BAC Information

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BAC

Clone NameB6Ng01-247H16
Chromosome3 (Build37)
Map Location 15,921,590 - 16,082,278
singlet/doubletdoublet
Overlap genenone
Upstream geneEG634323, LOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484
Downstream geneYthdf3, LOC100040034, LOC100040059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247H16.bB6Ng01-247H16.g
ACCGA055804GA055805
length1,1011,136
definitionB6Ng01-247H16.b B6Ng01-247H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,921,590 - 15,922,686)(16,081,147 - 16,082,278)
sequence
gaattccaagcccagggttggctcaagggctacctggggcattggtgaag
gccaagaagcaaagttcaatttttcttaggtatttggcaagtcattgctt
ggaggcacctataataaaacaatactgaaagaaaacacacagatcaattc
acaaggacaagtttggagcattccttatatggcataaacagccactcagg
aatcatgagcaggaactaatcagagcatgtcaataatcctgcttttcata
agaaagaaaataaggctacatggaaagaccaagaaggcaagggatgtgtg
gggacctattatagatgaattgtttgtactctacatatcaatgccgaaat
cacagtaacaaataatgtaactgtgtttggtagagagtttttcaataggc
aagggtctgctgaggtcatttgtatgaatcctgacccaatgtaactggtt
tcctttcaagacatggacaagatccacagacataggatgaaataagattg
tatgaagacataggaaaaaagtgcaacttagaagagaaagcacagaagaa
aatagttttgtggagactttgaccctggacttccaggctccagaattgtg
aggaaatggatgtctgtggtttttgccaatagcctgtggcacctttccaa
ggtaacataagcattaggaaagtaaattaatgatatagcttctcagagca
gcagcattcagtgagaagactgatatgagatgaggaaggaaatagaggac
agaggacaaaatgaggaagctaactaagaaaggatgatagctgagtattg
ccagaaacattgcatcttaagtcatgtcactaacctgcatgccagcctcg
atgtggcaggaggctaacagagtttcctaaagttttgagccaggcagccc
cacccacttctttggaactgactcactgggtgcagtgtacctcagagtga
taatgatgcaaatgtcattttgctgaaagtaaattttgtcacaaagtgtg
tcttaacttctcagtttccagtcaagcaatctggatcagagagagacttg
agactcagaaagttggaaaagaaaagaaatgggggggggggggggggatt
c

gaattccacgaatctcagtttgaattcttacctagcaatgattagtttat
aaccttggagaagtctcttaacctaaaccttggcgtcatgagtaaactaa
ggcctgacatacataatcagccacttcttgtttcttcactgagtgagtcc
ccgcatcaaaactgtaactcagtgagtactcctgaaatgtcaggcaatat
aattgattaaatagtcacagtatcttgtgtgataactgctgctacaaaaa
ttgaaggctgggtgagggagcacatacctttaaactcagcacttgagggt
ggatctctgtgagtttgaggctagcctgatctatatgagttccaggacag
ccaaggctacgtttcaaaaattaaaaattttttaaaacctcattctgtag
ccgaggctgtcctcgaactcagaaatcagcctgcctcagcctccgagtgc
tgggattaaaggtatgcgccaccactgcctggctccaaagtaagtttaag
aaatagtccaaggccagcaaaatggctgggcagataagggcacttacacc
aaaaactgacaacatgagttctatacctggaacccacgtgataggagaga
accactcctgaaaatgtttttccgatccccgtgtgtgtgcccctgggatc
acctctagaacactccatcagtgccgcagaggtggctgttctccttccag
ccatcatcacaaccccaccacactaaaaggaaagagaaaagagcggggca
ggcagggagagcagagtgctctctccggatatttcatagcaattttattt
cccacacctgtctacctcctactaactacaacattgttctctgaaaattc
ttggttgcagggaaactgaaacatgtattgtgaaatatatgttcaactga
ggatcaagaattgttacccatcccaggaagaataatagatgacaacagag
acataataagtaattgaccttgtgtgtaaactctttcccaaatttcactc
tgctagctagtactatttaattttttctttgaaacttttttcagtatttt
attactaagatttttagattctggtattacctcagttaacagtagatgag
cagcacagaaaagttataggactgaatgatgcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_15921590_15922686
seq2: B6Ng01-247H16.b_47_1147

seq1  GAATTCCAAGCCCAGGGTTGGCTCAAGGGCTACCTGGGGCATTGGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAGGGTTGGCTCAAGGGCTACCTGGGGCATTGGTGAAG  50

seq1  GCCAAGAAGCAAAGTTCAATTTTTCTTAGGTATTTGGCAAGTCATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAAGCAAAGTTCAATTTTTCTTAGGTATTTGGCAAGTCATTGCTT  100

seq1  GGAGGCACCTATAATAAAACAATACTGAAAGAAAACACACAGATCAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACCTATAATAAAACAATACTGAAAGAAAACACACAGATCAATTC  150

seq1  ACAAGGACAAGTTTGGAGCATTCCTTATATGGCATAAACAGCCACTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGACAAGTTTGGAGCATTCCTTATATGGCATAAACAGCCACTCAGG  200

