BAC Information

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BAC

Clone NameB6Ng01-248H22
Chromosome3 (Build37)
Map Location 82,836,847 - 82,977,163
singlet/doubletdoublet
Overlap geneFgb, Plrg1, EG627094
Upstream geneGucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga
Downstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248H22.bB6Ng01-248H22.g
ACCGA056558GA056559
length1,1201,117
definitionB6Ng01-248H22.b B6Ng01-248H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,976,025 - 82,977,163)(82,836,847 - 82,837,958)
sequence
gaattccaggacagtagggctatacagagaaaccctgtctctaaaaacaa
aaacaaaacaaagtaaacattgatgcattctcttaataatttaaattagt
aaacagaaaaggaaaactacttaacacaaaaaataggtaattgcagagaa
tcagagcaacactatttcaaactgaaatactttcatttagaacggtttct
ttgctgaaactctaaatagaacttcctgtttaaagaacaaaaacagcccc
atatttcctaaaaatggaattttcattatagaatcaagttacttgattca
taaactccctaggtaaaagccccaggcttccaaaggacaaactggaaaac
tggaaaagctgtcatagtagtagccctccaagcctcaattccgtgaatta
gcatgttggtttttacactcttaagtgttccacagcctccacattagaag
ctttgccttgtttcttctgaagttcaaaccatgatgcttgggggatcagg
tcaggcctgagtctatcaactcgattttgatataaactaccatttttttg
cccacattggattaaatcgggaaatttgcatttgaatagatgttaaagga
tcctctcattacatggaagggtctaactttactagaagtgtgtgcatggg
tataatgagaagttgaaagaaaaaaaatctgaaaaattagttttttaccc
cccaagagggtctcactgggaatacaaaccactcttaacagtaagtaggc
ccatgcccagcagtaaatgaccaacacagaacaaactcaacagcgttttt
ggaagttcttggtctcataatgttgtgttaggacatcttttgaaacttca
caagttttttgaaaatttattatggcttcaattatgtgttattagtgaat
tcctgtgcttctgcatctaataaggtttttttttttttttctgtgtcttt
gttttgtcctcttctgacctgtctggatttaacattatctattcatctat
cttcctagatgcctgttgttctagagaaagagaaaagattgtgctctgat
agaggagatggtaagaccgaaggaactgaagaaatttccacagtcaagtg
attgacacaaacaatactga
gaattctggctaggcaatgactacctccacttactcactctgaggggctc
agttctcagggttgaattagaggactgggctggaaaagaggcttatgcgg
agtaccacttccgggtaggctctgaggcagagggctacgcgctgcaggtc
tcctcctaccggggcactgctggagatgctctggtgcagggctctgtgga
ggaggggacagaatacacctcacacagcaacatgcagttcagtacctttg
acagagatgccgaccaatgggaagagaactgtgcagaggtctatggggga
ggctggtggtacaacagctgtcaggccgccaatctcaatggcatttacta
ccccgggggcacctacgatcccaggaacaacagcccctatgagatagaga
acggggtggtctgggttcccttcagaggagcagattattccctcagggcc
gttcggatgaaaatcagaccgctggtgggacaatagctgaagggttagaa
agtgggggctctgttttctttgctcggttatccgagaagaaagacaaaac
ggaagatgaaggtgtcacggatcttgtgaactttttaaaactttcaaggt
gctattccattgttctttgtactgtagctaaatgtaactgagatgagtta
ctgctttgaaaaaataaagttttacattttttccaccctttaaaaaaaaa
aaaccctatgagttttaaagcatttgcaagaagatgccaagggatattca
ttccatcgggaagagggagtccgactagagctcttcttaagggtggccgc
ttcttttctcagacccaccccacccccggtcaataagcccattgcaagta
cagaagctcatttacgcaaggagacagtgtgggctctaaagttgatgttc
gggacccagagtaactttgcttcagtgttcgctccaccttatgctttgaa
gacaggagtctcacagaacccaggagtggactttccagttttcttcgaga
acttggcctgccggggagtccatggtcctcttgaatgctggcatcccagg
cctgttcacttccctggaatgctgtgtgatgttgggagcctggaatcaag
ttctcttgattccacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82976025_82977163
seq2: B6Ng01-248H22.b_50_1169 (reverse)

seq1  TCAGTATTGTTTTGTGGTCAAATCACTGAACTGTGAAATTTTTCCTCCAG  50
      ||||||||| ||||| ||| |||||||  |||||| || |||  || |||
seq2  TCAGTATTG-TTTGT-GTC-AATCACTTGACTGTGGAAATTT--CTTCAG  45

seq1  CTCCTTCCGGTTCTTTCCCATCTCCCTTCCTATCCAGAGCCACATCTTTT  100
       ||||| ||||   || ||||||||    |||| ||||||   |||||||
seq2  TTCCTT-CGGT--CTTACCATCTCC---TCTAT-CAGAGCACAATCTTTT  88

seq1  CTCTTTCTCCTTAGAAACAAACAGGCATCTAAGGAAGAATAAGATGAAAT  150
      |||||||||  |||||   ||||||||||| |||||||   |||||||  
seq2  CTCTTTCTC--TAGAA--CAACAGGCATCT-AGGAAGA--TAGATGAA--  129

