BAC Information

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BAC

Clone NameB6Ng01-247B02
Chromosome3 (Build37)
Map Location 81,434,424 - 81,435,555
singlet/doubletsinglet
Overlap genenone
Upstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247B02.bB6Ng01-247B02.g
ACCGA055507GA055508
length1,1511,087
definitionB6Ng01-247B02.b B6Ng01-247B02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattattgttataaatcatctttaaataattcaatgctttgtaa
cataagtgctcccataaatgatttacttgttcttttattattcctagaga
ccatattttatgtaatcttataaacaaattggatttctgcttggtaattt
tctatttctatgatatatctgtttgtaacctgtttagaaaaaaatacgat
gaaggatgtcattgtcaccaacagcatctacatcattactctctactcat
gctattctttcccaacaacacacacacacacacacacacaaacacacaca
cacacacacacacacactgactatatacataatctaacaataatttaagt
ataacaaaacacacacacacacacacacacacactgactgtatacataat
ctaacaataatttaagtataacaaaacacacacacacacacacacacaca
ctgactgtatacataatctaacaataatttaagtatagatatttgggaac
agcaaatagttttacttttttgttactttctgtaaatttgtagacatcag
cccataaattgaatatgtaagtaaactataatggaagcatttaatgccat
gaaaatcagattatgttctctaactatttgcagaaactggattttcaatg
ggttacaaactgagatatgatatattggccttgctcattgaaaaggtgat
actctgtgctttttaacaggagctcatagttccattggcttaaaaaaaaa
taaggctagaagatcacttgggtccagaagttcagggccagtatggacaa
attataatatttaagcaaattctgatcggacatgaaaattagagaaaata
gttttagaaaggtaaaatgaggggtacaaatgcattaaaaccagagcata
tgtgaatgtaagggggttgtgaggaaatctgggtggctggaatcattcat
tccagaagagaagtgagggtaaacaagtaaagctctgattggtggggtat
gtaggcctactctaggtgttttttgtttatttctggagtccaggagaaca
caaattttcctccaggacctgcagtaaatttacccatattcccatggtgg
gccagtttagtgctccaagaccatggtcaggtgtaggaggcacattcacc
c
gaattcctgatctttccaagacttttatgcacaggtgttggattttgtga
aaagctttcacaacatctaatgaaataataatgtgggtttttttcccttt
gagtttgcttatatagtggattgcattgatggatttccttatattgaaac
atcctgcatccctgggttgaaacccacttaatcatgatggatgatcattg
tcatgtgttcttggatttggtttgtgaaaattttattgggtatttttgca
tatatattcataagggtgattggtctgaagttctctttctttgtgggtct
ttgtgtggtttaggtatcagagtagttgtggcctcatagaacaaattggg
tagggttccttctgtttctattttgtggaataatttgtagagtattggta
ttaggtcttctttgaaggtctgattgaactctgcatctgatcctgagctt
ttttttttttttttttggttgggagactgttaatgacttctgctatttct
ttaggggttacataactgtttacattgttaatctgactctaaatttactt
tgacaactgatatctgtctagaaaattgtccatttcattcagattttcca
gttttgtttagtataggattttgtagtaggatctgatgggttgtttggct
ttccttggtttcgtttgttgtgtctccctttacacttctgattttattaa
ttaggatactttccctgtgccctctggttagtttggctaaggatttatct
atcctttttgtttttcccaaataatcagcttctggcttgattgattcttt
gtgtagttctttttgtttctacttggttgatttcagctctgagattgatt
atttcctgcctctactcctcttgggtctatttacttgtttttgttctaga
gctttcatttgttctgtcaagctgctagtgttgctctctccagtttcttt
ttgggaggcattcagattatggagtattcctcttaaccattgccttcatt
gtgtctgttagatggggtatgttgtggctttcattttgatggactataat
gtcctcagtacttctgatcttctcgcaccagatagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81434424_81435555
seq2: B6Ng01-247B02.b_44_1194 (reverse)

seq1  GGGTG-ATGTGGCCTCCTACA-CTGACCATGGTCT--GAGCACTAAAACT  46
      ||||| |||| |||||||||| |||||||||||||  ||||||| |||||
seq2  GGGTGAATGT-GCCTCCTACACCTGACCATGGTCTTGGAGCACT-AAACT  48

seq1  G--CCA-CATGGGAATATGG--TAATTTACTTGCAGGTCCTGGA-GAAAA  90
      |  ||| |||||||||||||   ||||||| ||||||||||||| |||||
seq2  GGCCCACCATGGGAATATGGGTAAATTTAC-TGCAGGTCCTGGAGGAAAA  97

