BAC Information

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BAC

Clone NameB6Ng01-247J22
Chromosome3 (Build37)
Map Location 95,135,345 - 95,255,041
singlet/doubletdoublet
Overlap geneSetdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt
Upstream geneThem4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2
Downstream geneCtsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247J22.bB6Ng01-247J22.g
ACCGA055907GA055908
length1,1291,084
definitionB6Ng01-247J22.b B6Ng01-247J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,253,896 - 95,255,041)(95,135,345 - 95,136,413)
sequence
gaattccagaccaacatggctacacagcaggactgtctgaaactaggtgt
ggtggtcacatgtttttgtttccaagcacttgggaagtggaaccaggaag
aacgcaggccagctgagtctacaagaaagctatgtcaaaataataaaatc
aaattaaacagactttgttaaaaaacaaaaaaagcaaacactatttgaaa
tgtgtttttaatactgaagagagcatcttttatgatttttaaaatgattt
tattttatgatgtgtctgtatagggatatatgcccatgtgaatacaggta
cccagaaaaggggtggcagaaccccaaaactagatcacagatgtgagtca
ctgacatgggttctaggacctgaattcagattctctggaagagtagcgtg
cactctttgggctggagaaaagtcagagattgagagtgttgactgcttta
agtgttctgcttgcaaatatgtcagcaggccagaagagggcaccatatca
cattacaaatggctgggagccaccatgtggttgctgctcattcattcatt
tttaagtttaatatttttgtgtgctttagtagtgtgtgcatataggtacc
acactcatgtagaggtcagagggcaatttggtagagttagttttctcctt
ctacttgtgtgtgggttctgggaatcaattaaaggtaactaactaggctt
ttaacaagctacctcacaggccctaaagcagctgttctcaacctgtgagt
cacaacgacccctttggaagttgcatatctgatatcctacattacagtta
ttaacagtagcaagattacagttattaagtagaactaaaataattttatg
aagccgggcgtggtggcacacacctttaatcccggcacttgggaggcaga
ggcaggcggatttctgagctcgagaccagcctggtctacaaatgagttcc
aggatagccaggactatacatagaaaccctgtctcgaaaaccaaaaaata
aaataaaaatatataactttatggtgtagtcaccacacatgaagactata
ttaaggtcacaaggattaagaaagtggagaccactgcctaagcaaacttc
tttaaaactttctcatcttaccggtccaa
gaattccaacaccctgaggtagacacagaagaatgaagaattcaaagtta
ccactggctatacagtgagatggaagctggtttagcaatggaggccatgt
ccaacaaacaaaacaaactcccaggggaaaaggcctacttttcaagtacc
cagggacaggttgaagactggagactgaaactgagagatcaaggttaaag
ccagccaaacaaaagcagtggagggtgccaagaacacatctcctgcacaa
aaccaccagaggtaggctaaaaaaaaaaaaaaaaaaaaaaaaaaaacagc
gtgaaatggatctaggaagtaatggatataaacacacttcaaacaacttt
agagggagagaagtaggctagagagtacagtgttttccaagtcaaaggtt
agaatgaaatcaatgtgtattggggaactaatagttttaaatatgagtga
catatatttatacttattcagaaatatttttgctagatatatatttctgc
aggcttgtaattctagcacttgggagaccaagctaggtagatagcaagtt
tcaacgacagccctagactaaagatggagaacttgtctaaaaaaagaact
gaagtctttttctgttttttttttttaattaattatttttttttatatga
gtacactgtagttgtcttcagacacaccagaagagtgcatcggattctac
tacagatggttgtgagccacaatgtgattgctgggaattgaactcaggac
ctttggaagagttgtcagtgctcttaacctctgagccatctctccagccc
ccctttttatttttttaaagagagaaggtaaagtctgttttctttgtagt
gtaggactgggattatgtagtttaaattggtagtcatttttttttaaagt
ttagcaaaaattattttatttattttcatgtatggtgggcattctgtccg
ctatcttcacaccacccagagaggtcatcggatccccaatacagatgggt
tgtgagtcaccagtggtttgctgggaatggactcagaaccctcaagagga
tgcttcttactgcctgagcccatctctcagcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95253896_95255041
seq2: B6Ng01-247J22.b_51_1179 (reverse)

seq1  TTGGACGGTAAAGATTGAGAAAAGTTTTTAAAAGAAGTTTGCTTTAGGGC  50
      |||||| |  |||| |||| ||||||||  ||||||||||||||   |||
seq2  TTGGACCGGTAAGA-TGAG-AAAGTTTT--AAAGAAGTTTGCTT--AGGC  44

seq1  AGTGGTTCTCAACTTTCTTAATCC-TGTGACCTTTTAATATAGTTCCTCA  99
      ||||| |||| ||||||||||||| |||||||  ||||||||| || |||
seq2  AGTGG-TCTCCACTTTCTTAATCCTTGTGACC--TTAATATAG-TCTTCA  90

