BAC Information

Click to search

BAC

Clone NameB6Ng01-249B07
Chromosome3 (Build37)
Map Location 6,350,323 - 6,351,276
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214
Downstream geneLOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249B07.bB6Ng01-249B07.g
ACCGA056991GA056992
length9631,175
definitionB6Ng01-249B07.b B6Ng01-249B07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgttcatgtggctatcttctttaggtttgatgaaagattacttt
cttgctttttttgagcttagtttccttcattgtgttgaagttttcccttt
attatcctttgaaaggctagatttgtggactgtcattgtgtaagtttggt
tttgtcatggaatacttcggtttctctatctatagtaattgagagttttg
ctgggtatagtagcctgggctcacatttgtgttctcttagggtctgtatg
acatattcccaggatcttctggctttcatagtctctggagagaagtcagg
tataattctgataggtctgcctttatgttacttgacatttttcccttact
gcttttaatctttctttgttttgtgcattaggttttttgattattatgtg
aggggaggaatttcttttctggtccaaactatttggatttctgtaggttt
cttttatgttcatgagcatctctttcttaagttgaggaagttttcttcta
ttattttgttgaagacatttactggccatttaagtcagaaatcttctttc
tcatctatatctattatctttacgtttggtcttctcattgtttcctggat
ttcctggatgttttgagttaggatctttttgcatttcacatttcctttga
ctatcatattaatgttttctatggtatcttcggcacctgagatttctcta
ttctatctctttgtattctgttggttatgcttgtatcaatggtttctcat
tttcagactggtcttccctttatgattttctttactttttcaaattccat
tttttagactctggatagttttgttcaatttctttcaccttaatttggat
gtgttctcctgtatttcctttaagggaattattttattcccttcttaaat
tcctccatcatcatcatgagaaatggactttagatccctatcttgctttt
ctggtggtgatgc
gaattctttgtacattttagatacagggctggtaaaggttttccctcctt
ctgtatgctgcatcttcatttaaataatgtcatttcctgaacaaaccctt
tttagtttcactgtgtgtcttttgtcctttgttggttttgatacctgtgc
taccaggatcatatggagaaagggtttccttcagccatatgtttaagcat
attcccaagattcagggtgttggtcgtaggttcaagtccttgatccattt
agaactgagctttttccaggtgagaaaagggaagatcaaggttcattcct
ctacatgtagctatacagtttgaccagaatcacttattgaagatcctgtc
ttttctccagtgtttattattgtcttctttgcaaaaataataataataaa
aaagtcatgtggcagttgggggttaggcttataatgagtctttcccttta
ttccagtgatcagtgtatcttcttttatcccagagccatgcattttgctg
ctgctgttgttgttgttactgtagctcttgcagtttaatatgaaatcgga
tatcttggtacttttagcagtgtttctattttctaggtgatttttggcta
ttatcatttgtatttttaaatattcagtttctttgaagaattattttgaa
atttatttgtgtgttgcagtgctaactgagacagccaatatggaaatcag
ggtggatgccctgccctgcaaaaacaaaacaaaccaaaaaaacaaaaaat
aacaaaaaaaaagaccagaaatgattctactatattatctgatgtacaac
tcttaagaaaatactttaagtaactatctaactacaaaaaaatacttgct
catcttatttggttgcttctcttattctcaacaaacttgtgtatgaaata
aaaagtgtaattaccctgtcaattagataaaggggaattaattgaaaagt
gtttgtacatatattaaaatgaaaatattaattccactctataaaaactg
tgcattataaaaatcttgccatgtgtgaaatcggttgatgctagaaatta
ttcactgttggaggttaggtttgtccagaaaaaacttcttgtttatgttt
actctctttttcattattatctagaatttccagaaatttctgaagatttt
ctaaatctgtgtggttttttagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6350323_6351276
seq2: B6Ng01-249B07.g_239_1242

seq1  GGGTTTCCTTCAGCCATATGTTTAAGCATATTCCCAAGATTCAGGGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCCTTCAGCCATATGTTTAAGCATATTCCCAAGATTCAGGGTGTT  50

seq1  GGTCGTAGGTTCAAGTCCTTGATCCATTTAGAACTGAGCTTTTTCCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTAGGTTCAAGTCCTTGATCCATTTAGAACTGAGCTTTTTCCAGGT  100

seq1  GAGAAAAGGGAAGATCAAGGTTCATTCCTCTACATGTAGCTATACAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGGGAAGATCAAGGTTCATTCCTCTACATGTAGCTATACAGTTT  150

