BAC Information

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BAC

Clone NameB6Ng01-249H03
Chromosome3 (Build37)
Map Location 113,887,879 - 113,982,844
singlet/doubletdoublet
Overlap geneCol11a1
Upstream geneOTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249H03.bB6Ng01-249H03.g
ACCGA057262GA057263
length1,1501,131
definitionB6Ng01-249H03.b B6Ng01-249H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,887,879 - 113,889,033)(113,981,497 - 113,982,844)
sequence
gaattctttttagtgtgtttgaacattgaacttgaattgtaacactattt
ttttactctcttttccaccccaataaatatgaacataactcaaagacaat
atgtttcgtaaccgaaaatcatccagatactttaattagtatatgaattt
tgaaagactgcatttgcatgagtgaagtcattaaaactataacgtgttca
ttacatacattgtgtttggtggattgtccataataaaaaccaacaaacct
tgctacattaaataaacctgtattaattaaaatcgattattctaacttaa
attaagctgctataaaaatactacattccctttgcaatctggaagtattc
ttactctctaatgtacagggttcataactactgacctgtagctcctatag
ttcagttcctgatagatgttttgcaatgcagaatatagactccagtacca
gagcacattccagcccacagtactaatgtgacaaccttgaatcagagctt
gtaaagtaactctttcttttgtttgtgttctgaagggtctcaaaggagag
agaggagagaaaggagaagctgggccccctggtgctgcaggtcctgctgg
tattaaggggccaccaggtgatgatgggcccaaggggaacccggtgagtt
tgtcttctttaaagtgaaatttgtatctgactcattgcttagcttttcac
agatagactagaaatgtggggttcttgtgaaacctatgtcattatgtcat
tttatattttcacgtacattaatttcagtttctgttttgttcatttattc
ttctatctggagcacatatctaaccagcctttgagataactttaagctgt
taaaaataaaaatacaacatgatgatccttcctttttaatctgtttattt
tcctttttttcatctctctagggacccgttgggtttcctggagatcctgg
gtccactggagaacctggtcctgcagtagtgtcatgtaggaataaacgat
gcttgggtggggctgttccctcagtcttaagcaacattgttttttttttt
tttaaaaatatattaaagtgactacagtcagaaatgccaatggagaaaac
agtgattgcatggatgacaatatctatttacctgaatgactctgcacctt


gaattcctcagttgctactacaggaacaattagaacagctcatgtgagca
gctctgcatcatttcttagcttcaatgagcagcactgcacgcagcttttc
aacaatatcctcaaagggactcatttcagaaaccactgggaaaagctcaa
cgaagatgaaagtctggcaagaaactctgccaacttaggaacttgagcct
ttggaccttgaggtatgaaacagttttatgactagtttaacagcaagaca
tcaataagctctttaaaaaaaaagaaagaaagaaaagaagaaagagaaaa
agggaaaagaaaaaatgcctgggtgataatgccttcactgtgacagtcct
tatcagtaattaccatgatctttttaagtcataatttactcaaaatgtgt
acataaatacatacatagaataatatgaatagataaatgtagatgtacat
agagaataagagaagagatagagttaaataattttccctaaatgtcaaac
ttatcaatacaatgtaaagataacctgctgcattaataattgaattaatt
ataaaatattttaagtgatgtgaaataaacaatataagaaactttttaat
ttcgctcacttaaactagtcatggggcaaatttgtcaagaaacaaaatga
gtgtttgttacccaaaacataaggagctgctattggatgggtacagaaaa
tgccaagtttgtaagaaggaaagttctgaagacggctgtgaaataattct
taatactattgggctgaaaatgtttaaattgttagagtcattcaagtttt
gaataattaatataaaggccctttgttaaaattattgcacttaatcctaa
cattgctttaaaatcgttgatacggcccttccgctcgactcgtgactcga
gccccaggctaccttgccagcagagtcttgcccaacacccgcaagggtcc
acacaggactccccacgggaccctaagacctctggtgaggtggatcacag
tgcttgcccaatccaatcgcgcgaactcgagaactgcagtacataggaag
caagctactggactgatctggggcacagttcctcgcctccatcgagactc
gagcccggcctacatgccagcaagtcttgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113887879_113889033
seq2: B6Ng01-249H03.b_45_1194

