BAC Information

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BAC

Clone NameB6Ng01-248B04
Chromosome3 (Build37)
Map Location 116,924,332 - 117,030,602
singlet/doubletdoublet
Overlap geneD3Bwg0562e
Upstream geneGpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908
Downstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248B04.bB6Ng01-248B04.g
ACCGA056241GA056242
length1,0221,153
definitionB6Ng01-248B04.b B6Ng01-248B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,924,332 - 116,925,353)(117,029,428 - 117,030,602)
sequence
gaattctaattgcttgtggctctccatagtggtctctgtgtcacagagat
gttcccttgccgaggggtagccaccatacttacctgtgggtgtctgttta
gatggttgagagggattatgctggttcaggaaattggtgcttgtagatcc
tcctctcagattcatgactccactaacactgaatacctaacgaagtttcc
agtgccaggcatggtttccttcttgttgggtgatcttaagtccaacaaga
gagttgttggctaccacaaaggcatgacatgcacattactgaaccctgtg
ttactgtgccatgatggttgctgatgtggttcataggcatctcccagcac
ttaatccttaaaacacaaaactacaatacttctaacatttgaatgcaaat
agaccattaattaaggaatcttcaaggagaattttgttatgaattataag
atatatcttattttactcttctttatgcaggggttgcattgaaagcatat
gtattatcttatatatcctgatgataacccgatgaaatcgctcttactgc
cccttctttatgtgataaatgcaattctactctgccatgaagaattttta
acttttatgtgttttccttaaattctgtatcccttcctgttactctgatt
ttccacaggaaggaatctaattcctttttttgtgaatggatgaaccctca
gttattactgttttggtaccaccttgggcagagaccccatgcagcagctt
tgcacaggggccagcacttcatgactcacacccatgataacacaaaggtg
gggtagagaaaggatttagaaaaggagagtggggatcatggcagatagca
ctgcaggaacagagccttaggaactggattcaaagattcagccaaggatg
gccttctccatgctattacaccgtgaagctaaagagaccgtttatgctca
cttccattcagattttatttttattttatttaattttttttttttgtgag
acaaggttttctctgtatagcc
gaattcttttcaatcaacaaagtaaaataaacttaaagacaagaataagt
tcctgagaaactcagaaataagtagagagatggaggacactaaacaagta
ttatgaaaattgtgtttgttatttaatgacttctcacagacgcaaagtcc
atggaccaatcagtaattgtgtatctacattagagaacctgtattcttcc
ttatttcttctacatttgtgttgaattgcaaccatcaaataattagaaaa
gcaataatatccatcactctttttccatgtttttctcccattgaaagaaa
tttctgattctttttctgtgtatccttttctctgtgtgctcccatgatta
gtgatgtaaatgagccttgctccctaaggtgtttaatttaagaaacttat
ctgttgttttagaggtaatattcacatttcagtgggctaagcagagaatc
aatttgttaaaactggacttttcttatacaattttagaacataaaaattc
attaagacctactggtataggaaaataactttatcatttaatgtaatgaa
actatcttggagcacaaaaaaaatggttaaaacatcacgcccaacatgtt
atgaactttcacggtgaactgctgtagttgtaacctgagagtagttaacg
tcttccaactcattacagacttcatcttgcgtgttcctttgcccacctga
tatgtatttcctacttcctttcactttaatttttactgaaaagtgtgtca
ctgctaatctttaatgctaatggtgaccaagaaaactgctgagggtagta
aatcactctggttctctcagtaaaccagatatgaattaaaggctctgtgg
ctttgagttgaacatcttgccgagaagtcttgaggtgattgctggcagca
cactcaaactaagatgcataacttggctctcttcctttggcagaaagtca
ttcccatcccaacatgcgaccctcgctgcttgccgctgtgtatgtgtccg
taagtattaggtttctattgttaattgtgacttaggaagctgagagtaat
gtttcttcagtgactgatacattagtctgcctccttaatacaaatagcat
ctaaagcagtatcgatgctactgaaaaagtaagtagaatccaagaatttt
ttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116924332_116925353
seq2: B6Ng01-248B04.b_45_1066

seq1  GAATTCTAATTGCTTGTGGCTCTCCATAGTGGTCTCTGTGTCACAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTGCTTGTGGCTCTCCATAGTGGTCTCTGTGTCACAGAGAT  50

seq1  GTTCCCTTGCCGAGGGGTAGCCACCATACTTACCTGTGGGTGTCTGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTGCCGAGGGGTAGCCACCATACTTACCTGTGGGTGTCTGTTTA  100

seq1  GATGGTTGAGAGGGATTATGCTGGTTCAGGAAATTGGTGCTTGTAGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGAGAGGGATTATGCTGGTTCAGGAAATTGGTGCTTGTAGATCC  150

