BAC Information

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BAC

Clone NameB6Ng01-247D06
Chromosome3 (Build37)
Map Location 140,064,309 - 140,191,956
singlet/doubletdoublet
Overlap genenone
Upstream geneB930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2, Unc5c, LOC100039923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247D06.bB6Ng01-247D06.g
ACCGA055599GA055600
length1,1831,152
definitionB6Ng01-247D06.b B6Ng01-247D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,064,309 - 140,065,467)(140,190,810 - 140,191,956)
sequence
gaattccagagaaggaataaaagtaaatactgagtgacctgacactgaag
gaaagctgaaaactttcagagaaacttcagacagagggtgtaattttatt
ccatgtgataatttactacctgtctgggaattgtatggcatcccacaatg
agcagctatgcctgcagttctgttcagagaagaaaatacatgtgaaagac
tgggcttgctatgggtaatcttggctatcagttcaactggatctggctca
agtcaactgaaacacgagatggaacagtccaatgagggacctccttgacc
gtggtatttgaagtggaaagacctaccctaaacatgggcagctcctttgg
gtgacagtttggggtgaaagcatatggaagaagtacacttcttgttgcct
gtttgccgttttcttgctgtcaaattcacctaatttgttattgcagtacc
ccttgtcaagatgcgacatcaccttcttctgacttctaatgtatactgaa
gactccaaggagttctgcagagtttcaatgccaatttgggaattctgagc
catttagcctcctgtactgaacaaatacagattcctatttttgacctctc
tagtgtgagacagccattattggtctacttcgattttatatgtaagaaaa
tgcaacaaattcacacacacacacacacacacacacacacacacacacac
acacacacacatgcagagagagatagacagagatagacagagagacagac
agagagacagacagacagacagacagacagacagacagagagacagagat
tttatatatagataaagagagagggggagagagattatagatacataaat
gacagattcactcttcattctattagtgatgttactttgaccaatataga
gccaaaactaatatcaacactttattgactttacagaacccatatctcta
ggacccacatctgatgatgttttgagagcctattgtgttgtttagaaaaa
acatttccagcctgactttgaggcaaccacagagctgaaatgtttttact
aaaagaacagtgaaagtaatcaattttaacagcaatgactttcccatttt
catataataaacaaaaagcttaataccttttctagggttcataggtagtc
ctttttccagctgtgttaggaggaagcctgttc

gaattctctgcaaacttttagttcaattcagaatgttaggtatataactt
atcctaactttgaaatttaagaagaaaataatatgagtacaatatgaaaa
aagaggtaactgggcttgaactttagtagtatataactaaaatttgatcc
cacatataaaagatataggatgcagagtccataaaactaagtagagatga
agtcaggagagatagtgttttcatattttaaggcttgcttaaattagtct
gactgagaagttgtgagtggagactgtgagcctcacatccaggcagagtg
ttcatcatcacaagatcactgtgtattttcagactcattctagtcaatgt
ctactgagaggttattccaaatgtaggagacaagaggaaaagataattga
attctgggacctatactaatagtgcataaaattccagtagaagcatagag
atctctgataaaccagaagcagagttatattaaaatcaatgactgtgagt
gatttctgagtgaggatcaagttgtcttcagtgtgccaacctctttacta
tttagggtctacataaccacatatagttagagataaaactgtgttatagg
atgccaattgccattcttaaaatggaagatatgttggtgtgggagaaaac
agcatgtattcagcataacaaatgttagattccatagccactggatcaat
gatgattgcataaaggaggaaaactgcctcagaaatgcttctttgaaata
tcagctagggaaacaggaaagaaaataaatgtgtcaataaattaaatata
catctggtgttctaagtgtgtagtggtatttggggtaaacagagatgctg
gatgctcatcagatagctaactgagcacctatatttcccatgtttctttc
ttcttagttcatacacttccttttttaaaaaaatgagctgtaggtagagg
ggaaagcatgtttcatttcactgcaaagaacttagggaacatttacatct
ttggaaattttctccttttccccttgatgtcatgaaaataggcaccaggt
aaaaaattgcatcacagagtatttgggtggagtggaattgaagccccaaa
ttttatggatatccaccaccatcagcctaatctgagaaaaaattattttt
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140064309_140065467
seq2: B6Ng01-247D06.b_48_1230

