BAC Information

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BAC

Clone NameB6Ng01-249G07
Chromosome3 (Build37)
Map Location 76,738,371 - 76,850,713
singlet/doubletdoublet
Overlap geneLOC100041635
Upstream geneGolph4, Fstl5, LOC100041625
Downstream geneDnmt3a-ps1, EG626461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249G07.bB6Ng01-249G07.g
ACCGA057227GA057228
length1,1491,167
definitionB6Ng01-249G07.b B6Ng01-249G07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,738,371 - 76,739,530)(76,849,520 - 76,850,713)
sequence
gaattctagccaagagaaaataaaataatctcttatagaggattcctttg
tgtctataacacattataaatatactaatttaactatcagattaagtgat
cattttacatctcaggtaagttttagataggctctttttgttcttgatga
agatcttgtctttagccttattttactgcttcagttttatttgttttgtt
aatttcagttcgtgagaaatacaaatactagaagcatggatatgttggga
acattttttggtcctctttgacatttgtaatgtcatctgtaagataacta
atacttttcttgttaattttcaaacttcattcaatgttattttgaatttt
gtgtgttatctctttgtctattgatgtgaagaaacaacatgactcactca
attcacagaagaaagagtttacttggggcttatactttcaatggattaga
gtctattaccatcactgtggagagaacagcagcaagcaggcagacatggt
gctgtagcagtagctgaacgtttgtaactcatctataagcaagagtcaaa
gagagaactaattgcaaatggtgtggcattctgaagcctcaaaccccagc
gtctagtgatgcatctcctccaacaatgttctatcccctaatctgtctga
aaagattccaccaactggggactaagcatttaaatatatgagcttgtgaa
agaaagatattcacattcaaaccactatattgtggtaatagagtgtttat
ctcttttgtccttattaaatagttcttttctttctgtgtaatttccagtg
tgtgtctctttggaatcccacacgaacatagcaggaatcattaattatgt
cagtgaatgtaagagaaagagaactaacatttatttttaatcttcaattt
taagaggcaatcaaagacatttaaaattaattactcattaaatatcatta
caagtgtaggaaatagcttcttgtttcttattaccaatgatagacaaatt
taaggtatgtaaatcaagcaatgctcatatttcctcagtaattttggtca
aaattaattttattagaatgtggttatcaaattccgtttcaagttcattc
agcattcaaacatgtattggaccctgtaattgtaagatgaactcaagaa

gaattccagacaattttcataccttcgcaaaagaaatgcttgctttgaat
ttttcttttcttttctttctctctctctttttttaaacttacagttttgt
cttcaagaaaaggctttaatctcctttgtgttctcttgcgcctttggcta
agttctaatacaaagtgcttttaccaccccacagcctctggcctggagca
cagttgcaatgctgatggttgttcttaagaacttgcttttcttcacctct
ggaattctcagccgtcaagcgactgtgctttttcagtgacagatgaggta
ttcatttctgtcctttatttttacttggaaggaaaatgctttatttccca
tttactttaatgtatttctgaaggaggggtttttaggaagtaaaattttc
tggcattctaaaggctccccttgctgtgtgtgattctgggatacttcttt
cagtctttcctcttgtcacccaaactatgcctctgtttgctcacaagctt
ctccatacattttacaggacatcgttcattgtgaaacctacaaattgtag
tgctgagggaaagaatccatttttcaaaaaaataatttctgtcttctcct
cctaacttctataatgctacccaaaggatacaatttatccacttaaaatc
tatccccatcacaagatcaatccattgttgttctattttccttccccaaa
gaacacttcatcttggctgagatccacctcatgcttgtaaactcataaat
taccctgtggaacagataggagagattttccttctgacatcaaacatttg
gatgtgtttgtaatatactatgaagtagtttatacttagaatgccaatcc
tttttcaggaaagtggtgtaattaggaaaaaaatcaatggttttcttata
ctcaaggaagaaagacataaagttgtccccagagagaacttgtatgttaa
ttcttaaccatgtgtgcataaacacggagagagctcctttattagttccc
aggtaagtttgatatagcactacactatatttgtactcaaatatatgtcg
ctacatatatttttctgttatattgataaaaattcacagatattatgtcc
atactatgattatgtcatcccaggaaaactatcctatataccttacgtaa
ctccttactgtgagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76738371_76739530
seq2: B6Ng01-249G07.b_42_1190

