BAC Information

Click to search

BAC

Clone NameB6Ng01-248D11
Chromosome3 (Build37)
Map Location 154,945,542 - 154,946,695
singlet/doubletsinglet
Overlap geneEG383956
Upstream geneLhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44
Downstream geneScp2-ps1, EG668902, LOC624519, LOC100040901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248D11.bB6Ng01-248D11.g
ACCGA056348GA056349
length1,2041,159
definitionB6Ng01-248D11.b B6Ng01-248D11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttgtgattgggttacctcactcaggatgatgccctccaggtc
catccatttggctaggaatttcataaattcattctttttaatagctgagt
agtactccattgtgtaaacgtaccacattttctgtatgaattcctctgtt
gagggacatctgggttctttccagcttctggctattataaataaggctgc
tatgaacatagtggagcatgtgtccttcttaccggttgggacatcttctg
gatatatgcccaggagaggtatagcatgatcctccagtagtactatgtcc
aattttctgaggaagcaccagactactttccagagaagttgtacaagctt
gcaatcccaccaacaatggaggagtgttcctctttctccacatcctcgcc
agcatctgctgtcacctgaaattttgatcttagccattctgactcgtgtg
aggtggaatcttagggttgttttgatttgcatttccctgatgattaagga
tgttgaacattttgtcaggtgcttctctgccattcgatattcctcaggtg
agaattctttgttcagctctgagtcccattttttaatggggttatttgat
tttctggagtccacattctttgagttctttatatatattagatattagtc
ccctatctgatttaagataggtaaagatccgttcccaatctgttggtggc
ctttttgtcttattgacggtgtcctttgccttgtagaagctttgcagttt
cttgaggtcccatttgtcaatcctcgatcttacagcacaagccattgctg
ttctattcaggaatttttcccctgtacccatatcttcgaggcttttccct
actttctcctgtataagtttcagtgtctctggttttatgtggaagtttcc
ttaatccacttagatttgaccttagtacagggagttaggaatggatcaat
tcgcattcttctacatgataacccgccagttgtaccagcaccaatttgct
gaaaaatgctttctttttttccaagtggaatgggttcagcctcccttgtt
caagaatcaattgacccataggttgtgtggggtttcatttctggtcttca
attctgttccattgatctacttgtctgtcactatacaagtacatgcagtt
ttatccagtgcctctgttagtacaggcttttatgttcaaggcaacatggg
ccag
gaattccaggaagttcaaggccagacttgcctataaagtgatttctgtgc
aagatgaggccacatagcaaaattctgtttcaacgaccatacaaacacga
gcaaaataaattacttttccagtttcgtaaatccagtgctataataaggg
ctctgttcatacttcacctaccctcacataaacatttatattgctgaaga
aaacaaaatatttacaattataaatatataatcatgaataaaaatttaaa
cattgacagacttcctttataagataatctacatatgcacagtttaatta
aataagactctggggctggctttatccagttcataggagaaataacgtac
tatgagaatgacagatttaattctcaccacctgaatatacctttgtttta
tccagtcgtaagagactgagctacatagagcctctcaacacacacacaca
cacacacacacacacacacacacacacacacacacacacacaaacgtgca
cgcatatgcgcacgcatgctcagacacatacacaggcacacacacatgca
tacacgtatgtgcctgacttatgaacatagcttactacaagcaaggcctt
tgcttatataaaattcatcaccaaagtcctgttcttccaaaataagtctc
atgttcttccataagtacctgtcaacatcttatgactgctagaggaagaa
ctataccaaatgtatccagcctgcagcagttctgtgtgggtcatgaagca
ggagaggtatttctccccatttgcaaattcgaaaaagggccaagtcttag
cacactgaaatagagtccccagtgtagacaacaatctgtttgaatggctc
caggatcataagaacaaaacatgtcctctccccaagcaacatacactgaa
aagatatgtgtgtaggaacaaggcattagatcagcacttgtttactttga
tctgaggcaaccaattgctgataggttctcctccttcttcaaaaagagca
accaatggataaatgaagtagaggtcacggatggagattaaacacataga
catgtcgaatgagagaagcttctcaattgcatcaggttgagggtgaatac
ctgacctaatgtggacagaatatccaaggactaccccgaatagtaaaagg
aaaacagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_154945542_154946695
seq2: B6Ng01-248D11.g_65_1223 (reverse)

seq1  TCCTGTTTTCCTTTTTTACTAATCTGGGGTGTAGTCCTTGGAATAATACT  50
      |||||||||||  |||||||| ||   || ||||||||||||   || ||
seq2  TCCTGTTTTCC--TTTTACTATTC---GGGGTAGTCCTTGGA--TATTCT  43

seq1  GTCCACATTTAAGGGTCA-GTATTCCACCTC-ACCTGATCCAATTGAGAA  98
      |||||||||    ||||| ||||||  |||| ||||||| ||||||||||
seq2  GTCCACATT---AGGTCAGGTATTCACCCTCAACCTGATGCAATTGAGAA  90

