BAC Information

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BAC

Clone NameB6Ng01-247F02
Chromosome3 (Build37)
Map Location 50,376,414 - 50,515,007
singlet/doubletdoublet
Overlap geneEG621304, LOC100039667
Upstream geneLOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
Downstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247F02.bB6Ng01-247F02.g
ACCGA055683GA055684
length1,174900
definitionB6Ng01-247F02.b B6Ng01-247F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,513,865 - 50,515,007)(50,376,414 - 50,376,991)
sequence
aaccaagcgcatttgtaagagagaagtgttcaggttgccatattccccaa
tgtagtgagtcacactcttatagggcacccccattgattcttaggcacct
cccttatcccaggtctctgtcatatcctggagatggctccaacctcctca
gccccatctattgcagatttccatttattttcatggctgtctaaacatct
cctctgtccttccacatacctgatcccgaatcttccattcctctcactac
cccccccctcagttccctcccatcttctgcctcttgtgactattttaagc
ctccttcttctaagtgagattcaagtgtcctggcttggattcaagcgggc
ctgggggattcatgcctgtcatcccctcctgcaggacatccaggaaaaga
agtgaaaattctacctagtctgggctcttgcaattagggcctacctcaag
atgaacaaaaaaacataatatagctaccccctattcttttccaatggaga
aaaatgcattacttcacccaaggagtcagtttcattgtaataaggtcccc
agtgatgaatctggacatgtacaatacatcgtatactttactggtctaac
ggatagtatttaaaatgttcttatcacaaagatgagaaacatttgaagtg
acagataatcattaccccgatttgaccattgcataatgtgcatggtattt
tttccctatgaaaacattgattatgtccctcaaatatacaatacacttat
tatttcaattaaaaatataaggaccccctcccaaagctcccatcaatggt
agacaccttacaatagcaaatggtgccctttgtgcagcaagaaagaacag
tcctgaattacccggtttattcagcttcacttgtatagggaagactgact
gcaagtgtcttgaggtgttgcatttctgacttgttccctccccgtgtctg
gaggtagggaagtgtggtcttccttctctacctcctgttccttgttgaca
tgtaaacctctcaacttcatatttagctgccctctcatatgtattagttt
atctttgggggggggaaaggtgatcaatatttggtcaaccagtcatgctt
tgagggcctggctcagatgagtgaaaatacctagggagatcttagcgctc
tacagaagcctggacaagctgcaa
gaattcagctcaccatttttatctaggtctcagggctgtactcaactttg
tcaagagaaattgtaaaaaaaagtcaaaatctgacctgagccctggggga
gctgactctgggcactggctttccacccactctgcctatacccagaggca
gcttgatctcgaggagttctgacacagtcaggataacaggctcacaggct
gcagtcagagacagcaaggccagttaccaccagagataaccagatggtga
gaggcaagcacaagaacataagcaacagaaaccaatgtgacttggcaata
tcagaacccagtgatcccaccaaagcaagccctagatactacaacatatc
tgaaaagcaagattcagatctaaaatcccatttcatgaagatgatagagg
actttaaaatggacataatacaattcttttaaagaaagtcagggtgactg
gagagatgactcagtgattaagaacactgactgttcttccaaaggtcctg
agttcaattcccagcaaccacatggtggctcacaaccatctgtaatgggg
tttggtgctctcttctggtgtctctgaatcagctacactgtacctatata
aataaaataaatacatgcatgccatttaaaaaaaaagaaaagaaaaaaga
aattcataacataggtaaacaggtagaagcccttgcagaggaaataaatt
actctcataaagtacaggaaaatacaatcaaacaggtgaaggaattgaac
aacactatccagggtctataaatagaaatagaaacattaaaaaaaaaaca
caaagagagacaagcctggatatggaaaacctagtaaagagagcagagtc
acagatgcaagcatcaccaacagaatacaagagatagaagagagaatctc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50513865_50515007
seq2: B6Ng01-247F02.b_29_1174 (reverse)