seq1  GAATTCTAGCCAAGAGAAAATAAAATAATCTCTTATAGAGGATTCCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCCAAGAGAAAATAAAATAATCTCTTATAGAGGATTCCTTTG  50

seq1  TGTCTATAACACATTATAAATATACTAATTTAACTATCAGATTAAGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATAACACATTATAAATATACTAATTTAACTATCAGATTAAGTGAT  100

seq1  CATTTTACATCTCAGGTAAGTTTTAGATAGGCTCTTTTTGTTCTTGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACATCTCAGGTAAGTTTTAGATAGGCTCTTTTTGTTCTTGATGA  150

seq1  AGATCTTGTCTTTAGCCTTATTTTACTGCTTCAGTTTTATTTGTTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTGTCTTTAGCCTTATTTTACTGCTTCAGTTTTATTTGTTTTGTT  200

seq1  AATTTCAGTTCGTGAGAAATACAAATACTAGAAGCATGGATATGTTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGTTCGTGAGAAATACAAATACTAGAAGCATGGATATGTTGGGA  250

seq1  ACATTTTTTGGTCCTCTTTGACATTTGTAATGTCATCTGTAAGATAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTTGGTCCTCTTTGACATTTGTAATGTCATCTGTAAGATAACTA  300

seq1  ATACTTTTCTTGTTAATTTTCAAACTTCATTCAATGTTATTTTGAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTCTTGTTAATTTTCAAACTTCATTCAATGTTATTTTGAATTTT  350

seq1  GTGTGTTATCTCTTTGTCTATTGATGTGAAGAAACAACATGACTCACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTATCTCTTTGTCTATTGATGTGAAGAAACAACATGACTCACTCA  400

seq1  ATTCACAGAAGAAAGAGTTTACTTGGGGCTTATACTTTCAATGGATTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGAAGAAAGAGTTTACTTGGGGCTTATACTTTCAATGGATTAGA  450

seq1  GTCTATTACCATCACTGTGGAGAGAACAGCAGCAAGCAGGCAGACATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTACCATCACTGTGGAGAGAACAGCAGCAAGCAGGCAGACATGGT  500

seq1  GCTGTAGCAGTAGCTGAACGTTTGTAACTCATCTATAAGCAAGAGTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGCAGTAGCTGAACGTTTGTAACTCATCTATAAGCAAGAGTCAAA  550

seq1  GAGAGAACTAATTGCAAATGGTGTGGCATTCTGAAGCCTCAAACCCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACTAATTGCAAATGGTGTGGCATTCTGAAGCCTCAAACCCCAGC  600

seq1  GTCTAGTGATGCATCTCCTCCAACAATGTTCTATCCCCTAATCTGTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTGATGCATCTCCTCCAACAATGTTCTATCCCCTAATCTGTCTGA  650

seq1  AAAGATTCCACCAACTGGGGACTAAGCATTTAAATATATGAGCTTGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCCACCAACTGGGGACTAAGCATTTAAATATATGAGCTTGTGAA  700

seq1  AGAAAGATATTCACATTCAAACCACTATATTGTGGTAATAGAGTGTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATATTCACATTCAAACCACTATATTGTGGTAATAGAGTGTTTAT  750

seq1  CTCTTTTGTCCTTATTAAATAGTTCTTTTCTTTCTGTGTAATTTCCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGTCCTTATTAAATAGTTCTTTTCTTTCTGTGTAATTTCCAGTG  800