seq1  TCCTCTCAGATTCATGACTCCACTAACACTGAATACCTAACGAAGTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCAGATTCATGACTCCACTAACACTGAATACCTAACGAAGTTTCC  200

seq1  AGTGCCAGGCATGGTTTCCTTCTTGTTGGGTGATCTTAAGTCCAACAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGGCATGGTTTCCTTCTTGTTGGGTGATCTTAAGTCCAACAAGA  250

seq1  GAGTTGTTGGCTACCACAAAGGCATGACATGCACATTACTGAACCCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTTGGCTACCACAAAGGCATGACATGCACATTACTGAACCCTGTG  300

seq1  TTACTGTGCCATGATGGTTGCTGATGTGGTTCATAGGCATCTCCCAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGCCATGATGGTTGCTGATGTGGTTCATAGGCATCTCCCAGCAC  350

seq1  TTAATCCTTAAAACACAAAACTACAATACTTCTAACATTTGAATGCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCTTAAAACACAAAACTACAATACTTCTAACATTTGAATGCAAAT  400

seq1  AGACCATTAATTAAGGAATCTTCAAGGAGAATTTTGTTATGAATTATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATTAATTAAGGAATCTTCAAGGAGAATTTTGTTATGAATTATAAG  450

seq1  ATATATCTTATTTTACTCTTCTTTATGCAGGGGTTGCATTGAAAGCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTTATTTTACTCTTCTTTATGCAGGGGTTGCATTGAAAGCATAT  500

seq1  GTATTATCTTATATATCCTGATGATAACCCGATGAAATCGCTCTTACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATCTTATATATCCTGATGATAACCCGATGAAATCGCTCTTACTGC  550

seq1  CCCTTCTTTATGTGATAAATGCAATTCTACTCTGCCATGAAGAATTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTTATGTGATAAATGCAATTCTACTCTGCCATGAAGAATTTTTA  600

seq1  ACTTTTATGTGTTTTCCTTAAATTCTGTATCCCTTCCTGTTACTCTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATGTGTTTTCCTTAAATTCTGTATCCCTTCCTGTTACTCTGATT  650

seq1  TTCCACAGGAAGGAATCTAATTCCTTTTTTTGTGAATGGATGAACCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGGAAGGAATCTAATTCCTTTTTTTGTGAATGGATGAACCCTCA  700

seq1  GTTATTACTGTTTTGGTACCACCTTGGGCAGAGACCCCATGCAGCAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTACTGTTTTGGTACCACCTTGGGCAGAGACCCCATGCAGCAGCTT  750

seq1  TGCACAGGGGCCAGCACTTCATGACTCACACCCATGATAACACAAAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGGGCCAGCACTTCATGACTCACACCCATGATAACACAAAGGTG  800

seq1  GGGTAGAGAAAGGATTTAGAAAAGGAGAGTGGGGATCATGGCAGATAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAGAAAGGATTTAGAAAAGGAGAGTGGGGATCATGGCAGATAGCA  850

seq1  CTGCAGGAACAGAGCCTTAGGAACTGGATTCAAAGATTCAGCCAAGGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGAACAGAGCCTTAGGAACTGGATTCAAAGATTCAGCCAAGGATG  900

seq1  GCCTTCTCCATGCTATTACACCGTGAAGCTAAAGAGACCGTTTATGCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCTTCTCCATGCTATTACACCGTGAAGCTAAAGAGACCGTTTATGCTC-  949

seq1  ACTTCCATTCAGATTTTTATTTTTATTTTATTTTA-TTTTTTTTTTTGTG  999
      ||||||||||||| ||||||||||||||||||| | ||||||||||||||
seq2  ACTTCCATTCAGA-TTTTATTTTTATTTTATTTAATTTTTTTTTTTTGTG  998

seq1  AGAC-AGGGTTTCTCTGTATAGCC  1022
      |||| ||| |||||||||||||||
seq2  AGACAAGGTTTTCTCTGTATAGCC  1022

seq1: chr3_117029428_117030602
seq2: B6Ng01-248B04.g_64_1216 (reverse)

seq1  GAAAAAATTCTTTGATTTTTATTTATTTTTTTCTAAGTAGCATCTGATAA  50
      |||||||||||| || || || ||| ||||   | ||||||||| ||| |
seq2  GAAAAAATTCTTGGA-TTCTACTTACTTTT---TCAGTAGCATC-GAT-A  44

seq1  CTGCTTTAGATGCTATTTGTATTAAAGGGAGGCAGAACTAAATTGTAATC  100
      |||||||||||||||||||||||||  |||||||| |||||  ||| |||
seq2  CTGCTTTAGATGCTATTTGTATTAA--GGAGGCAG-ACTAA--TGT-ATC  88

seq1  AGTCACCTGAAGGAAACATTAACTTCTCAGCTTTCCTAAAGGTCACAATT  150
      ||||| ||||| |||||||||   ||||||| |||||||  ||||||| |
seq2  AGTCA-CTGAA-GAAACATTA--CTCTCAGC-TTCCTAA--GTCACAA-T  130