seq1  GC-TCTCTCA-TCGACATGTCTATGTGTTT-ATCT-CATCCGTGA-CTCT  143
      || ||||||| ||||||||||||||||||| |||| ||||||||| ||||
seq2  GCTTCTCTCATTCGACATGTCTATGTGTTTAATCTCCATCCGTGACCTCT  140

seq1  ACTTCATTTAT-CATTGGTTGCTCTTTT--GAGAAG--AGAGAACCTATC  188
      ||||||||||| ||||||||||||||||   |||||   |||||||||||
seq2  ACTTCATTTATCCATTGGTTGCTCTTTTTGAAGAAGGAGGAGAACCTATC  190

seq1  AGCAATTGGTTGCCTCAGATC-AAGTAAAC-AGTGCTGATCTAATGCCTT  236
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  AGCAATTGGTTGCCTCAGATCAAAGTAAACAAGTGCTGATCTAATGCCTT  240

seq1  G-TCCTACACACATATCTTTTCAGTGTATTGTTGCTTGGGGGAGAGGACA  285
      | |||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  GTTCCTACACACATATCTTTTCAGTGTA-TGTTGCTT-GGGGAGAGGACA  288

seq1  TGTTTTGTTCTTATGATCCTGGAGCCATTCAAACAGATTGTTGTCTACAC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTCTTATGATCCTGGAGCCATTCAAACAGATTGTTGTCTACAC  338

seq1  TGGGGACTCTATTTCAGTGTGCTAAGACTTGG-CCTTTTTCGAATTTGC-  383
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  TGGGGACTCTATTTCAGTGTGCTAAGACTTGGCCCTTTTTCGAATTTGCA  388

seq1  AATGGGGAGAAATACCTCTCCTGCTTCATGACCCACACAGAACTGCTGCA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGAGAAATACCTCTCCTGCTTCATGACCCACACAGAACTGCTGCA  438

seq1  GGCTGGATACATTTGGTATAGTTCTTCCTCTAGCAGTCATAAGATGTTGA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGATACATTTGGTATAGTTCTTCCTCTAGCAGTCATAAGATGTTGA  488

seq1  CAGGTACTTATGGAAGAACATGAGACTTATTTTGGAAGAACAGGACTTTG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACTTATGGAAGAACATGAGACTTATTTTGGAAGAACAGGACTTTG  538

seq1  GTGATGAATTTTATATAAGCAAAGGCCTTGCTTGTAGTAAGCTATGTTCA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAATTTTATATAAGCAAAGGCCTTGCTTGTAGTAAGCTATGTTCA  588

seq1  TAAGTCAGGCACATACGTGTATGCATGTGTGTGTGCCTGTGTATGTGTCT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAGGCACATACGTGTATGCATGTGTGTGTGCCTGTGTATGTGTCT  638

seq1  GAGCATGCGTGCGCATATGCGTGCACGTTTGTGTGTGTGTGTGTGTGTGT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGCGTGCGCATATGCGTGCACGTTTGTGTGTGTGTGTGTGTGTGT  688

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGAGAGGCTCTATGTA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGAGAGGCTCTATGTA  738

seq1  GCTCAGTCTCTTACGACTGGATAAAACAAAGGTATATTCAGGTGGTGAGA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTCTCTTACGACTGGATAAAACAAAGGTATATTCAGGTGGTGAGA  788

seq1  ATTAAATCTGTCATTCTCATAGTACGTTATTTCTCCTATGAACTGGATAA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCTGTCATTCTCATAGTACGTTATTTCTCCTATGAACTGGATAA  838

seq1  AGCCAGCCCCAGAGTCTTATTTAATTAAACTGTGCATATGTAGATTATCT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCCCCAGAGTCTTATTTAATTAAACTGTGCATATGTAGATTATCT  888

seq1  TATAAAGGAAGTCTGTCAATGTTTAAATTTTTATTCATGATTATATATTT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGAAGTCTGTCAATGTTTAAATTTTTATTCATGATTATATATTT  938

seq1  ATAATTGTAAATATTTTGTTTTCTTCAGCAATATAAATGTTTATGTGAGG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTAAATATTTTGTTTTCTTCAGCAATATAAATGTTTATGTGAGG  988

seq1  GTAGGTGAAGTATGAACAGAGCCCTTATTATAGCACTGGATTTACGAAAC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGAAGTATGAACAGAGCCCTTATTATAGCACTGGATTTACGAAAC  1038

seq1  TGGAAAAGTAATTTATTTTGCTCGTGTTTGTATGGTCGTTGAAACAGAAT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGTAATTTATTTTGCTCGTGTTTGTATGGTCGTTGAAACAGAAT  1088

seq1  TTTGCTATGTGGCCTCATCTTGCACAGAAATCACTTTATAGGCAAGTCTG  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATGTGGCCTCATCTTGCACAGAAATCACTTTATAGGCAAGTCTG  1138

seq1  GCCTTGAACTTCCTGGAATTC  1154
      |||||||||||||||||||||
seq2  GCCTTGAACTTCCTGGAATTC  1159