seq1  GAATTCTTTTTAGTGTGTTTGAACATTGAACTTGAATTGTAACACTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAGTGTGTTTGAACATTGAACTTGAATTGTAACACTATTT  50

seq1  TTTTACTCTCTTTTCCACCCCAATAAATATGAACATAACTCAAAGACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCTCTTTTCCACCCCAATAAATATGAACATAACTCAAAGACAAT  100

seq1  ATGTTTCGTAACCGAAAATCATCCAGATACTTTAATTAGTATATGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCGTAACCGAAAATCATCCAGATACTTTAATTAGTATATGAATTT  150

seq1  TGAAAGACTGCATTTGCATGAGTGAAGTCATTAAAACTATAACGTGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACTGCATTTGCATGAGTGAAGTCATTAAAACTATAACGTGTTCA  200

seq1  TTACATACATTGTGTTTGGTGGATTGTCCATAATAAAAACCAACAAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATACATTGTGTTTGGTGGATTGTCCATAATAAAAACCAACAAACCT  250

seq1  TGCTACATTAAATAAACCTGTATTAATTAAAATCGATTATTCTAACTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACATTAAATAAACCTGTATTAATTAAAATCGATTATTCTAACTTAA  300

seq1  ATTAAGCTGCTATAAAAATACTACATTCCCTTTGCAATCTGGAAGTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCTGCTATAAAAATACTACATTCCCTTTGCAATCTGGAAGTATTC  350

seq1  TTACTCTCTAATGTACAGGGTTCATAACTACTGACCTGTAGCTCCTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTCTAATGTACAGGGTTCATAACTACTGACCTGTAGCTCCTATAG  400

seq1  TTCAGTTCCTGATAGATGTTTTGCAATGCAGAATATAGACTCCAGTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCTGATAGATGTTTTGCAATGCAGAATATAGACTCCAGTACCA  450

seq1  GAGCACATTCCAGCCCACAGTACTAATGTGACAACCTTGAATCAGAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACATTCCAGCCCACAGTACTAATGTGACAACCTTGAATCAGAGCTT  500

seq1  GTAAAGTAACTCTTTCTTTTGTTTGTGTTCTGAAGGGTCTCAAAGGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTAACTCTTTCTTTTGTTTGTGTTCTGAAGGGTCTCAAAGGAGAG  550

seq1  AGAGGAGAGAAAGGAGAAGCTGGGCCCCCTGGTGCTGCAGGTCCTGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGAAAGGAGAAGCTGGGCCCCCTGGTGCTGCAGGTCCTGCTGG  600

seq1  TATTAAGGGGCCACCAGGTGATGATGGGCCCAAGGGGAACCCGGTGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGGGGCCACCAGGTGATGATGGGCCCAAGGGGAACCCGGTGAGTT  650

seq1  TGTCTTCTTTAAAGTGAAATTTGTATCTGACTCATTGCTTAGCTTTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTTAAAGTGAAATTTGTATCTGACTCATTGCTTAGCTTTTCAC  700

seq1  AGATAGACTAGAAATGTGGGGTTCTTGTGAAACCTATGTCATTATGTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGACTAGAAATGTGGGGTTCTTGTGAAACCTATGTCATTATGTCAT  750

seq1  TTTATATTTTCACGTACATTAATTTCAGTTTCTGTTTTGTTCATTTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTCACGTACATTAATTTCAGTTTCTGTTTTGTTCATTTATTC  800

seq1  TTCTATCTGGAGCACATATCTAACCAGCCTTTGAGATAACTTTAAGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTGGAGCACATATCTAACCAGCCTTTGAGATAACTTTAAGCTGT  850