seq1  TTTGTGTTCT-CTTGACT-CAG-AATAAAACAAAAACACTTAGAGTA-GC  136
      |||||||||| || |||| ||| ||||||  |||||||| ||||||| ||
seq2  TTTGTGTTCTCCTGGACTCCAGAAATAAACAAAAAACACCTAGAGTAGGC  147

seq1  CTACATACCC--ACAATCAGAGCTTTAC-TGTT--ACCTCACTTCTCTTC  181
      ||||||||||   ||||||||||||||| ||||   ||||||||||||||
seq2  CTACATACCCCACCAATCAGAGCTTTACTTGTTTACCCTCACTTCTCTTC  197

seq1  TGGAATGAATGATTCCAGCCACCCAGATTTCCTCACAA-CCCCTTACATT  230
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGAATGAATGATTCCAGCCACCCAGATTTCCTCACAACCCCCTTACATT  247

seq1  CACATATGCTCTGGTTTTAATGCATTTGTA-CCCTCATTTTACCTTTCTA  279
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACATATGCTCTGGTTTTAATGCATTTGTACCCCTCATTTTACCTTTCTA  297

seq1  AAACTATTTTCTCTAATTTTCATGTCCGATCAGAATTTGCTTAAATATTA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTTTCTCTAATTTTCATGTCCGATCAGAATTTGCTTAAATATTA  347

seq1  TAATTTGTCCATACTGGCCCTGAACTTCTGGACCCAAGTGATCTTCTAGC  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTCCATACTGGCCCTGAACTTCTGGACCCAAGTGATCTTCTAGC  397

seq1  CTTA-TTTTTTTTAAGCCAATGGAACTATGAGCTCCTGTTAAAAAGCACA  428
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTTTTTAAGCCAATGGAACTATGAGCTCCTGTTAAAAAGCACA  447

seq1  GAGTATCACCTTTTCAATGAGCAAGGCCAATATATCATATCTCAGTTTGT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCACCTTTTCAATGAGCAAGGCCAATATATCATATCTCAGTTTGT  497

seq1  AACCCATTGAAAATCCAGTTTCTGCAAATAGTTAGAGAACATAATCTGAT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATTGAAAATCCAGTTTCTGCAAATAGTTAGAGAACATAATCTGAT  547

seq1  TTTCATGGCATTAAATGCTTCCATTATAGTTTACTTACATATTCAATTTA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGCATTAAATGCTTCCATTATAGTTTACTTACATATTCAATTTA  597

seq1  TGGGCTGATGTCTACAAATTTACAGAAAGTAACAAAAAAGTAAAACTATT  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGATGTCTACAAATTTACAGAAAGTAACAAAAAAGTAAAACTATT  647

seq1  TGCTGTTCCCAAATATCTATACTTAAATTATTGTTAGATTATGTATACAG  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCCCAAATATCTATACTTAAATTATTGTTAGATTATGTATACAG  697

seq1  TCAGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGTTATACTTAAATTATTG  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGTTATACTTAAATTATTG  747

seq1  TTAGATTATGTATACAGTCAGTGTGTGTGTGTGTGTGTGTGTGTGTTTTG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTATGTATACAGTCAGTGTGTGTGTGTGTGTGTGTGTGTGTTTTG  797

seq1  TTATACTTAAATTATTGTTAGATTATGTATATAGTCAGTGTGTGTGTGTG  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTAAATTATTGTTAGATTATGTATATAGTCAGTGTGTGTGTGTG  847

seq1  TGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTTGTTGGGAAAGAA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTTGTTGGGAAAGAA  897

seq1  TAGCATGAGTAGAGAGTAATGATGTAGATGCTGTTGGTGACAATGACATC  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGAGTAGAGAGTAATGATGTAGATGCTGTTGGTGACAATGACATC  947

seq1  CTTCATCGTATTTTTTTCTAAACAGGTTACAAACAGATATATCATAGAAA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCGTATTTTTTTCTAAACAGGTTACAAACAGATATATCATAGAAA  997

seq1  TAGAAAATTACCAAGCAGAAATCCAATTTGTTTATAAGATTACATAAAAT  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTACCAAGCAGAAATCCAATTTGTTTATAAGATTACATAAAAT  1047

seq1  ATGGTCTCTAGGAATAATAAAAGAACAAGTAAATCATTTATGGGAGCACT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTCTAGGAATAATAAAAGAACAAGTAAATCATTTATGGGAGCACT  1097

seq1  TATGTTACAAAGCATTGAATTATTTAAAGATGATTTATAACAATAATTGA  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTACAAAGCATTGAATTATTTAAAGATGATTTATAACAATAATTGA  1147

seq1  ATTC  1132
      ||||
seq2  ATTC  1151