seq1  TGTGTCTCTTTGGAATCCCACACGAACATAGCAGGAATCATTAATTATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCTTTGGAATCCCACACGAACATAGCAGGAATCATTAATTATGT  850

seq1  CAGTGAATGTAAGAGAAAGAGAACTAACATTTATTTTTAATCTTCAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATGTAAGAGAAAGAGAACTAACATTTATTTTTAATCTTCAATTT  900

seq1  TAAGAGGCAATCAAAGACATTTAAAATTAATTACTCATTTAAATATCATT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAAGAGGCAATCAAAGACATTTAAAATTAATTACTCA-TTAAATATCATT  949

seq1  ACAAGTGTAGGAAATAGCTTCTTGTTTTCTTATTACCAATGATAGAACAA  1000
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  ACAAGTGTAGGAAATAGCTTCTTG-TTTCTTATTACCAATGATAG-ACAA  997

seq1  AATTTAGGTATGTAAATCAAGCAATGCTCATAATTTTCCTCAGTAATTTT  1050
      | || |||||||||||||||||||||||||||  |||||||||||| |||
seq2  ATTTAAGGTATGTAAATCAAGCAATGCTCATA--TTTCCTCAGTAA-TTT  1044

seq1  TGGTCAAAATTTATTTTATTAGAATGT-GTTATCAAATTCCGTTTCAAGT  1099
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  TGGTCAAAATTAATTTTATTAGAATGTGGTTATCAAATTCCGTTTCAAGT  1094

seq1  TCCATTCAGCAATTTCCAAACATGTATTGGACCCTGT-ATTGTAAAGATG  1148
      | |||||||||   | ||||||||||||||||||||| ||||| ||||||
seq2  T-CATTCAGCA---TTCAAACATGTATTGGACCCTGTAATTGT-AAGATG  1139

seq1  AAACTCAGAGAA  1160
       |||||| ||||
seq2  -AACTCA-AGAA  1149


seq1: chr3_76849520_76850713
seq2: B6Ng01-249G07.g_64_1230 (reverse)

seq1  ATGCTCACAGTAAGGAAGTTACGTGAAAGAGTA-ATAAGATAGTTTTTCT  49
      ||||||||||||||| ||||||||  ||| ||| ||| |||||||||   
seq2  ATGCTCACAGTAAGG-AGTTACGT--AAG-GTATATAGGATAGTTTT---  43

seq1  CCTTGTGATGGACATAATCATAGTTATGGACCATAAATAATCTGTGAAAT  99
       | || ||| ||||||||||||| |||||| |||||   |||||||||  
seq2  -CCTGGGAT-GACATAATCATAG-TATGGA-CATAA--TATCTGTGAA--  85

seq1  TTTTTATCAATTATAAACAGAAAAA-ATATTATGGTAGCGAACATATATT  148
      |||||||||| ||| |||||||||| ||||    |||||| |||||||||
seq2  TTTTTATCAA-TAT-AACAGAAAAATATAT----GTAGCG-ACATATATT  128

seq1  TGAAGTACAAATATTAGTGTAGTGCTTATATCAAAACTTACCTGGGAACT  198
      || |||||||||| ||||||||||| |||||| |||||||||||||||||
seq2  TG-AGTACAAATA-TAGTGTAGTGC-TATATC-AAACTTACCTGGGAACT  174

seq1  AATAAAGGAGCTCTTCTCCGTGTTTTATTGCACACATGGTTAAGAATTAA  248
      ||||||||||||| |||||||||||   ||||||||||||||||||||||
seq2  AATAAAGGAGCTC-TCTCCGTGTTT--ATGCACACATGGTTAAGAATTAA  221

seq1  CATACAAGTTCTCTCTGGGGACAACTTTATGTCTTTCTTCCTTGAGTATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAGTTCTCTCTGGGGACAACTTTATGTCTTTCTTCCTTGAGTATA  271

