BAC Information

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BAC

Clone NameB6Ng01-249L08
Chromosome3 (Build37)
Map Location 72,534,116 - 72,535,212
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249L08.bB6Ng01-249L08.g
ACCGA057455GA057456
length1,114620
definitionB6Ng01-249L08.b B6Ng01-249L08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgagacgcatagtgatgtaagcccaaaatgacagaggcacaa
gcactgggcagctctgtatcatccctcctggaatattaatgcactttagc
aaaacatacccacattatgccttaggttttgtgctaatcagttcccttgg
aagtaatctttaaaagatgttacataaagtttttattgcatattatgaat
ctgtaggccagaattaggtagtaatgtggtatgaaagaatgtgaggggtt
cagaggtgcataaatccgctgttcagtaaatgcatgctcgttcccatagg
acctcctagggagcttatacagcacatttcaggactgaccagccatcagg
agcacaaaagagattacctatccccagtgtaaggatttgtgcatggagca
tatctgtaaggagctgagaaaagcaggagatgtcctcacctaatggacta
cttacctcaatggcaatgtcccagggtaatttgatgagaaagggtctacc
atgagctttagaactaactggtcactaaaatgaaaataccagcagagcaa
catgtacaagggacattccatatcaagatcttccttagtttatgaccctt
tgttaaggcaacttctgagatacttaggaatctccatagcaactagctca
gaaagtgactcaaagtgttaatcaaagtcctgtgaggatgagacgtgttg
ttaattcctatgtgtatgtgtgtttgtactgtgtataagtgtatggatta
atgcatataaacatacatatttctaaatatattaatacaaccttctctgt
ttatacaatgatcctaatttatagtacaatctcagaaaaatctaatatac
actttcgaagatatactttaatttatatattttatatatatatatattac
atacacacactatatattcttttaaaacttaaaaaaaaaatgccagggag
gtggtggtgctcgcctttaatcccagcactcggggaggcaaaggcaagtg
ggattttctgagttcaaggccagcctgtgctccacaaagtgagtttcaag
gacagccagggcttatacagaagaaaccctggtcttcaaaacctaaaaac
caaatacccaaaaa
gaattccacacccctgagccccttaacccataaaaccccctaactttcaa
gcctcgtggccgacatccgttatctcctgtgtgggatacatgttggtcct
gagctccgtaattaaatgtcctcatgtaattacaacaagatgtctgttcg
tgattcttgggtgcacgccgaatcgggaattgggtgggggtttccccact
agattctttcagagccagaagattaaaacaaattgccagagttagtttga
gatcaagcagagcaattcaggttagaagttgaggggagtcaggtttgtgg
tggatagccctggggctaattatatttgatcttaattctattctcctgtg
agggacttcaaacaatgaatgagtcagcactcaagtgatttcctgtaaac
ctgcttcacaccttaatttgtaaaataaaggagagctgataaagggaagg
tggagcagaaggttgggtgagagaaggagaaaatgggagagagagaggat
gcagaggaggaggaaaaagaaaagcagagctgaagcacatggcctggaga
aaccaaaagttctaaggggtctcatagatgtggaagatggtagtgtagtg
gtagatctgcccaatctaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72534116_72535212
seq2: B6Ng01-249L08.b_49_1162

seq1  GAATTCTTTGAGACGCATAGTGATGTAAGCCCAAAATGACAGAGGCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGACGCATAGTGATGTAAGCCCAAAATGACAGAGGCACAA  50

seq1  GCACTGGGCAGCTCTGTATCATCCCTCCTGGAATATTAATGCACTTTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGCAGCTCTGTATCATCCCTCCTGGAATATTAATGCACTTTAGC  100

seq1  AAAACATACCCACATTATGCCTTAGGTTTTGTGCTAATCAGTTCCCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATACCCACATTATGCCTTAGGTTTTGTGCTAATCAGTTCCCTTGG  150

seq1  AAGTAATCTTTAAAAGATGTTACATAAAGTTTTTATTGCATATTATGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCTTTAAAAGATGTTACATAAAGTTTTTATTGCATATTATGAAT  200

seq1  CTGTAGGCCAGAATTAGGTAGTAATGTGGTATGAAAGAATGTGAGGGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGCCAGAATTAGGTAGTAATGTGGTATGAAAGAATGTGAGGGGTT  250

