BAC Information

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BAC

Clone NameB6Ng01-247G03
Chromosome8 (Build37)3 (Build37)
Map Location 77,927,784 - 77,928,78340,521,779 - 40,522,584
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211
Downstream geneLOC100039229, 1700007B14Rik, LOC666036, LOC100039185, EG631594, LOC666226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247G03.bB6Ng01-247G03.g
ACCGA055731GA055732
length1,0151,011
definitionB6Ng01-247G03.b B6Ng01-247G03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,927,784 - 77,928,783)(40,521,779 - 40,522,584)
sequence
gaattccacatacaggtaacagctttttggatagccctcctctccagttg
ttcaggacctacatgaagacaaagatgcatatctgctacatatgtgtggg
aggcctaggtccagcccatttatgttctttagtttatggttcactctctg
agagccctaaaggtctagattagttgattctatccctccaggacccacaa
tccttcctcctattttgccataagagtccccaagctccatctacagtttg
ggtgcggatgtctgcatctctcttaagaggtagatggaggaagggaaagg
aaacagggaggagaattagcatgttttctggatcaggtgagggagagaca
cgagaaatagtcaaatggctatgagaatgaatgagcttgctaactgatgc
ttccaggtaaaatgatctccctgaatgtgaaacaaaaaattgtataattc
tgggtacattactcagtaacttgaaagtcatataaacatgtgagtctgag
ttcaatttccagaaccctgtgaaaatgctggatatggtggtttacacttg
taacctagtgttcctcatgtgacagcctgtctcaaataaaagatgagcag
ccataaagaatgacacctgaggttacactctggccttcatagtatgtgca
gatacatatatattcacacacacacacacacacacacacacacacacaca
cacacacacactgaataccaaaatcagtcctctattagtaaggcaatatt
tttttttagcacaattctacctacttggacaaagaatgagatccatggat
actgagtttttttggtgtttttgtttttttttttttgctgtgtttgcttg
gttttttagtttattggttgtattaagatttgaggggcaacagctttatg
gactatctcaagaggtatcttgatgattttagatgaggatccagaacaag
aagtgagcaccagtgatgcatcaatgcggtatttggaagcagagtctagt
tgaattcagagatgg
gaattcctgtgtgtgtgcaaacatgtatctgtgtttcatgtggtttttgc
cttggctctttttgttgtttggttgttttgtcatattcagatttgtttgt
tttttgatttatcttatcttcttcctatcccctacatggcaacttgtttt
ctaaggagagagagcaggggtatggatctggatgggaggagaggtgggga
tcagaaagaaaagcattgagtaattattggaattacattccatgttaatc
caagtggacatgaaacaaaaaatacatgccattccatctgacacagtaca
gttaatattcttctcaagtatatgtggaaactttttcagaataggagaat
tcttatgttaaataacaaaacaagtcttaaggagactgaaatattaaata
cctttgctgactagaatggaatggcttaaacataagaggatgaaagtgca
atattgtaaaatcttaaattagtaacataattgaaacttctattgactat
tagccttccttgggttgtttagtttcatgtttaatgtagtgttggatgag
tagttatataaattcagggtcactattctgcctgagcagtctgcctccca
ttctccttttgcttatatatgcctatcatatttttataagttctacatgc
actacatgaacttttttgaataataaaatagatattattcaccccagtca
gtaatctgccttcttttttattcatggaggaaataatagatttactagaa
ttaaagattcaagttataagtctttatgttatgtgtcatgttttggttga
ctgatatgaagaaagtagagcttcacttgagtttgatcaggcagaagggg
tgatgactggcacttggacttgagcagatgggcctctcaagggaccaacc
cacatacctagccctttctcttcagatcacttcctgtgggagtcgtcttc
ttacctccttttcatgggtgtattttgtataagcaagtcttcctcaaaac
tgcctccccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_77927784_77928783
seq2: B6Ng01-247G03.b_41_1055

seq1  GAATTCCACATACAGGTAACAGCTTTTTGGATAGCCCTCCTCTCCAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATACAGGTAACAGCTTTTTGGATAGCCCTCCTCTCCAGTTG  50

seq1  TTCAGGACCTACATGAAGACAAAGATGCATATCTGCTACATATGTGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACCTACATGAAGACAAAGATGCATATCTGCTACATATGTGTGGG  100