seq1  AATCATGAGCAGGAACTAATCAGAGCATGTCAATAATCCTGCTTTTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAGCAGGAACTAATCAGAGCATGTCAATAATCCTGCTTTTCATA  250

seq1  AGAAAGAAAATAAGGCTACATGGAAAGACCAAGAAGGCAAGGGATGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAATAAGGCTACATGGAAAGACCAAGAAGGCAAGGGATGTGTG  300

seq1  GGGACCTATTATAGATGAATTGTTTGTACTCTACATATCAATGCCGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTATTATAGATGAATTGTTTGTACTCTACATATCAATGCCGAAAT  350

seq1  CACAGTAACAAATAATGTAACTGTGTTTGGTAGAGAGTTTTTCAATAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAACAAATAATGTAACTGTGTTTGGTAGAGAGTTTTTCAATAGGC  400

seq1  AAGGGTCTGCTGAGGTCATTTGTATGAATCCTGACCCAATGTAACTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCTGCTGAGGTCATTTGTATGAATCCTGACCCAATGTAACTGGTT  450

seq1  TCCTTTCAAGACATGGACAAGATCCACAGACATAGGATGAAATAAGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCAAGACATGGACAAGATCCACAGACATAGGATGAAATAAGATTG  500

seq1  TATGAAGACATAGGAAAAAAGTGCAACTTAGAAGAGAAAGCACAGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGACATAGGAAAAAAGTGCAACTTAGAAGAGAAAGCACAGAAGAA  550

seq1  AATAGTTTTGTGGAGACTTTGACCCTGGACTTCCAGGCTCCAGAATTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTTGTGGAGACTTTGACCCTGGACTTCCAGGCTCCAGAATTGTG  600

seq1  AGGAAATGGATGTCTGTGGTTTTTGCCAATAGCCTGTGGCACCTTTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGATGTCTGTGGTTTTTGCCAATAGCCTGTGGCACCTTTCCAA  650

seq1  GGTAACATAAGCATTAGGAAAGTAAATTAATGATATAGCTTCTCAGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACATAAGCATTAGGAAAGTAAATTAATGATATAGCTTCTCAGAGCA  700

seq1  GCAGCATTCAGTGAGAAGACTGATATGAGATGAGGAAGGAAATAGAGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTCAGTGAGAAGACTGATATGAGATGAGGAAGGAAATAGAGGAC  750

seq1  AGAGGACAAAATGAGGAAGCTAACTAAGAAAGGATGATAGCTGAGTATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAAAATGAGGAAGCTAACTAAGAAAGGATGATAGCTGAGTATTG  800

seq1  CCAGAAACATTGCATCTTAAGTCATGTCACTAACCTGCATGCCAGCCTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACATTGCATCTTAAGTCATGTCACTAACCTGCATGCCAGCCTCG  850

seq1  ATGTGGCAGGAGGCTAACAGAGTTTCCT-AAGTTTTGAGCCAGGCAGCCC  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGTGGCAGGAGGCTAACAGAGTTTCCTAAAGTTTTGAGCCAGGCAGCCC  900

seq1  CACCCACTTCTTTGGAACTGACTCACTGGGTGCAGTGTACCTCAGAGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTTCTTTGGAACTGACTCACTGGGTGCAGTGTACCTCAGAGTGA  950

seq1  TAATGATGCAAATGTCATTTTGCTGAAAGT-AATTTTGTCACAAAGTGTG  998
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  TAATGATGCAAATGTCATTTTGCTGAAAGTAAATTTTGTCACAAAGTGT-  999

seq1  GTCTTAAC-TCTCAG-TTCCAGTTCAAGGCCAATCTGGGAATCAGAGAGA  1046
      |||||||| |||||| |||||| |||||  ||||||||  ||||||||||
seq2  GTCTTAACTTCTCAGTTTCCAG-TCAAG--CAATCTGG--ATCAGAGAGA  1044

seq1  GAC-TGAGACTCAGAAAGTTGGAAAAAGAAAGAA-----TGGGGGGGGGG  1090
      ||| ||||||||||||||||||||||  ||||||      ||||||||||
seq2  GACTTGAGACTCAGAAAGTTGGAAAAGAAAAGAAATGGGGGGGGGGGGGG  1094

seq1  GGGATTC  1097
      |||||||
seq2  GGGATTC  1101


seq1: chr3_16081147_16082278
seq2: B6Ng01-247H16.g_67_1202 (reverse)

seq1  AAATGCATCATTCAGTCCTATAAACTATCTGTGCTTGGCTCATCTACTGT  50
      |||||||||||||||||||||||  | ||||||||  |||||||||||||
seq2  AAATGCATCATTCAGTCCTATAACTTTTCTGTGCT--GCTCATCTACTGT  48

seq1  TACTTGAAGGTAATA-CAGAATCTTAAAAATCTTAGTA--TAAATACTGG  97
      ||  || |||||||| ||||||| ||||||||||||||   |||||||| 
seq2  TAACTG-AGGTAATACCAGAATC-TAAAAATCTTAGTAATAAAATACTGA  96