seq1  TTGCAGCTTGGCTCAGGCTCTGGTAGA-CGCTAAGAATCTCCCTAGGTAT  49
      |||||||||| | ||||||   ||||| ||||||| ||||||||||||| 
seq2  TTGCAGCTTGTC-CAGGCTTCTGTAGAGCGCTAAG-ATCTCCCTAGGTA-  47

seq1  TTTTTCACTCTTCTGAACCAAGCCCTCAAAAGCAATGACTTGTTGA-CAA  98
       ||||||||| ||||| ||| |||||| ||||| |||||| ||||| |||
seq2  -TTTTCACTCATCTGAGCCAGGCCCTC-AAAGC-ATGACTGGTTGACCAA  94

seq1  ATATTGATCACTTT---CCCCCCCAAAGATAAACTAATACATATGAGAGG  145
      ||||||||||| ||   |||||||||||||||||||||||||||||||||
seq2  ATATTGATCACCTTTCCCCCCCCCAAAGATAAACTAATACATATGAGAGG  144

seq1  GCAGCTAAATATGAAGTTGAGAGGTTTACATTGTCAAACAAGG-ACAGGA  194
      |||||||||||||||||||||||||||||| |||| ||||||| ||||||
seq2  GCAGCTAAATATGAAGTTGAGAGGTTTACA-TGTC-AACAAGGAACAGGA  192

seq1  GGTAGAGAAGGAAGACCACACTTCCCTACCTCCAGACACGGGGAGGGAAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGAAGGAAGACCACACTTCCCTACCTCCAGACACGGGGAGGGAAC  242

seq1  AAGTCAGAAATGCAACACCTCAAGACACTTGCAGTCAGTCTTCCCTATAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGAAATGCAACACCTCAAGACACTTGCAGTCAGTCTTCCCTATAC  292

seq1  AAGTGAAGCTGAATAAACCGGGTAATTCAGGACTGTTCTTTCTTGCTGCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGCTGAATAAACCGGGTAATTCAGGACTGTTCTTTCTTGCTGCA  342

seq1  CAAAGGGCACCATTTGCTATTGTAAGGTGTCTACCATTGATGGGAGCTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCACCATTTGCTATTGTAAGGTGTCTACCATTGATGGGAGCTTT  392

seq1  GGGAGGGGGTCCTTATATTTTTAATTGAAATAATAAGTGTATTGTATATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGTCCTTATATTTTTAATTGAAATAATAAGTGTATTGTATATT  442

seq1  TGAGGGACATAATCAATGTTTTCATAGGGAAAAAATACCATGCACATTAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGACATAATCAATGTTTTCATAGGGAAAAAATACCATGCACATTAT  492

seq1  GCAATGGTCAAATCGGGGTAATGATTATCTGTCACTTCAAATGTTTCTCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGTCAAATCGGGGTAATGATTATCTGTCACTTCAAATGTTTCTCA  542

seq1  TCTTTGTGATAAGAACATTTTAAATACTATCCGTTAGACCAGTAAAGTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGATAAGAACATTTTAAATACTATCCGTTAGACCAGTAAAGTAT  592

seq1  ACGATGTATTGTACATGTCCAGATTCATCACTGGGGACCTTATTACAATG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGTATTGTACATGTCCAGATTCATCACTGGGGACCTTATTACAATG  642

seq1  AAACTGACTCCTTGGGTGAAGTAATGCATTTTTCTCCATTGGAAAAGAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACTCCTTGGGTGAAGTAATGCATTTTTCTCCATTGGAAAAGAAT  692

seq1  AGGGGGTAGCTATATTATGTTTTTTTGTTCATCTTGAGGTAGGCCCTAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTAGCTATATTATGTTTTTTTGTTCATCTTGAGGTAGGCCCTAAT  742

seq1  TGCAAGAGCCCAGACTAGGTAGAATTTTCACTTCTTTTCCTGGATGTCCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAGCCCAGACTAGGTAGAATTTTCACTTCTTTTCCTGGATGTCCT  792

seq1  GCAGGAGGGGATGACAGGCATGAATCCCCCAGGCCCGCTTGAATCCAAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGGGATGACAGGCATGAATCCCCCAGGCCCGCTTGAATCCAAGC  842