seq1  AAGATAATG-TAAATCCAGACAGGTCAGAAGAGGACAAAACAAAGACACA  199
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATGTTAAATCCAGACAGGTCAGAAGAGGACAAAACAAAGACACA  179

seq1  GAAAAAAAAAAAAAACCCTTA-TAGATGCAGAAGCACAGGAATTCACTAA  248
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAAAAACCTTATTAGATGCAGAAGCACAGGAATTCACTAA  229

seq1  TAACACATAATTGAAGCCATAATAAATTTTCAAAAAACTTGTGAAGTTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATAATTGAAGCCATAATAAATTTTCAAAAAACTTGTGAAGTTTC  279

seq1  AAAAGATGTCCTAACACAACATTATGAGACCAAGAACTTCCAAAAACGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGTCCTAACACAACATTATGAGACCAAGAACTTCCAAAAACGCT  329

seq1  GTTGAGTTTGTTCTGTGTTGGTCATTTACTGCTGGGCATGGGCCTACTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTTTGTTCTGTGTTGGTCATTTACTGCTGGGCATGGGCCTACTTA  379

seq1  CTGTTAAGAGTGGTTTGTATTCCCAGTGAGACCCTCTTGGGGGGTAAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAGAGTGGTTTGTATTCCCAGTGAGACCCTCTTGGGGGGTAAAAA  429

seq1  ACTAATTTTTCAGATTTTTTTTCTTTCAACTTCTCATTATACCCATGCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTTTCAGATTTTTTTTCTTTCAACTTCTCATTATACCCATGCAC  479

seq1  ACACTTCTAGTAAAGTTAGACCCTTCCATGTAATGAGAGGATCCTTTAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTAGTAAAGTTAGACCCTTCCATGTAATGAGAGGATCCTTTAAC  529

seq1  ATCTATTCAAATGCAAATTTCCCGATTTAATCCAATGTGGGCAAAAAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCAAATGCAAATTTCCCGATTTAATCCAATGTGGGCAAAAAAAT  579

seq1  GGTAGTTTATATCAAAATCGAGTTGATAGACTCAGGCCTGACCTGATCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTATATCAAAATCGAGTTGATAGACTCAGGCCTGACCTGATCCC  629

seq1  CCAAGCATCATGGTTTGAACTTCAGAAGAAACAAGGCAAAGCTTCTAATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATCATGGTTTGAACTTCAGAAGAAACAAGGCAAAGCTTCTAATG  679

seq1  TGGAGGCTGTGGAACACTTAAGAGTGTAAAAACCAACATGCTAATTCACG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTGTGGAACACTTAAGAGTGTAAAAACCAACATGCTAATTCACG  729

seq1  GAATTGAGGCTTGGAGGGCTACTACTATGACAGCTTTTCCAGTTTTCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAGGCTTGGAGGGCTACTACTATGACAGCTTTTCCAGTTTTCCAG  779

seq1  TTTGTCCTTTGGAAGCCTGGGGCTTTTACCTAGGGAGTTTATGAATCAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTTGGAAGCCTGGGGCTTTTACCTAGGGAGTTTATGAATCAAG  829

seq1  TAACTTGATTCTATAATGAAAATTCCATTTTTAGGAAATATGGGGCTGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGATTCTATAATGAAAATTCCATTTTTAGGAAATATGGGGCTGTT  879

seq1  TTTGTTCTTTAAACAGGAAGTTCTATTTAGAGTTTCAGCAAAGAAACCGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTTAAACAGGAAGTTCTATTTAGAGTTTCAGCAAAGAAACCGT  929

seq1  TCTAAATGAAAGTATTTCAGTTTGAAATAGTGTTGCTCTGATTCTCTGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGAAAGTATTTCAGTTTGAAATAGTGTTGCTCTGATTCTCTGCA  979

seq1  ATTACCTATTTTTTGTGTTAAGTAGTTTTCCTTTTCTGTTTACTAATTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTATTTTTTGTGTTAAGTAGTTTTCCTTTTCTGTTTACTAATTTA  1029

seq1  AATTATTAAGAGAATGCATCAATGTTTACTTTGTTTTGTTTTTGTTTTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAAGAGAATGCATCAATGTTTACTTTGTTTTGTTTTTGTTTTTA  1079

seq1  GAGACAGGGTTTCTCTGTATAGCCCTACTGTCCTGGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTATAGCCCTACTGTCCTGGAATTC  1120

seq1: chr3_82836847_82837958
seq2: B6Ng01-248H22.g_64_1180

seq1  GAATTCTGGCTAGGCAATGACTACCTCCACTTACTCACTCTGAGGGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTAGGCAATGACTACCTCCACTTACTCACTCTGAGGGGCTC  50

seq1  AGTTCTCAGGGTTGAATTAGAGGACTGGGCTGGAAAAGAGGCTTATGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGGGTTGAATTAGAGGACTGGGCTGGAAAAGAGGCTTATGCGG  100