seq1  AAAAAGTTTCAAAGAAAAATTTAAATAGTACTAGCTAGCAGAGTG-AATT  146
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  AAAAAGTTTCAAAGAAAAAATTAAATAGTACTAGCTAGCAGAGTGAAATT  146

seq1  TGGGAAAGAGTTTTACACAC-AGGTC-ATTACTTATTATGTCTCTGTTGT  194
      |||||||||| ||||||||| ||||| |||||||||||||||||||||||
seq2  TGGGAAAGAG-TTTACACACAAGGTCAATTACTTATTATGTCTCTGTTGT  195

seq1  CATCTATTATTCTTCCTGGG--TGGTAAC-ATTCTTGATCCTCAGTTGAA  241
      ||||||||||||||||||||   |||||| ||||||||||||||||||||
seq2  CATCTATTATTCTTCCTGGGATGGGTAACAATTCTTGATCCTCAGTTGAA  245

seq1  CATATATTTCACAATACATGTTTCAGTTCCCTTGCAACCAAGAATTTTCA  291
      |||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  CATATATTTCACAATACATGTTTCAGTTTCCCTGCAACCAAGAATTTTCA  295

seq1  GAGAACAATGTTGTAGTTAGTAGGAGGTAGACAGGTGTGGGAAATAAAAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAATGTTGTAGTTAGTAGGAGGTAGACAGGTGTGGGAAATAAAAT  345

seq1  TGCTATGAAATATCCGGAGAGAGCACTCTGCTCTCCCTGCCTGCCCCGCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGAAATATCCGGAGAGAGCACTCTGCTCTCCCTGCCTGCCCCGCT  395

seq1  CTTTTCTCTTTCCTTTTAGTGTGGTGGGGTTGTGATGATGGCTGGAAGGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCTTTCCTTTTAGTGTGGTGGGGTTGTGATGATGGCTGGAAGGA  445

seq1  GAACAGCCACCTCTGCGGCACTGATGGAGTGTTCTAGAGGTGATCCCAGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCACCTCTGCGGCACTGATGGAGTGTTCTAGAGGTGATCCCAGG  495

seq1  GGCACACACACGGGGATCGGAAAAACATTTTCAGGAGTGGTTCTCTCCTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACACGGGGATCGGAAAAACATTTTCAGGAGTGGTTCTCTCCTA  545

seq1  TCACGTGGGTTCCAGGTATAGAACTCATGTTGTCAGTTTTTGGTGTAAGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGGGTTCCAGGTATAGAACTCATGTTGTCAGTTTTTGGTGTAAGT  595

seq1  GCCCTTATCTGCCCAGCCATTTTGCTGGCCTTGGACTATTTCTTAAACTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTATCTGCCCAGCCATTTTGCTGGCCTTGGACTATTTCTTAAACTT  645

seq1  ACTTTGGAGCCAGGCAGTGGTGGCGCATACCTTTAATCCCAGCACTCGGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAGCCAGGCAGTGGTGGCGCATACCTTTAATCCCAGCACTCGGA  695

seq1  GGCTGAGGCAGGCTGATTTCTGAGTTCGAGGACAGCCTCGGCTACAGAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGCAGGCTGATTTCTGAGTTCGAGGACAGCCTCGGCTACAGAAT  745

seq1  GAGGTTTTAAAAAATTTTTAATTTTTGAAACGTAGCCTTGGCTGTCCTGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTAAAAAATTTTTAATTTTTGAAACGTAGCCTTGGCTGTCCTGG  795

seq1  AACTCATATAGATCAGGCTAGCCTCAAACTCACAGAGATCCACCCTCAAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATATAGATCAGGCTAGCCTCAAACTCACAGAGATCCACCCTCAAG  845

seq1  TGCTGAGTTTAAAGGTATGTGCTCCCTCACCCAGCCTTCAATTTTTGTAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTTTAAAGGTATGTGCTCCCTCACCCAGCCTTCAATTTTTGTAG  895

seq1  CAGCAGTTATCACACAAGATACTGTGACTATTTAATCAATTATATTGCCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTATCACACAAGATACTGTGACTATTTAATCAATTATATTGCCT  945

seq1  GACATTTCAGGAGTACTCACTGAGTTACAGTTTTGATGCGGGGACTCACT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTCAGGAGTACTCACTGAGTTACAGTTTTGATGCGGGGACTCACT  995

seq1  CAGTGAAGAAACAAGAAGTGGCTGATTATGTATGTCAGGCCTTAGTTTAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGAAACAAGAAGTGGCTGATTATGTATGTCAGGCCTTAGTTTAC  1045

seq1  TCATGACGCCAAGGTTTAGGTTAAGAGACTTCTCCAAGGTTATAAACTAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACGCCAAGGTTTAGGTTAAGAGACTTCTCCAAGGTTATAAACTAA  1095

seq1  TCATTGCTAGGTAAGAATTCAAACTGAGATTCGTGGAATTC  1132
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTAGGTAAGAATTCAAACTGAGATTCGTGGAATTC  1136


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