seq1  GACCAGAATCACTTATTGAAGATCCTGTCTTTTCTCCAGTGTTTATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAATCACTTATTGAAGATCCTGTCTTTTCTCCAGTGTTTATTATT  200

seq1  GTCTTCTTTGCAAAAATAATAATAATAAAAAAGTCATGTGGCAGTTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTGCAAAAATAATAATAATAAAAAAGTCATGTGGCAGTTGGGG  250

seq1  GTTAGGCTTATAATGAGTCTTTCCCTTTATTCCAGTGATCAGTGTATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCTTATAATGAGTCTTTCCCTTTATTCCAGTGATCAGTGTATCTT  300

seq1  CTTTTATCCCAGAGCCATGCATTTTGCTGCTGCTGTTGTTGTTGTTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCCCAGAGCCATGCATTTTGCTGCTGCTGTTGTTGTTGTTACTG  350

seq1  TAGCTCTTGCAGTTTAATATGAAATCGGATATCTTGGTACTTTTAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTTGCAGTTTAATATGAAATCGGATATCTTGGTACTTTTAGCAGT  400

seq1  GTTTCTATTTTCTAGGTGATTTTTGGCTATTATCATTTGTATTTTTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATTTTCTAGGTGATTTTTGGCTATTATCATTTGTATTTTTAAAT  450

seq1  ATTCAGTTTCTTTGAAGAATTATTTTGAAATT--ATTGTGTGTTGCAGTG  498
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  ATTCAGTTTCTTTGAAGAATTATTTTGAAATTTATTTGTGTGTTGCAGTG  500

seq1  CTAACTGAGACAGCCAATATGGAAATCAGGGTGGATGCCCTGCCCTGCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGAGACAGCCAATATGGAAATCAGGGTGGATGCCCTGCCCTGCAA  550

seq1  AAACAAAACAAACCAAAAAAACAAAAAATAACAAAAAAAAAGACCAGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAACCAAAAAAACAAAAAATAACAAAAAAAAAGACCAGAAA  600

seq1  TGATTCTACTATATTATCTGATGTACAACTCTTAAGAAAATAC-TTAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGATTCTACTATATTATCTGATGTACAACTCTTAAGAAAATACTTTAAGT  650

seq1  AACTATCTAACTACAAAAAAATACTTGCTCATC-TATTT-GTTGCTTCTC  695
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  AACTATCTAACTACAAAAAAATACTTGCTCATCTTATTTGGTTGCTTCTC  700

seq1  -TATTCTCAACAAACT--GGTATGAA--AAAAAGTGTAA-TAACCTGTCA  739
       |||||||||||||||   |||||||  ||||||||||| || |||||||
seq2  TTATTCTCAACAAACTTGTGTATGAAATAAAAAGTGTAATTACCCTGTCA  750

seq1  A-TAGATAA--GGGAA-TAAT--GAAAGTG-TTGTACATATA-TAAAATG  781
      | |||||||  ||||| ||||   |||||| ||||||||||| |||||||
seq2  ATTAGATAAAGGGGAATTAATTGAAAAGTGTTTGTACATATATTAAAATG  800

seq1  -AAATATTA--TTCAC-CTAT-AAAACT-TGCATTATAAAAATC-TGCCA  824
       ||||||||  | ||| |||| |||||| ||||||||||||||| |||||
seq2  AAAATATTAATTCCACTCTATAAAAACTGTGCATTATAAAAATCTTGCCA  850

seq1  TGTG---AATCGG-TGAAGCTAGAAA-TATTCACTGT--GAG--TAAGGT  865
      ||||   |||||| ||| |||||||| ||||||||||  |||  || | |
seq2  TGTGTGAAATCGGTTGATGCTAGAAATTATTCACTGTTGGAGGTTAGGTT  900

seq1  AGCCCAG-AAAAACATCT--GTTATG-TTACACTC--TTTCA-TAATATC  908
       | |||| |||||| |||   ||||| |||| |||  ||||| || ||||
seq2  TGTCCAGAAAAAACTTCTTGTTTATGTTTACTCTCTTTTTCATTATTATC  950

seq1  TAG-ATTTCCAG-AATTTC---AGAATTTCTAGATCTGTGTG---TTTTA  950
      ||| |||||||| ||||||   ||| |||||| |||||||||   |||||
seq2  TAGAATTTCCAGAAATTTCTGAAGATTTTCTAAATCTGTGTGGTTTTTTA  1000

seq1  GAAA  954
      ||||
seq2  GAAA  1004