seq1  CAGAGGTGCATAAATCCGCTGTTCAGTAAATGCATGCTCGTTCCCATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTGCATAAATCCGCTGTTCAGTAAATGCATGCTCGTTCCCATAGG  300

seq1  ACCTCCTAGGGAGCTTATACAGCACATTTCAGGACTGACCAGCCATCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTAGGGAGCTTATACAGCACATTTCAGGACTGACCAGCCATCAGG  350

seq1  AGCACAAAAGAGATTACCTATCCCCAGTGTAAGGATTTGTGCATGGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAAAGAGATTACCTATCCCCAGTGTAAGGATTTGTGCATGGAGCA  400

seq1  TATCTGTAAGGAGCTGAGAAAAGCAGGAGATGTCCTCACCTAATGGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTAAGGAGCTGAGAAAAGCAGGAGATGTCCTCACCTAATGGACTA  450

seq1  CTTACCTCAATGGCAATGTCCCAGGGTAATTTGATGAGAAAGGGTCTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTCAATGGCAATGTCCCAGGGTAATTTGATGAGAAAGGGTCTACC  500

seq1  ATGAGCTTTAGAACTAACTGGTCACTAAAATGAAAATACCAGCAGAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTTAGAACTAACTGGTCACTAAAATGAAAATACCAGCAGAGCAA  550

seq1  CATGTACAAGGGACATTCCATATCAAGATCTTCCTTAGTTTATGACCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACAAGGGACATTCCATATCAAGATCTTCCTTAGTTTATGACCCTT  600

seq1  TGTTAAGGCAACTTCTGAGATACTTAGGAATCTCCATAGCAACTAGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGGCAACTTCTGAGATACTTAGGAATCTCCATAGCAACTAGCTCA  650

seq1  GAAAGTGACTCAAAGTGTTAATCAAAGTCCTGTGAGGATGAGACGTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGACTCAAAGTGTTAATCAAAGTCCTGTGAGGATGAGACGTGTTG  700

seq1  TTAATTCCTATGTGTATGTGTGTTTGTACTGTGTATAAGTGTATGGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCTATGTGTATGTGTGTTTGTACTGTGTATAAGTGTATGGATTA  750

seq1  ATGCATATAAACATACATATTTCTAAATATATTAATACAACCTTCTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATAAACATACATATTTCTAAATATATTAATACAACCTTCTCTGT  800

seq1  TTATACAATGATCCTAATTTATAGTACAATCTCAGAAAAATCTAATATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAATGATCCTAATTTATAGTACAATCTCAGAAAAATCTAATATAC  850

seq1  AC-TTCGAAGATATACTTAATTATATATA---TATATATATATATA-TAC  895
      || ||||||||||||||| | | ||||||   |||||||||||||| |||
seq2  ACTTTCGAAGATATACTTTAATTTATATATTTTATATATATATATATTAC  900

seq1  ATACACACACTATATAT--CTTTAAAACTT-AAAAAAAAATGCCA-GGAG  941
      |||||||||||||||||   |||||||||| |||||||||||||| ||||
seq2  ATACACACACTATATATTCTTTTAAAACTTAAAAAAAAAATGCCAGGGAG  950

seq1  GTGGTGGTGCTCGCCTTTAATCCCAGCACTC-GGGAGGCAAAGGCAAGTG  990
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGGTGGTGCTCGCCTTTAATCCCAGCACTCGGGGAGGCAAAGGCAAGTG  1000

seq1  G--ATTTCTGAGTTCAAGGCCAGCC--TGGTCTACAAAGTGAG-TTCCAG  1035
      |   |||||||||||||||||||||  || || |||||||||| ||| ||
seq2  GGATTTTCTGAGTTCAAGGCCAGCCTGTGCTCCACAAAGTGAGTTTCAAG  1050

seq1  GACAGCCAGGGC-TATACAG-AGAAACCCT-GTCTTCAAAAACCAAAAAA  1082
      |||||||||||| ||||||| ||||||||| |||||| |||||| |||||
seq2  GACAGCCAGGGCTTATACAGAAGAAACCCTGGTCTTC-AAAACCTAAAAA  1099

seq1  CCAAAAAACCAAAAA  1097
      ||||| | |||||||
seq2  CCAAATACCCAAAAA  1114