAACAAAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATATGGTCTCTATTCCATTTTCTCAAATTAGGGCTGGAACAAAAG  796

seq1  TATCTCCTCTTGCAATTGCTCTCTCCCTCCCCGTTTGTTTTGATACAGAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCTCTTGCAATTGCTCTCTCCCTCCCCGTTTGTTTTGATACAGAC  846

seq1  AGCTAGTAGTAGGCTAGCCAGGCCATGATAACAGTATCGCTATGTTCAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTAGTAGGCTAGCCAGGCCATGATAACAGTATCGCTATGTTCAAA  896

seq1  TATGTTTTAAGAATAAGCTTCCTTTCCCAAGCTTCGGATGTTTCCGTTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTAAGAATAAGCTTCCTTTCCCAAGCTTCGGATGTTTCCGTTTT  946

seq1  TAATATACCTGCTATTTACAGATACAATGTTATCTTTTCGCATGAAGGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACCTGCTATTTACAGATACAATGTTATCTTTTCGCATGAAGGAT  996

seq1  GAAGGCTGTAGGAAGAAGTTATTTCAACCACAATTATTCTTTTGCTAACT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGTAGGAAGAAGTTATTTCAACCACAATTATTCTTTTGCTAACT  1046

seq1  TACTGAAAGCAGCTTTTAGTTTGCCTTTTCCATCGGTCTTTTCAAAGAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAGCAGCTTTTAGTTTGCCTTTTCCATCGGTCTTTTCAAAGAGG  1096

seq1  AATTC  1099
      |||||
seq2  AATTC  1101