seq1  TGTTGTGGTGACTACAACCATAAAGTTATTATTATTTTTATTTTTATTTT  149
      || |||||||||||| |||||||||||||   |||||||| |||||||||
seq2  TG-TGTGGTGACTAC-ACCATAAAGTTAT--ATATTTTTA-TTTTATTTT  135

seq1  TTTGGTTTTTCGAGACAGGGTTTCTATGTATAGTCCTGGCTATCCTGGAA  199
      ||  | ||||||||||||||||||||||||||||||||||||||||||||
seq2  TT--GGTTTTCGAGACAGGGTTTCTATGTATAGTCCTGGCTATCCTGGAA  183

seq1  CTCATTTTGTAGACCAGGCTGGTCTCGAGCTCAGAAATCCGCCTGCCTCT  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCA-TTTGTAGACCAGGCTGGTCTCGAGCTCAGAAATCCGCCTGCCTCT  232

seq1  GCCTCCCAAGTGCCGGGATTAAAGGTGTGTGCCACCACGCCCGGCTTCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAAGTGCCGGGATTAAAGGTGTGTGCCACCACGCCCGGCTTCAT  282

seq1  AAAATTATTTTAGTTCTACTTAATAACTGTAATCTTGCTACTGTTAATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTTAGTTCTACTTAATAACTGTAATCTTGCTACTGTTAATAA  332

seq1  CTGTAATGTAGGATATCAGATATGCAACTTCCAAAGGGGTCGTTGTGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATGTAGGATATCAGATATGCAACTTCCAAAGGGGTCGTTGTGACT  382

seq1  CACAGGTTGAGAACAGCTGCTTTAGGGCCTGTGAGGTAGCTTGTTAAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTGAGAACAGCTGCTTTAGGGCCTGTGAGGTAGCTTGTTAAAAG  432

seq1  CCTAGTTAGTTACCTTTAATTGATTCCCAGAACCCACACACAAGTAGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTAGTTACCTTTAATTGATTCCCAGAACCCACACACAAGTAGAAG  482

seq1  GAGAAAACTAACTCTACCAAATTGCCCTCTGACCTCTACATGAGTGTGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACTAACTCTACCAAATTGCCCTCTGACCTCTACATGAGTGTGGT  532

seq1  ACCTATATGCACACACTACTAAAGCACACAAAAATATTAAACTTAAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATATGCACACACTACTAAAGCACACAAAAATATTAAACTTAAAAAT  582

seq1  GAATGAATGAGCAGCAACCACATGGTGGCTCCCAGCCATTTGTAATGTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATGAGCAGCAACCACATGGTGGCTCCCAGCCATTTGTAATGTGA  632

seq1  TATGGTGCCCTCTTCTGGCCTGCTGACATATTTGCAAGCAGAACACTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGCCCTCTTCTGGCCTGCTGACATATTTGCAAGCAGAACACTTAA  682

seq1  AGCAGTCAACACTCTCAATCTCTGACTTTTCTCCAGCCCAAAGAGTGCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAACACTCTCAATCTCTGACTTTTCTCCAGCCCAAAGAGTGCAC  732

seq1  GCTACTCTTCCAGAGAATCTGAATTCAGGTCCTAGAACCCATGTCAGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCTTCCAGAGAATCTGAATTCAGGTCCTAGAACCCATGTCAGTGA  782

seq1  CTCACATCTGTGATCTAGTTTTGGGGTTCTGCCACCCCTTTTCTGGGTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATCTGTGATCTAGTTTTGGGGTTCTGCCACCCCTTTTCTGGGTAC  832

seq1  CTGTATTCACATGGGCATATATCCCTATACAGACACATCATAAAATAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTCACATGGGCATATATCCCTATACAGACACATCATAAAATAAAA  882

seq1  TCATTTTAAAAATCATAAAAGATGCTCTCTTCAGTATTAAAAACACATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAAAAATCATAAAAGATGCTCTCTTCAGTATTAAAAACACATTT  932

seq1  CAAATAGTGTTTGCTTTTTTTGTTTTTTAACAAAGTCTGTTTAATTTGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTGTTTGCTTTTTTTGTTTTTTAACAAAGTCTGTTTAATTTGAT  982

seq1  TTTATTATTTTGACATAGCTTTCTTGTAGACTCAGCTGGCCTGCGTTCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTTTGACATAGCTTTCTTGTAGACTCAGCTGGCCTGCGTTCTT  1032

seq1  CCTGGTTCCACTTCCCAAGTGCTTGGAAACAAAAACATGTGACCACCACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTCCACTTCCCAAGTGCTTGGAAACAAAAACATGTGACCACCACA  1082

seq1  CCTAGTTTCAGACAGTCCTGCTGTGTAGCCATGTTGGTCTGGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTTCAGACAGTCCTGCTGTGTAGCCATGTTGGTCTGGAATTC  1129

seq1: chr3_95135345_95136413
seq2: B6Ng01-247J22.g_66_1149

seq1  GAATTCCAACA-CTTGAGGTAGACACAGAAGAATGAAGAATTCAAAGTTA  49
      ||||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACACCCTGAGGTAGACACAGAAGAATGAAGAATTCAAAGTTA  50

