BAC Information

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BAC

Clone NameB6Ng01-247I06
Chromosome3 (Build37)
Map Location 5,286,673 - 5,287,834
singlet/doubletsinglet
Overlap geneZfhx4
Upstream geneLOC620283
Downstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247I06.bB6Ng01-247I06.g
ACCGA055830GA055831
length4701,163
definitionB6Ng01-247I06.b B6Ng01-247I06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
atcccatctgcagacatcaaacctccacactattgctgatgccaagaagt
gcttgatgacaggagcctgatatggctgttccctgagaggtcctaccagc
acctgaccaatacaaacccaaccattgggctgagcccaggtattccaaag
gaagagctagagggaggactggagtcgctgaaggggactgcaaccccata
tgaagaacaatatcaattaactggaccactaagagctctcaagaactaaa
gacttcatggagggagccaggactccaaatacatatgttgcagaggatgg
ccttttctgacattaatggaaggggagagaggcttgataccccagtgtag
ggggatagtagaggggtgagtcaggagtgggtgagtgggcggaggattac
ctcctaaacgcaaaaggtagaactggaggggatgagagggattgagtaaa
gataacatttctttaaatgt
gaattccaaagtctgaccattattaagtagaaagaacaacaaaaagataa
gagtagttttagaaggaaaggggtagatgttcataagagaaaagcaggca
aaatggagattttgcttcatgaagcaggtaaagaatatcatgttaagttt
gacttataaacccaagaagtgtacagaaaaaaatatttaaataaaccaat
tataacatcttaactaaatgtgatattttattatgaagaggcattgtgga
tggatgacattttactcttcattctgtcagccccaatactgcatttaaca
ctgcattaaatactaaaaatgaaaagcaacacagaggtgcatgatgggct
tttggaaaccaagaatgtattttcattatgtgaaacatggtcttaaccaa
aagtcttagatttaatgaaacaggccttgttcttctctgtaatgtttacg
gttatgcattcttcatgcagatatctcttaagaattaattgtagaaagga
attttccagatgctgaaaattttgttagtcgtggttcccgaagtcatcac
cagtatggttattgtttttctttggaaggaaaaaagtaaattgcatgaaa
aatacaaactctaaaaataaacagcatagagaagagggattttcttgttt
gtttgttttagagactttgtaagaaaaagaaaaaagaaagaaaagaagaa
aaagcaaaaagaaaatgcaatagggtgaggatttgtgcttatgcttacct
ggatcataattaggtaaagctgacatggtttacagacagcccgatttggg
ttaactgtcagagtcctatggtcaggtactggtcacctcttaaaggtgac
tcccaagttgacagccaagtacaggggaaaggatggtgactgcattggct
agttttgtgtcaacttgacacagctggagttatcacagagaaagagcctt
cagttgaaggaaatgcctccatgagatccagctataggcattttctcaat
tagtgatcaacgggggaaaggccccttgtgggtgggacctctttggctgg
tagtctttggttctataagaggagcaggctgagcagcccaggggcagcca
gccaattaagaacatccatccatggctctgcatcagctcggctccctgac
cttgccttgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5286673_5287834
seq2: B6Ng01-247I06.g_68_1230 (reverse)

seq1  AAATCAAG--CAGGTCAGGGAGCAGGAGCTGATGCAGAAGCCATGGATGG  48
      ||||||||   ||||||||||||  |||||||||||| ||||||||||||
seq2  AAATCAAGGCAAGGTCAGGGAGC-CGAGCTGATGCAG-AGCCATGGATGG  48

seq1  ATGTTCTTTATTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCT-CTCTTA  97
      |||||||| ||||||| ||| |||||||  ||||||||||||| ||||||
seq2  ATGTTCTTAATTGGCTGGCTGCCCCTGGGCTGCTCAGCCTGCTCCTCTTA  98

seq1  TAGAACC-AAGACTACCAGCCCAAAGAAGGTCCCACCCACAAGGGGCCTT  146
      ||||||| ||||||||||| |||||| |||||||||||||||||||||||
seq2  TAGAACCAAAGACTACCAG-CCAAAG-AGGTCCCACCCACAAGGGGCCTT  146

seq1  TCCCCCGTTGATCACTAATTGAGAAAATGCCTTATAGCTGGATCTCATGG  196
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCCCCGTTGATCACTAATTGAGAAAATGCC-TATAGCTGGATCTCATGG  195