seq1  GAATTCCAGAGAAGGAATAAAAGTAAATACTGAGTGACCTGACACTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGAAGGAATAAAAGTAAATACTGAGTGACCTGACACTGAAG  50

seq1  GAAAGCTGAAAACTTTCAGAGAAACTTCAGACAGAGGGTGTAATTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGAAAACTTTCAGAGAAACTTCAGACAGAGGGTGTAATTTTATT  100

seq1  CCATGTGATAATTTACTACCTGTCTGGGAATTGTATGGCATCCCACAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGATAATTTACTACCTGTCTGGGAATTGTATGGCATCCCACAATG  150

seq1  AGCAGCTATGCCTGCAGTTCTGTTCAGAGAAGAAAATACATGTGAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTATGCCTGCAGTTCTGTTCAGAGAAGAAAATACATGTGAAAGAC  200

seq1  TGGGCTTGCTATGGGTAATCTTGGCTATCAGTTCAACTGGATCTGGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGCTATGGGTAATCTTGGCTATCAGTTCAACTGGATCTGGCTCA  250

seq1  AGTCAACTGAAACACGAGATGGAACAGTCCAATGAGGGACCTCCTTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTGAAACACGAGATGGAACAGTCCAATGAGGGACCTCCTTGACC  300

seq1  GTGGTATTTGAAGTGGAAAGACCTACCCTAAACATGGGCAGCTCCTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATTTGAAGTGGAAAGACCTACCCTAAACATGGGCAGCTCCTTTGG  350

seq1  GTGACAGTTTGGGGTGAAAGCATATGGAAGAAGTACACTTCTTGTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTTTGGGGTGAAAGCATATGGAAGAAGTACACTTCTTGTTGCCT  400

seq1  GTTTGCCGTTTTCTTGCTGTCAAATTCACCTAATTTGTTATTGCAGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCGTTTTCTTGCTGTCAAATTCACCTAATTTGTTATTGCAGTACC  450

seq1  CCTTGTCAAGATGCGACATCACCTTCTTCTGACTTCTAATGTATACTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCAAGATGCGACATCACCTTCTTCTGACTTCTAATGTATACTGAA  500

seq1  GACTCCAAGGAGTTCTGCAGAGTTTCAATGCCAATTTGGGAATTCTGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAAGGAGTTCTGCAGAGTTTCAATGCCAATTTGGGAATTCTGAGC  550

seq1  CATTTAGCCTCCTGTACTGAACAAATACAGATTCCTATTTTTGACCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGCCTCCTGTACTGAACAAATACAGATTCCTATTTTTGACCTCTC  600

seq1  TAGTGTGAGACAGCCATTATTGGTCTACTTCGATTTTATATGTAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGAGACAGCCATTATTGGTCTACTTCGATTTTATATGTAAGAAAA  650

seq1  TGCAACAAATTCACACACACACACACACACACACACACACACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAAATTCACACACACACACACACACACACACACACACACACACAC  700

seq1  ACACACACACATGCAGAGAGAGATAGACAGAGATAGACAGAGAGACAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACATGCAGAGAGAGATAGACAGAGATAGACAGAGAGACAGAC  750

seq1  AGAGAGACAGACAGACAGACAGACAGACAGACAGACAGAGAGACAGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGACAGACAGACAGACAGACAGACAGACAGAGAGACAGAGAT  800

seq1  TTTATATATAGATAAAGAGAGAGGGGGAGAGAGATTATAGATACATAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATAGATAAAGAGAGAGGGGGAGAGAGATTATAGATACATAAAT  850