seq1  AGGCCTAGGTCCAGCCCATTTATGTTCTTTAGTTTATGGTTCACTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAGGTCCAGCCCATTTATGTTCTTTAGTTTATGGTTCACTCTCTG  150

seq1  AGAGCCCTAAAGGTCTAGATTAGTTGATTCTATCCCTCCAGGACCCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCTAAAGGTCTAGATTAGTTGATTCTATCCCTCCAGGACCCACAA  200

seq1  TCCTTCCTCCTATTTTGCCATAAGAGTCCCCAAGCTCCATCTACAGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTCCTATTTTGCCATAAGAGTCCCCAAGCTCCATCTACAGTTTG  250

seq1  GGTGCGGATGTCTGCATCTCTCTTAAGAGGTAGATGGAGGAAGGGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGGATGTCTGCATCTCTCTTAAGAGGTAGATGGAGGAAGGGAAAGG  300

seq1  AAACAGGGAGGAGAATTAGCATGTTTTCTGGATCAGGTGAGGGAGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGAGGAGAATTAGCATGTTTTCTGGATCAGGTGAGGGAGAGACA  350

seq1  CGAGAAATAGTCAAATGGCTATGAGAATGAATGAGCTTGCTAACTGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAATAGTCAAATGGCTATGAGAATGAATGAGCTTGCTAACTGATGC  400

seq1  TTCCAGGTAAAATGATCTCCCTGAATGTGAAACAAAAAATTGTATAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTAAAATGATCTCCCTGAATGTGAAACAAAAAATTGTATAATTC  450

seq1  TGGGTACATTACTCAGTAACTTGAAAGTCATATAAACATGTGAGTCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACATTACTCAGTAACTTGAAAGTCATATAAACATGTGAGTCTGAG  500

seq1  TTCAATTTCCAGAACCCTGTGAAAATGCTGGATATGGTGGTTTACACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTCCAGAACCCTGTGAAAATGCTGGATATGGTGGTTTACACTTG  550

seq1  TAACCTAGTGTTCCTCATGTGACAGCCTGTCTCAAATAAAAGATGAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAGTGTTCCTCATGTGACAGCCTGTCTCAAATAAAAGATGAGCAG  600

seq1  CCATAAAGAATGACACCTGAGGTTACACTCTGGCCTTCATAGTATGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGAATGACACCTGAGGTTACACTCTGGCCTTCATAGTATGTGCA  650

seq1  GATACATATATATTCACACACACACACACACACACACACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATATATATTCACACACACACACACACACACACACACACACACACA  700

seq1  CACACACACACTGAATACCAAAATCAGTCCTCTATTAGTAAGGCAATA-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACACACACACTGAATACCAAAATCAGTCCTCTATTAGTAAGGCAATATT  750

seq1  TTTTTTTAGCACAATTCTACCTACTTGGACAAAGAATGAGATCCATGGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGCACAATTCTACCTACTTGGACAAAGAATGAGATCCATGGAT  800

seq1  ACTGAGTTTTTTTGGTGTTTTT-TTTTTTTTTTTTTG-TTTGTTTGTTTG  847
      |||||||||||||||||||||| |||||||||||||| | |||||| |||
seq2  ACTGAGTTTTTTTGGTGTTTTTGTTTTTTTTTTTTTGCTGTGTTTGCTTG  850

seq1  --TTTTTTGTTT-TTTGTTTTTTTAAGATTTGAGGGGCAA-AG-TTTATG  892
        ||||| |||| || ||| | |||||||||||||||||| || ||||||
seq2  GTTTTTTAGTTTATTGGTTGTATTAAGATTTGAGGGGCAACAGCTTTATG  900

seq1  GACTA-GTCAAGA-GTTTCTTGATGATTTTAAGATGAATAACCAGAACAA  940
      |||||  |||||| || ||||||||||||| ||||||  | |||||||||
seq2  GACTATCTCAAGAGGTATCTTGATGATTTT-AGATGAGGATCCAGAACAA  949

seq1  G-AGTGAG-ACCAGTGATTGATAAATG-GGTATTTG--AGGAGA-TCTAG  984
      | |||||| |||||||||  || |||| ||||||||  || ||| |||||
seq2  GAAGTGAGCACCAGTGATGCATCAATGCGGTATTTGGAAGCAGAGTCTAG  999