seq1  AGTACCACTTCCGGGTAGGCTCTGAGGCAGAGGGCTACGCGCTGCAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCACTTCCGGGTAGGCTCTGAGGCAGAGGGCTACGCGCTGCAGGTC  150

seq1  TCCTCCTACCGGGGCACTGCTGGAGATGCTCTGGTGCAGGGCTCTGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTACCGGGGCACTGCTGGAGATGCTCTGGTGCAGGGCTCTGTGGA  200

seq1  GGAGGGGACAGAATACACCTCACACAGCAACATGCAGTTCAGTACCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGACAGAATACACCTCACACAGCAACATGCAGTTCAGTACCTTTG  250

seq1  ACAGAGATGCCGACCAATGGGAAGAGAACTGTGCAGAGGTCTATGGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATGCCGACCAATGGGAAGAGAACTGTGCAGAGGTCTATGGGGGA  300

seq1  GGCTGGTGGTACAACAGCTGTCAGGCCGCCAATCTCAATGGCATTTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGGTACAACAGCTGTCAGGCCGCCAATCTCAATGGCATTTACTA  350

seq1  CCCCGGGGGCACCTACGATCCCAGGAACAACAGCCCCTATGAGATAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGGGGCACCTACGATCCCAGGAACAACAGCCCCTATGAGATAGAGA  400

seq1  ACGGGGTGGTCTGGGTTCCCTTCAGAGGAGCAGATTATTCCCTCAGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGTGGTCTGGGTTCCCTTCAGAGGAGCAGATTATTCCCTCAGGGCC  450

seq1  GTTCGGATGAAAATCAGACCGCTGGTGGGACAATAGCTGAAGGGTTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGATGAAAATCAGACCGCTGGTGGGACAATAGCTGAAGGGTTAGAA  500

seq1  AGTGGGGGCTCTGTTTTCTTTGCTCGGTTATCCGAGAAGAAAGACAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGCTCTGTTTTCTTTGCTCGGTTATCCGAGAAGAAAGACAAAAC  550

seq1  GGAAGATGAAGGTGTCACGGATCTTGTGAACTTTTTAAAACTTTCAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGAAGGTGTCACGGATCTTGTGAACTTTTTAAAACTTTCAAGGT  600

seq1  GCTATTCCATTGTTCTTTGTACTGTAGCTAAATGTAACTGAGATGAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCCATTGTTCTTTGTACTGTAGCTAAATGTAACTGAGATGAGTTA  650

seq1  CTGCTTTGAAAAAATAAAGTTTTACATTTTTTCCACCCTTTAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGAAAAAATAAAGTTTTACATTTTTTCCACCCTTTAAAAAAAAA  700

seq1  AAACCCTATGAGTTTTAAAGCATTTGCAAGAAGATGCCAAGGGATATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTATGAGTTTTAAAGCATTTGCAAGAAGATGCCAAGGGATATTCA  750

seq1  TTCCATCGGGAAGAGGGAGTCCGACTAGAGCTCTTCTTAAGGGTGGCCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCGGGAAGAGGGAGTCCGACTAGAGCTCTTCTTAAGGGTGGCCGC  800

seq1  TTCTTTTCTCAGACCCACCCCACCCCCGGTC-ATAAGCCCATTGCAAGTA  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTTTTCTCAGACCCACCCCACCCCCGGTCAATAAGCCCATTGCAAGTA  850

seq1  CAGAAGCTCATTTACGC-AGGAGACAGTGTGGGCTCT-AAGGTGATGTTC  897
      ||||||||||||||||| ||||||||||||||||||| ||| ||||||||
seq2  CAGAAGCTCATTTACGCAAGGAGACAGTGTGGGCTCTAAAGTTGATGTTC  900

seq1  GGGACCCAGAGTAACTTTGCTTCAGTGTTCGCTCCACCTTATGCTTTG-A  946
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGACCCAGAGTAACTTTGCTTCAGTGTTCGCTCCACCTTATGCTTTGAA  950

seq1  GACA-GAGTCTCACAGAA-CCAGGAGTGGACTTTCCAGTTT--CTCGAGA  992
      |||| ||||||||||||| ||||||||||||||||||||||   ||||||
seq2  GACAGGAGTCTCACAGAACCCAGGAGTGGACTTTCCAGTTTTCTTCGAGA  1000

seq1  --CTGGCTGGCCGGGGAGTCCCATGGGTCCTC-TGATTGCTGGCATCCCC  1039
         ||||  |||||||||| |||| ||||||| ||| |||||||||||| 
seq2  ACTTGGCCTGCCGGGGAGT-CCAT-GGTCCTCTTGAATGCTGGCATCCC-  1047

seq1  AGGGCCTTGTCACTTCCCCTGGATGCTTGTGTGGTTGTTTGGGAG-CTGG  1088
        |||||  |||||||||  | |||| |||||| |   ||||||| ||||
seq2  -AGGCCTGTTCACTTCCCTGGAATGC-TGTGTGAT--GTTGGGAGCCTGG  1093

seq1  AATCAGGTCCTCTGGTTTCCACAT  1112
      ||||| || |||| | ||||||||
seq2  AATCAAGTTCTCTTGATTCCACAT  1117