seq1  GACAGATTCACTCTTCATTCTATTAGTGATGTTACTTTGACCAATATAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATTCACTCTTCATTCTATTAGTGATGTTACTTTGACCAATATAGA  900

seq1  GCC-AAACTAATATC-ACAC-TTATTGACTTTACAGAA-CCATATCTCTA  946
      ||| ||||||||||| |||| ||||||||||||||||| |||||||||||
seq2  GCCAAAACTAATATCAACACTTTATTGACTTTACAGAACCCATATCTCTA  950

seq1  GGACCCACATCTGATGATG-TTTGAGAGCCTATTGTGTTGTTTAGAAAAA  995
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGACCCACATCTGATGATGTTTTGAGAGCCTATTGTGTTGTTTAGAAAAA  1000

seq1  ACATTTCCAG-CTGAC-TTGAGGCAA-CACAGAGCTGAAATGTTTTTACT  1042
      |||||||||| ||||| ||||||||| |||||||||||||||||||||||
seq2  ACATTTCCAGCCTGACTTTGAGGCAACCACAGAGCTGAAATGTTTTTACT  1050

seq1  AAA--GACAGTG-AAGTAATC-ATTTTAACAGC-ATGACTTT-CCATTTT  1086
      |||   |||||| |||||||| ||||||||||| |||||||| |||||||
seq2  AAAAGAACAGTGAAAGTAATCAATTTTAACAGCAATGACTTTCCCATTTT  1100

seq1  CATAT-ATAAAC--AAAGCTT-ATA-CTTTTCTA-GGTTCATA-GTAGTC  1129
      ||||| ||||||  ||||||| ||| |||||||| |||||||| ||||||
seq2  CATATAATAAACAAAAAGCTTAATACCTTTTCTAGGGTTCATAGGTAGTC  1150

seq1  CTTTT--CAGTTTGTGTTA-GAGGAAG-CTGTTC  1159
      |||||  |||  ||||||| ||||||| ||||||
seq2  CTTTTTCCAG-CTGTGTTAGGAGGAAGCCTGTTC  1183


seq1: chr3_140190810_140191956
seq2: B6Ng01-247D06.g_67_1218 (reverse)

seq1  GGAAAAATAATTTTTTCTCTGATTA-GCTGAATGTGTGGTGATTATCAAT  49
      ||||||||||||||||||| ||||| |||| ||| ||||||  |||| ||
seq2  GGAAAAATAATTTTTTCTCAGATTAGGCTG-ATG-GTGGTGGATATCCAT  48

seq1  AATATTTTGGGGCTCAAT--CACTCCA-CCAAATACTCTGGTGATTGCAT  96
      || |||| |||  |||||  ||||||| ||||||||||| |||||   ||
seq2  AAAATTTGGGGCTTCAATTCCACTCCACCCAAATACTCT-GTGATGCAAT  97

seq1  TTTTT-CCTGGTGCCTATTTTCATTGACATCAAGGGG-AAAGGAGAAAA-  143
      ||||| ||||||||||||||||| ||||||||||||| ||||||||||| 
seq2  TTTTTACCTGGTGCCTATTTTCA-TGACATCAAGGGGAAAAGGAGAAAAT  146

seq1  TTCCAAAGATGTAAATGTT-CCTAAGTTTCTTTGCAGTGAAATG-AACAT  191
      ||||||||||||||||||| |||||| ||||||||||||||||| |||||
seq2  TTCCAAAGATGTAAATGTTCCCTAAG-TTCTTTGCAGTGAAATGAAACAT  195

seq1  GCTTT-CCCTCTACCTACAGCTCATTTTTTTTAAAAAGGAAGTGTATGAA  240
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTTTCCCCTCTACCTACAGCTCATTTTTTTAAAAAAGGAAGTGTATGAA  245