seq1  TAACAATAAGAAACCTAATACTTACGGACACATACACAGCGGCAAAGGCA  200
      ||||||| |||||||||||||||||||||||||||||||||||||  |||
seq2  TAACAAT-AGAAACCTAATACTTACGGACACATACACAGCGGCAA--GCA  177

seq1  GCGAGGGTCGCATGTTGGGATGGGAATGACTTTCTGCCAAAGGAAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGGTCGCATGTTGGGATGGGAATGACTTTCTGCCAAAGGAAGAGAG  227

seq1  CCAAGTTATGCATCTTAGTTTGAGTGTGCTGCCAGCAATCACCTCAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTATGCATCTTAGTTTGAGTGTGCTGCCAGCAATCACCTCAAGAC  277

seq1  TTCTCGGCAAGATGTTCAACTCAAAGCCACAGAGCC-TTAATTCATATCT  349
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCTCGGCAAGATGTTCAACTCAAAGCCACAGAGCCTTTAATTCATATCT  327

seq1  GGTTTACTGAGAGAACCAGAGTGATTTACTACCCTCAGCAGTTTTCTTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACTGAGAGAACCAGAGTGATTTACTACCCTCAGCAGTTTTCTTGG  377

seq1  TCACCATTAGCATTAAAGATTAGCAGTGACACACTTTTCAGTAAAAATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATTAGCATTAAAGATTAGCAGTGACACACTTTTCAGTAAAAATTA  427

seq1  AAGTGAAAGGAAGTAGGAAATACATATCAGGTGGGCAAAGGAACACGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAGGAAGTAGGAAATACATATCAGGTGGGCAAAGGAACACGCAA  477

seq1  GATGAAGTCTGTAATGAGTTGGAAGACGTTAACTACTCTCAGGTTACAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTCTGTAATGAGTTGGAAGACGTTAACTACTCTCAGGTTACAAC  527

seq1  TACAGCAGTTCACCGTGAAAGTTCATAACATGTTGGGCGTGATGTTTTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGTTCACCGTGAAAGTTCATAACATGTTGGGCGTGATGTTTTAA  577

seq1  CCATTTTTTTTGTGCTCCAAGATAGTTTCATTACATTAAATGATAAAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTTTTGTGCTCCAAGATAGTTTCATTACATTAAATGATAAAGTT  627

seq1  ATTTTCCTATACCAGTAGGTCTTAATGAATTTTTATGTTCTAAAATTGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTATACCAGTAGGTCTTAATGAATTTTTATGTTCTAAAATTGTA  677

seq1  TAAGAAAAGTCCAGTTTTAACAAATTGATTCTCTGCTTAGCCCACTGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAGTCCAGTTTTAACAAATTGATTCTCTGCTTAGCCCACTGAAA  727

seq1  TGTGAATATTACCTCTAAAACAACAGATAAGTTTCTTAAATTAAACACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATATTACCTCTAAAACAACAGATAAGTTTCTTAAATTAAACACCT  777

seq1  TAGGGAGCAAGGCTCATTTACATCACTAATCATGGGAGCACACAGAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGCAAGGCTCATTTACATCACTAATCATGGGAGCACACAGAGAAA  827

seq1  AGGATACACAGAAAAAGAATCAGAAATTTCTTTCAATGGGAGAAAAACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACACAGAAAAAGAATCAGAAATTTCTTTCAATGGGAGAAAAACAT  877

seq1  GGAAAAAGAGTGATGGATATTATTGCTTTTCTAATTATTTGATGGTTGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAGTGATGGATATTATTGCTTTTCTAATTATTTGATGGTTGCA  927

seq1  ATTCAACACAAATGTAGAAGAAATAAGGAAGAATACAGGTTCTCTAATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACACAAATGTAGAAGAAATAAGGAAGAATACAGGTTCTCTAATGT  977

seq1  AGATACACAATTACTGATTGGTCCATGGACTTTGCGTCTGTGAGAAGTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACAATTACTGATTGGTCCATGGACTTTGCGTCTGTGAGAAGTCA  1027

seq1  TTAAATAACAAACACAATTTTCATAATACTTGTTTAGTGTCCTCCATCTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAACAAACACAATTTTCATAATACTTGTTTAGTGTCCTCCATCTC  1077

seq1  TCTACTTATTTCTGAGTTTCTCAGGAACTTATTCTTGTCTTTAAGTTTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTATTTCTGAGTTTCTCAGGAACTTATTCTTGTCTTTAAGTTTAT  1127

seq1  TTTACTTTGTTGATTGAAAAGAATTC  1175
      ||||||||||||||||||||||||||
seq2  TTTACTTTGTTGATTGAAAAGAATTC  1153