seq1  CCACTGGCTATACAGTGAGATGGAAGCTGGTTTAGCAATGGAGGCCATGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGCTATACAGTGAGATGGAAGCTGGTTTAGCAATGGAGGCCATGT  100

seq1  CCAACAAACAAAACAAACTCCCAGGGGAAAAGGCCTACTTTTCAAGTACC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAACAAAACAAACTCCCAGGGGAAAAGGCCTACTTTTCAAGTACC  150

seq1  CAGGGACAGGTTGAAGACTGGAGACTGAAACTGAGAGATCAAGGTTAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAGGTTGAAGACTGGAGACTGAAACTGAGAGATCAAGGTTAAAG  200

seq1  CCAGCCAAACAAAAGCAGTGGAGGGTGCCAAGAACACATCTCCTGCACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAAACAAAAGCAGTGGAGGGTGCCAAGAACACATCTCCTGCACAA  250

seq1  AACCACCAGAGGTAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAACACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACCACCAGAGGTAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAA-ACAG  299

seq1  CGTGAAATGGATCTAGGAAGTAATGGATATAAACACACTTCAAACAACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAATGGATCTAGGAAGTAATGGATATAAACACACTTCAAACAACTT  349

seq1  TAGAGGGAGAGAAGTAGGCTAGAGAGTACAGTGTTTTCCAAGTCAAAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGAGAGAAGTAGGCTAGAGAGTACAGTGTTTTCCAAGTCAAAGGT  399

seq1  TAGAATGAAATCAATGTGTATTGGGGAACTAATAGTTTTAAATATGAGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAAATCAATGTGTATTGGGGAACTAATAGTTTTAAATATGAGTG  449

seq1  ACATATATTTATACTTATTCAGAAATATTTTTGCTAGATATATATTTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATTTATACTTATTCAGAAATATTTTTGCTAGATATATATTTCTG  499

seq1  CAGGCTTGTAATTCTAGCACTTGGGAGACCAAGCTAGGTAGATAGCAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGTAATTCTAGCACTTGGGAGACCAAGCTAGGTAGATAGCAAGT  549

seq1  TTCAACGACAGCCCTAGACTAAAGATGGAGAACTTGTCTAAAAAAAGAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACGACAGCCCTAGACTAAAGATGGAGAACTTGTCTAAAAAAAGAAC  599

seq1  TGAAGTCTTTTTCTGTTTTTTTTTTTTAATTAATTATTTTTTTTTATATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTTTTTCTGTTTTTTTTTTTTAATTAATTATTTTTTTTTATATG  649

seq1  AGTACACTGTAGTTGTCTTCAGACACACCAGAAGAGTGCATCGGATTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTGTAGTTGTCTTCAGACACACCAGAAGAGTGCATCGGATTCTA  699

seq1  CTACAGATGGTTGTGAGCCACAATGTGATTGCTGGGAATTGAACTCAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATGGTTGTGAGCCACAATGTGATTGCTGGGAATTGAACTCAGGA  749

seq1  CCTTTGGAAGAGTTGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGAAGAGTTGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCC  799

seq1  CCCCTTTT--ATTTTTTAAAGAGAGAAGGTAAAGTCTGTTT--CTTGTAG  845
      ||||||||   ||||||||||||||||||||||||||||||   ||||||
seq2  CCCCTTTTTATTTTTTTAAAGAGAGAAGGTAAAGTCTGTTTTCTTTGTAG  849

seq1  TGTAGGACTGG--ATATGTAGTT--AAATGGTAGTCA-TTTTTTTTAAAG  890
      |||||||||||   |||||||||  || ||||||||| ||||||||||||
seq2  TGTAGGACTGGGATTATGTAGTTTAAATTGGTAGTCATTTTTTTTTAAAG  899

seq1  TTTAGCAAAAATTATTTTATTTA-TTTCATGTAT-GTGGGCATTCTGT-C  937
      ||||||||||||||||||||||| |||||||||| ||||||||||||| |
seq2  TTTAGCAAAAATTATTTTATTTATTTTCATGTATGGTGGGCATTCTGTCC  949

seq1  GCTATCTTCACA-CACCAGAAGAGGTCATCGGATCCCCAATACAGAT-GG  985
      |||||||||||| ||||   ||||||||||||||||||||||||||| ||
seq2  GCTATCTTCACACCACCCAGAGAGGTCATCGGATCCCCAATACAGATGGG  999

seq1  TTGTGAGTCACCAGGTGGTTGCTGGGAATTGAACTCAGGA-CCTCAAGAA  1034
      ||||||||||||||  | |||||||||| || |||||| | |||||||| 
seq2  TTGTGAGTCACCAGTGGTTTGCTGGGAA-TGGACTCAGAACCCTCAAGAG  1048

seq1  GATGCTCTTAACTG-CTGAG-CCATCTCTCCAGCCCC  1069
      ||||||  | |||| ||||| |||||||| |||||||
seq2  GATGCTTCTTACTGCCTGAGCCCATCTCT-CAGCCCC  1084