seq1  TTGAAATCAGAGATGG  1000
      ||||| ||||||||||
seq2  TTGAATTCAGAGATGG  1015

seq1: chr3_40521779_40522584
seq2: B6Ng01-247G03.g_265_1075

seq1  TCAGAAAGAAAAGCATTGAGTAATTATTGGAATTACATTCCATGTTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGAAAAGCATTGAGTAATTATTGGAATTACATTCCATGTTAATC  50

seq1  CAAGTGGACATGAAACAAAAAATACATGCCATTCCATCTGACACAGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGACATGAAACAAAAAATACATGCCATTCCATCTGACACAGTACA  100

seq1  GTTAATATTCTTCTCAAGTATATGTGGAAACTTTTTCAGAATAGGAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATTCTTCTCAAGTATATGTGGAAACTTTTTCAGAATAGGAGAAT  150

seq1  TCTTATGTTAAATAACAAAACAAGTCTTAAGGAGACTGAAATATTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTTAAATAACAAAACAAGTCTTAAGGAGACTGAAATATTAAATA  200

seq1  CCTTTGCTGACTAGAATGGAATGGCTTAAACATAAGAGGATGAAAGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTGACTAGAATGGAATGGCTTAAACATAAGAGGATGAAAGTGCA  250

seq1  ATATTGTAAAATCTTAAATTAGTAACATAATTGAAACTTCTATTGACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAAAATCTTAAATTAGTAACATAATTGAAACTTCTATTGACTAT  300

seq1  TAGCCTTCCTTGGGTTGTTTAGTTTCATGTTTAATGTAGTGTTGGATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTCCTTGGGTTGTTTAGTTTCATGTTTAATGTAGTGTTGGATGAG  350

seq1  TAGTTATATAAATTCAGGGTCACTATTCTGCCTGAGCAGTCTGCCTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATATAAATTCAGGGTCACTATTCTGCCTGAGCAGTCTGCCTCCCA  400

seq1  TTCTCCTTTTGCTTATATTTGCCTATCATATTTTTATAAGTTCTACATGC  450
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTCCTTTTGCTTATATATGCCTATCATATTTTTATAAGTTCTACATGC  450

seq1  ACTACATGAACTTTTTTGAATAATAAAATAGATATTATTCACCCCAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTACATGAACTTTTTTGAATAATAAAATAGATATTATTCACCCC-AGTC  499

seq1  AGTAATCTGCCTTCTTTTTTATTCATGGAGGAAATAATAGATTTACTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCTGCCTTCTTTTTTATTCATGGAGGAAATAATAGATTTACTAGA  549

seq1  ATTTAAGATTCAGGTTATAAGTCTTTATGTTATGTGTCATG-TTTGGTTG  599
      ||| |||||||| |||||||||||||||||||||||||||| ||||||||
seq2  ATTAAAGATTCAAGTTATAAGTCTTTATGTTATGTGTCATGTTTTGGTTG  599

seq1  ACTGATAAGAAG-AAGTAGAGCTTCACTTGAGTTTGATCAGGCAGAAGGG  648
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  ACTGATATGAAGAAAGTAGAGCTTCACTTGAGTTTGATCAGGCAGAAGGG  649

seq1  GTGATGACTGGCACTTGGACTTGAGCAGAT-GGCCTCTCAAGGGACCAA-  696
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  GTGATGACTGGCACTTGGACTTGAGCAGATGGGCCTCTCAAGGGACCAAC  699

seq1  CCACATACCT-GCCCTTTCTCTCCAGGATCACCTCCTGTGGGAGTCGTCT  745
      |||||||||| ||||||||||| || |||||| |||||||||||||||||
seq2  CCACATACCTAGCCCTTTCTCTTCA-GATCACTTCCTGTGGGAGTCGTCT  748

seq1  TCTTACCTCCTTTTCATGGGTGTATTTTGTATAAGC-AGTCTTCCTCAAT  794
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TCTTACCTCCTTTTCATGGGTGTATTTTGTATAAGCAAGTCTTCCTCAAA  798

seq1  ACTG-CTCCCCTA  806
      |||| ||||||||
seq2  ACTGCCTCCCCTA  811