seq1  AGGCATTTCC-TCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTG  245
      |||||||||| ||||||||||   ||||||||||||||||||||||||||
seq2  AGGCATTTCCTTCAACTGAAGGCTCTTTCTCTGTGATAACTCCAGCTGTG  245

seq1  TCAAGTTGACACAAAACTAGCCAATGCAGTCACCATCC-TTCCCCTGTAC  294
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAAGTTGACACAAAACTAGCCAATGCAGTCACCATCCTTTCCCCTGTAC  295

seq1  TTGGCTGTCAACTTGGGAGTCACCTTTAAGAGGTGACCAGTACCTGACCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTCAACTTGGGAGTCACCTTTAAGAGGTGACCAGTACCTGACCA  345

seq1  TAGGACTCTGACAGTTAACCCAAATCGGGCTGTCTGTAAACCATGTCAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTCTGACAGTTAACCCAAATCGGGCTGTCTGTAAACCATGTCAGC  395

seq1  TTTACCTAATTATGATCCAGGTAAGCATAAGCACAAATCCTCACCCTATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTAATTATGATCCAGGTAAGCATAAGCACAAATCCTCACCCTATT  445

seq1  GCATTTTCTTTTTGCTTTTTCTTCTTTTCTTTCTTTTTTCTTTTTCTTAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCTTTTTGCTTTTTCTTCTTTTCTTTCTTTTTTCTTTTTCTTAC  495

seq1  AAAGTCTCTAAAACAAACAAACAAGAAAATCCCTCTTCTCTATGCTGTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTCTAAAACAAACAAACAAGAAAATCCCTCTTCTCTATGCTGTTT  545

seq1  ATTTTTAGAGTTTGTATTTTTCATGCAATTTACTTTTTTCCTTCCAAAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGAGTTTGTATTTTTCATGCAATTTACTTTTTTCCTTCCAAAGA  595

seq1  AAAACAATAACCATACTGGTGATGACTTCGGGAACCACGACTAACAAAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATAACCATACTGGTGATGACTTCGGGAACCACGACTAACAAAAT  645

seq1  TTTCAGCATCTGGAAAATTCCTTTCTACAATTAATTCTTAAGAGATATCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCATCTGGAAAATTCCTTTCTACAATTAATTCTTAAGAGATATCT  695

seq1  GCATGAAGAATGCATAACCGTAAACATTACAGAGAAGAACAAGGCCTGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAGAATGCATAACCGTAAACATTACAGAGAAGAACAAGGCCTGTT  745

seq1  TCATTAAATCTAAGACTTTTGGTTAAGACCATGTTTCACATAATGAAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAATCTAAGACTTTTGGTTAAGACCATGTTTCACATAATGAAAAT  795

seq1  ACATTCTTGGTTTCCAAAAGCCCATCATGCACCTCTGTGTTGCTTTTCAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTGGTTTCCAAAAGCCCATCATGCACCTCTGTGTTGCTTTTCAT  845

seq1  TTTTAGTATTTAATGCAGTGTTAAATGCAGTATTGGGGCTGACAGAATGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTATTTAATGCAGTGTTAAATGCAGTATTGGGGCTGACAGAATGA  895

seq1  AGAGTAAAATGTCATCCATCCACAATGCCTCTTCATAATAAAATATCACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAATGTCATCCATCCACAATGCCTCTTCATAATAAAATATCACA  945

seq1  TTTAGTTAAGATGTTATAATTGGTTTATTTAAATATTTTTTTCTGTACAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAAGATGTTATAATTGGTTTATTTAAATATTTTTTTCTGTACAC  995

seq1  TTCTTGGGTTTATAAGTCAAACTTAACATGATATTCTTTACCTGCTTCAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGTTTATAAGTCAAACTTAACATGATATTCTTTACCTGCTTCAT  1045

seq1  GAAGCAAAATCTCCATTTTGCCTGCTTTTCTCTTATGAACATCTACCCCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAATCTCCATTTTGCCTGCTTTTCTCTTATGAACATCTACCCCT  1095

seq1  TTCCTTCTAAAACTACTCTTATCTTTTTGTTGTTCTTTCTACTTAATAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTAAAACTACTCTTATCTTTTTGTTGTTCTTTCTACTTAATAAT  1145

seq1  GGTCAGACTTTGGAATTC  1162
      ||||||||||||||||||
seq2  GGTCAGACTTTGGAATTC  1163