seq1  CAGGACACTTGAATCTCACTTAGAAGAAGGAGGCTTAAAATAGTCACAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACTTGAATCTCACTTAGAAGAAGGAGGCTTAAAATAGTCACAAG  892

seq1  AGGCAGAAGATGGGAGGGAACTGAGGGGGGGGGTAGTGAGAGGAATGGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAGATGGGAGGGAACTGAGGGGGGGGGTAGTGAGAGGAATGGAA  942

seq1  GATTCGGGATCAGGTATGTGGAAGGACAGAGGAGATGTTTAGACAGCCAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGGGATCAGGTATGTGGAAGGACAGAGGAGATGTTTAGACAGCCAT  992

seq1  GAAAATAAATGGAAATCTGCAATAGATGGGGCTGAGGAGGTTGGAGCCAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAATGGAAATCTGCAATAGATGGGGCTGAGGAGGTTGGAGCCAT  1042

seq1  CTCCAGGATATGACAGAGACCTGGGATAAGGGAGGTGCCTAAGAATCAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGATATGACAGAGACCTGGGATAAGGGAGGTGCCTAAGAATCAAT  1092

seq1  GGGGGTGACCT-TA--GGTGTGACTCACTACATTGGGG-ATATGG-AACC  1139
      ||||||| ||| ||   ||||||||||||||||||||| |||||| ||||
seq2  GGGGGTGCCCTATAAGAGTGTGACTCACTACATTGGGGAATATGGCAACC  1142

seq1  TGAA  1143
      ||||
seq2  TGAA  1146

seq1: chr3_50376414_50376991
seq2: B6Ng01-247F02.g_65_642

seq1  GAATTCAGCTCACCATTTTTATCTAGGTCTCAGGGCTGTACTCAACTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCACCATTTTTATCTAGGTCTCAGGGCTGTACTCAACTTTG  50

seq1  TCAAGAGAAATTGTAAAAAAAAGTCAAAATCTGACCTGAGCCCTGGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGAAATTGTAAAAAAAAGTCAAAATCTGACCTGAGCCCTGGGGGA  100

seq1  GCTGACTCTGGGCACTGGCTTTCCACCCACTCTGCCTATACCCAGAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTCTGGGCACTGGCTTTCCACCCACTCTGCCTATACCCAGAGGCA  150

seq1  GCTTGATCTCGAGGAGTTCTGACACAGTCAGGATAACAGGCTCACAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATCTCGAGGAGTTCTGACACAGTCAGGATAACAGGCTCACAGGCT  200

seq1  GCAGTCAGAGACAGCAAGGCCAGTTACCACCAGAGATAACCAGATGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGAGACAGCAAGGCCAGTTACCACCAGAGATAACCAGATGGTGA  250

seq1  GAGGCAAGCACAAGAACATAAGCAACAGAAACCAATGTGACTTGGCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGCACAAGAACATAAGCAACAGAAACCAATGTGACTTGGCAATA  300

seq1  TCAGAACCCAGTGATCCCACCAAAGCAAGCCCTAGATACTACAACATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCCAGTGATCCCACCAAAGCAAGCCCTAGATACTACAACATATC  350

seq1  TGAAAAGCAAGATTCAGATCTAAAATCCCATTTCATGAAGATGATAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCAAGATTCAGATCTAAAATCCCATTTCATGAAGATGATAGAGG  400

seq1  ACTTTAAAATGGACATAATACAATTCTTTTAAAGAAAGTCAGGGTGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAATGGACATAATACAATTCTTTTAAAGAAAGTCAGGGTGACTG  450

seq1  GAGAGATGACTCAGTGATTAAGAACACTGACTGTTCTTCCAAAGGTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGACTCAGTGATTAAGAACACTGACTGTTCTTCCAAAGGTCCTG  500

seq1  AGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGG  550

seq1  TTTGGTGCTCTCTTCTGGTGTCTCTGAA  578
      ||||||||||||||||||||||||||||
seq2  TTTGGTGCTCTCTTCTGGTGTCTCTGAA  578