seq1  AGAAAACCATTGATTTTTTTCCTAATTACACCACTTTCCTGAAAAAGGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCATTGATTTTTTTCCTAATTACACCACTTTCCTGAAAAAGGAT  321

seq1  TGGCATTCTAAGTATAAACTACTTCATAGTATATTACAAACACATCCAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCTAAGTATAAACTACTTCATAGTATATTACAAACACATCCAAA  371

seq1  TGTTTGATGTCAGAAGGAAAATCTCTCCTATCTGTTCCACAGGGTAATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATGTCAGAAGGAAAATCTCTCCTATCTGTTCCACAGGGTAATTT  421

seq1  ATGAGTTTACAAGCATGAGGTGGATCTCAGCCAAGATGAAGTGTTCTTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTACAAGCATGAGGTGGATCTCAGCCAAGATGAAGTGTTCTTTG  471

seq1  GGGAAGGAAAATAGAACAACAATGGATTGATCTTGTGATGGGGATAGATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAAAATAGAACAACAATGGATTGATCTTGTGATGGGGATAGATT  521

seq1  TTAAGTGGATAAATTGTATCCTTTGGGTAGCATTATAGAAGTTAGGAGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGGATAAATTGTATCCTTTGGGTAGCATTATAGAAGTTAGGAGGA  571

seq1  GAAGACAGAAATTATTTTTTTGAAAAATGGATTCTTTCCCTCAGCACTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAAATTATTTTTTTGAAAAATGGATTCTTTCCCTCAGCACTAC  621

seq1  AATTTGTAGGTTTCACAATGAACGATGTCCTGTAAAATGTATGGAGAAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTAGGTTTCACAATGAACGATGTCCTGTAAAATGTATGGAGAAGC  671

seq1  TTGTGAGCAAACAGAGGCATAGTTTGGGTGACAAGAGGAAAGACTGAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCAAACAGAGGCATAGTTTGGGTGACAAGAGGAAAGACTGAAAG  721

seq1  AAGTATCCCAGAATCACACACAGCAAGGGGAGCCTTTAGAATGCCAGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCCCAGAATCACACACAGCAAGGGGAGCCTTTAGAATGCCAGAAA  771

seq1  ATTTTACTTCCTAAAAACCCCTCCTTCAGAAATACATTAAAGTAAATGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTTCCTAAAAACCCCTCCTTCAGAAATACATTAAAGTAAATGGG  821

seq1  AAATAAAGCATTTTCCTTCCAAGTAAAAATAAAGGACAGAAATGAATACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCATTTTCCTTCCAAGTAAAAATAAAGGACAGAAATGAATACC  871

seq1  TCATCTGTCACTGAAAAAGCACAGTCGCTTGACGGCTGAGAATTCCAGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTCACTGAAAAAGCACAGTCGCTTGACGGCTGAGAATTCCAGAG  921

seq1  GTGAAGAAAAGCAAGTTCTTAAGAACAACCATCAGCATTGCAACTGTGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAAAAGCAAGTTCTTAAGAACAACCATCAGCATTGCAACTGTGCT  971

seq1  CCAGGCCAGAGGCTGTGGGGTGGTAAAAGCACTTTGTATTAGAACTTAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCAGAGGCTGTGGGGTGGTAAAAGCACTTTGTATTAGAACTTAGC  1021

seq1  CAAAGGCGCAAGAGAACACAAAGGAGATTAAAGCCTTTTCTTGAAGACAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCGCAAGAGAACACAAAGGAGATTAAAGCCTTTTCTTGAAGACAA  1071

seq1  AACTGTAAGTTTAAAAAAAGAGAGAGAGAAAGAAAAGAAAAGAAAAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAAGTTTAAAAAAAGAGAGAGAGAAAGAAAAGAAAAGAAAAATTC  1121

seq1  AAAGCAAGCATTTCTTTTGCGAAGGTATGAAAATTGTCTGGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGCATTTCTTTTGCGAAGGTATGAAAATTGTCTGGAATTC  1167


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