seq1  TAAAAATAAAAATACAACATGATGATCCTTCCTTTTTAATCTGTTTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAAAATACAACATGATGATCCTTCCTTTTTAATCTGTTTATTT  900

seq1  TCCTTTTTTTCATCTCTCTAGGGACCCGTTGGGTTTCCTGGAGATCCT-G  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCTTTTTTTCATCTCTCTAGGGACCCGTTGGGTTTCCTGGAGATCCTGG  950

seq1  GTCCACCTGGAGAACCTGGTCCTGCAGTAAGTGTCATGTAGGAATAAAAG  999
      ||||| |||||||||||||||||||||| |||||||||||||||| ||| 
seq2  GTCCA-CTGGAGAACCTGGTCCTGCAGT-AGTGTCATGTAGGAAT-AAAC  997

seq1  GATGCTTGGGTGGGGCTGTTCCCTCAGTCTTAAGCAACATTTGTTTTTTT  1049
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATGCTTGGGTGGGGCTGTTCCCTCAGTCTTAAGCAACA-TTGTTTTTTT  1046

seq1  TTTTTTAAAAAATATATTAAAAGTGAACTACAGTCAG-AATGCCAAATGA  1098
      |||||| ||||||||||| |||||| ||||||||||| |||||| |||| 
seq2  TTTTTTTAAAAATATATT-AAAGTG-ACTACAGTCAGAAATGCC-AATGG  1093

seq1  AGAAAACAGTGATTGCATTGATGACAATATCTATTTAACTG-ATGACTCT  1147
      |||||||||||||||||| |||||||||||||||||| ||| ||||||| 
seq2  AGAAAACAGTGATTGCATGGATGACAATATCTATTTACCTGAATGACTC-  1142

seq1  TGCACCTT  1155
      ||||||||
seq2  TGCACCTT  1150


seq1: chr3_113981497_113982844
seq2: B6Ng01-249H03.g_65_1195 (reverse)

seq1  GGCAAGACTCTGCTGTCAAGGTAGCCCGGGGCTCGAGTCTCGAGTCGAGC  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGAAGGGACTTGTGCCCCAGATCAGGCCCGGGTAGCCTGCTTCCCTATGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACCGCAGTCTCAAGTTCCGCGCGATTGGATTGGGGCAGGCACTGTGATCC  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACTCACCAGAGGTCTTAGGGTCCCGTGGGGAGTCTCGTGTGGACCCTTGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCCCGGGGCTCGAGTCTCG  250
              ||||||||| ||||||| | |||| || ||||||||||||||
seq2  --------GGCAAGACT-TGCTGGC-ATGTAGGCC-GGGCTCGAGTCTCG  39

seq1  AGTGGAGCGGAAGGGACTTGTGCCCCAGATCAGGCCCGGGTAGCCTGCTT  300
      | |||||  ||  |||  ||||||||||||||| ||   ||||| |||||
seq2  A-TGGAGGCGA--GGAACTGTGCCCCAGATCAGTCC--AGTAGCTTGCTT  84

seq1  CCCTATGTACTGCAG-TCTCGAGTTCCGCGCGATTGGATTGGGGCAGGCA  349
       |||||||||||||| ||||||||| |||||||||||||| ||||| |||
seq2  -CCTATGTACTGCAGTTCTCGAGTT-CGCGCGATTGGATT-GGGCAAGCA  131

seq1  CTGTGATCCA-CTCACCAGAGGTCTTAGGGTCCCGTGGGGAGTCCTGTGT  398
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCCACCTCACCAGAGGTCTTAGGGTCCCGTGGGGAGTCCTGTGT  181

seq1  GGACCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCCTGGGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCCTGGGGC  231

seq1  TCGAGTCACGAGTCGAGCGGAAGGGCCGTATCAACGATTTTAAAGCAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTCACGAGTCGAGCGGAAGGGCCGTATCAACGATTTTAAAGCAATG  281

