This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
B6Ng01-247K07
Chromosome
3 (Build37)
Map Location
61,669,801 - 61,790,976
singlet/doublet
doublet
Overlap gene
LOC669910
Upstream gene
EG666853
,
P2ry1
,
Rap2b
,
LOC666891
Downstream gene
LOC676965
,
4631416L12Rik
,
Dhx36
,
Gpr149
,
LOC676984
Link
Open Mouse BAC browser
Click to get alignment info.
name
EG666853
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666853
MGI:3644852
definition
note
: predicted gene, EG666853
pseudo
: _no_value
name
P2ry1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18441
MGI:105049
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Rap2b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:74012
MGI:1921262
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC666891
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666891
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 124 mRNAs, 3270 ESTs, 24 Proteins
pseudo
: _no_value
name
LOC669910
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:669910
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
LOC676965
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:676965
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
4631416L12Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:622434
MGI:1918053
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dhx36
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:72162
MGI:1919412
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gpr149
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:229357
MGI:2443628
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC676984
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:676984
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 93 ESTs, 6 Proteins
pseudo
: _no_value
name
P2ry1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142367056
GeneID:18441
MGI:105049
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: purinergic receptor P2Y, G-protein coupled 1
transcript_id
: NM_008772.3
name
Rap2b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:113866002
GeneID:74012
MGI:1921262
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RAP2B, member of RAS oncogene family
transcript_id
: NM_028712.4
name
4631416L12Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124486828
GeneID:622434
MGI:1918053
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 4631416L12 gene
transcript_id
: NM_001081295.1
name
Dhx36
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:30794389
GeneID:72162
MGI:1919412
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: DEAH (Asp-Glu-Ala-His) box polypeptide 36
transcript_id
: NM_028136.1
name
Gpr149
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802371
GeneID:229357
MGI:2443628
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: G protein-coupled receptor 149
transcript_id
: NM_177346.3
name
P2ry1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6679193
CCDS:CCDS17377.1
GeneID:18441
MGI:105049
definition
GO_component
: GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0016494 - C-X-C chemokine receptor activity [Evidence IEA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: P2Y1 receptor
product
: purinergic receptor P2Y, G-protein coupled 1
protein_id
: NP_032798.1
name
Rap2b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:13386338
CCDS:CCDS17378.1
GeneID:74012
MGI:1921262
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO_process
: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]
codon_start
: 1
product
: RAP2B, member of RAS oncogene family
protein_id
: NP_082988.1
name
4631416L12Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124486829
GeneID:622434
MGI:1918053
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA]
GO_process
: GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA]
codon_start
: 1
note
: Src homology 3 domain-containing guanine nucleotide exchange factor
product
: hypothetical protein LOC622434
protein_id
: NP_001074764.1
name
Dhx36
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:30794390
CCDS:CCDS17379.1
GeneID:72162
MGI:1919412
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: DEAH (Asp-Glu-Ala-His) box polypeptide 36
protein_id
: NP_082412.1
name
Gpr149
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:84000005
CCDS:CCDS17380.1
GeneID:229357
MGI:2443628
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: G protein-coupled receptor PGR10
product
: G protein-coupled receptor 149
protein_id
: NP_796320.2
name
LOC669910
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:669910
definition
number
: 1
pseudo
: _no_value
name
LOC669910
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:669910
definition
number
: 2
pseudo
: _no_value
name
LOC669910
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:669910
definition
number
: 3
pseudo
: _no_value
name
LOC676965
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:676965
definition
number
: 4
pseudo
: _no_value
name
LOC676965
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:676965
definition
number
: 3
pseudo
: _no_value
name
LOC676965
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:676965
definition
number
: 2
pseudo
: _no_value
name
LOC676965
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:676965
definition
number
: 1
pseudo
: _no_value
name
LOC666891
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149251188
GeneID:666891
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 124 mRNAs, 3270 ESTs, 24 Proteins
product
: similar to LOC654472 protein
pseudo
: _no_value
transcript_id
: XR_032037.1
name
LOC676984
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149251189
GeneID:676984
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 93 ESTs, 6 Proteins
product
: similar to ribosomal protein S23
pseudo
: _no_value
transcript_id
: XR_032066.1
clone name
MSMg01-508M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436C04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352O16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082A11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-371A06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-429M07
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-346O24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-145E10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-145E12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-209D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-329L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141P22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-429A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-509N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-159J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-390A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-417E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-295O12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-479K22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-115J16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442L21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-293B11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-298J06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372I14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141C13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-112P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-120J04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-149E06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-096K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-412L17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394O19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-157F01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-133F08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-162H13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484M19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452L06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-420I06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-093B15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-055M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-155F05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-459B09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-383I07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-301J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-178E19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-371B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-178D19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-145I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-271E03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-078E21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-499I23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-533P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-319L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-403F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-510M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378I07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-114F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-160E20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-160E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-051P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-352M14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-536J04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-471D23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-307F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-390G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-483E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-088N18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-434N20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-307P04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-171G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-183H16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-474K16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389D12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-381A07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-503P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-426P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316B23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-166K17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-084F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-421D10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-518P10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-400D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-451H01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-124F10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-470B08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-337N05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384M11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-128P07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-309B12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-107D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-192F15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-143O10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-132D16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-329J22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-204L01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-156A22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-004O14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-098I23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-042K11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-136L16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-308L05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-147E03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-151K19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-054P18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-316N10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-121F11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-191K18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-018A01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-326J06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-295M07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-059O21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-157G06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259E19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-067N19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-139L21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-138O18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-019K18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-320B10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-133E13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-031C10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-150I09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-348H06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-176N19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-228C19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-090N11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-008F01
singlet/doublet
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