seq1  CTAAGAAGAAAGAAACATGGGAAATATAGGTGCTCAGTTAGCTATCTGAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGAAAGAAACATGGGAAATATAGGTGCTCAGTTAGCTATCTGAT  295

seq1  GAGCATCCAGCATCTCTGTTTACCCCAAATACCACTACACACTTAGAACA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCCAGCATCTCTGTTTACCCCAAATACCACTACACACTTAGAACA  345

seq1  CCAGATGTATATTTAATTTATTGACACATTTATTTTCTTTCCTGTTTCCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTATATTTAATTTATTGACACATTTATTTTCTTTCCTGTTTCCC  395

seq1  TAGCTGATATTTCAAAGAAGCATTTCTGAGGCAGTTTTCCTCCTTTATGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATATTTCAAAGAAGCATTTCTGAGGCAGTTTTCCTCCTTTATGC  445

seq1  AATCATCATTGATCCAGTGGCTATGGAATCTAACATTTGTTATGCTGAAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCATTGATCCAGTGGCTATGGAATCTAACATTTGTTATGCTGAAT  495

seq1  ACATGCTGTTTTCTCCCACACCAACATATCTTCCATTTTAAGAATGGCAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGTTTTCTCCCACACCAACATATCTTCCATTTTAAGAATGGCAA  545

seq1  TTGGCATCCTATAACACAGTTTTATCTCTAACTATATGTGGTTATGTAGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATCCTATAACACAGTTTTATCTCTAACTATATGTGGTTATGTAGA  595

seq1  CCCTAAATAGTAAAGAGGTTGGCACACTGAAGACAACTTGATCCTCACTC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAATAGTAAAGAGGTTGGCACACTGAAGACAACTTGATCCTCACTC  645

seq1  AGAAATCACTCACAGTCATTGATTTTAATATAACTCTGCTTCTGGTTTAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCACTCACAGTCATTGATTTTAATATAACTCTGCTTCTGGTTTAT  695

seq1  CAGAGATCTCTATGCTTCTACTGGAATTTTATGCACTATTAGTATAGGTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTCTATGCTTCTACTGGAATTTTATGCACTATTAGTATAGGTC  745

seq1  CCAGAATTCAATTATCTTTTCCTCTTGTCTCCTACATTTGGAATAACCTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTCAATTATCTTTTCCTCTTGTCTCCTACATTTGGAATAACCTC  795

seq1  TCAGTAGACATTGACTAGAATGAGTCTGAAAATACACAGTGATCTTGTGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGACATTGACTAGAATGAGTCTGAAAATACACAGTGATCTTGTGA  845

seq1  TGATGAACACTCTGCCTGGATGTGAGGCTCACAGTCTCCACTCACAACTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAACACTCTGCCTGGATGTGAGGCTCACAGTCTCCACTCACAACTT  895

seq1  CTCAGTCAGACTAATTTAAGCAAGCCTTAAAATATGAAAACACTATCTCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAGACTAATTTAAGCAAGCCTTAAAATATGAAAACACTATCTCT  945

seq1  CCTGACTTCATCTCTACTTAGTTTTATGGACTCTGCATCCTATATCTTTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTCATCTCTACTTAGTTTTATGGACTCTGCATCCTATATCTTTT  995

seq1  ATATGTGGGATCAAATTTTAGTTATATACTACTAAAGTTCAAGCCCAGTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGGATCAAATTTTAGTTATATACTACTAAAGTTCAAGCCCAGTT  1045

seq1  ACCTCTTTTTTCATATTGTACTCATATTATTTTCTTCTTAAATTTCAAAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTTTTCATATTGTACTCATATTATTTTCTTCTTAAATTTCAAAG  1095

seq1  TTAGGATAAGTTATATACCTAACATTCTGAATTGAACTAAAAGTTTGCAG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATAAGTTATATACCTAACATTCTGAATTGAACTAAAAGTTTGCAG  1145

seq1  AGAATTC  1147
      |||||||
seq2  AGAATTC  1152


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