seq1  TTAGGATTAAGTGCAATAATTTTAACAAAGGGCCTTTATATTAATTATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATTAAGTGCAATAATTTTAACAAAGGGCCTTTATATTAATTATTC  331

seq1  AAAACTTGAATGACTCTAACAATTTAAACATTTTCAGCCCAATAGTATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGAATGACTCTAACAATTTAAACATTTTCAGCCCAATAGTATTA  381

seq1  AGAATTATTTCACAGCCGTCTTCAGAACTTTCCTTCTTACAAACTTGGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATTTCACAGCCGTCTTCAGAACTTTCCTTCTTACAAACTTGGCA  431

seq1  TTTTCTGTACCCATCCAATAGCAGCTCCTTATGTTTTGGGTAACAAACAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTACCCATCCAATAGCAGCTCCTTATGTTTTGGGTAACAAACAC  481

seq1  TCATTTTGTTTCTTGACAAATTTGCCCCATGACTAGTTTAAGTGAGCGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTTTCTTGACAAATTTGCCCCATGACTAGTTTAAGTGAGCGAA  531

seq1  ATTAAAAAGTTTCTTATATTGTTTATTTCACATCACTTAAAATATTTTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGTTTCTTATATTGTTTATTTCACATCACTTAAAATATTTTAT  581

seq1  AATTAATTCAATTATTAATGCAGCAGGTTATCTTTACATTGTATTGATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTCAATTATTAATGCAGCAGGTTATCTTTACATTGTATTGATAA  631

seq1  GTTTGACATTTAGGGAAAATTATTTAACTCTATCTCTTCTCTTATTCTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACATTTAGGGAAAATTATTTAACTCTATCTCTTCTCTTATTCTCT  681

seq1  ATGTACATCTACATTTATCTATTCATATTATTCTATGTATGTATTTATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATCTACATTTATCTATTCATATTATTCTATGTATGTATTTATGT  731

seq1  ACACATTTTGAGTAAATTATGACTTAAAAAGATCATGGTAATTACTGATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTTGAGTAAATTATGACTTAAAAAGATCATGGTAATTACTGATA  781

seq1  AGGACTGTCACAGTGAAGGCATTATCACCCAGGCATTTTTTCTTTTCCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGTCACAGTGAAGGCATTATCACCCAGGCATTTTTTCTTTTCCCT  831

seq1  TTTTCTCTTTCTTCTTTTCTTTCTTTCTTTTTTTTTAAAGAGCTTATTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTCTTCTTTTCTTTCTTTCTTTTTTTTTAAAGAGCTTATTGA  881

seq1  TGTCTTGCTGTTAAACTAGTCATAAAACTGTTTCATACCTCAAGGTCCAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCTGTTAAACTAGTCATAAAACTGTTTCATACCTCAAGGTCCAA  931

seq1  AGGCTCAAGTTCCTAAGTTGGCAGAGTTTCTTGCCAGACTTTCATCTTCG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAAGTTCCTAAGTTGGCAGAGTTTCTTGCCAGACTTTCATCTTCG  981

seq1  TTGAGCTTTTCCCAGTGGTTTCTGAAATGAGTCCCTTTGAGGATATTGTT  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTTTTCCCAGTGGTTTCTGAAATGAGTCCCTTTGAGGATATTGTT  1031

seq1  GAAAAGCTGCGTGCAGTGCTGCTCATTGAAGCTAAGAAATGATGCAGAGC  1298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTGCGTGCAGTGCTGCTCATTGAAGCTAAGAAATGATGCAGAGC  1081

seq1  TGCTCACATGAGCTGTTCTAATTGTTCCTGTAGTAGCAACTGAGGAATTC  1348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACATGAGCTGTTCTAATTGTTCCTGTAGTAGCAACTGAGGAATTC  1131


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