BAC Information

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BAC

Clone NameB6Ng01-249P15
Chromosome3 (Build37)
Map Location 117,143,956 - 117,145,031
singlet/doubletsinglet
Overlap genenone
Upstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249P15.bB6Ng01-249P15.g
ACCGA057655GA057656
length1,1781,076
definitionB6Ng01-249P15.b B6Ng01-249P15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaaacaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgtaagcttgtacaaccactctggaaatcggtctggcggttcctca
gaaagttggacatagtactaccagaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcaaccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggcacatttacacaatg
gagtactactcagctcttaaaaggaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcattctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaacacataaaactcaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaattggga
acaaacacccatggaaggagttacagagacaaagtttggagctgtgacga
aaggatggactatctagagactgccatatccagggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatagagctgtctcttgtgagactatgccagggcctagcaaac
acagaagtggatgcttacagtcagctattggatggatcacagtgccccca
atggaggagctagagaaagtacccaaggagctaaagggatcttgcaatcc
tataggtggaacaacaatattgaactaccagtaccccctggagctagtgt
ctctagctgcaatagatcagaaaatgtcctagtcgccatcagtggaagag
aggctatgtccatgcaactttatatgctcagttacaggtaatgacagggc
cagatgttggagataggggtggtgggga
gaattcttacgtttttccacaagagggctcataccagaccaaagctctgc
ctgctgctagtgatctgcctacatctcttggtgaaaaccagagagacaag
aatttgaaatattccccagagcactaattagatttcaaaaatcaagtaag
cagatattttcaataactgcagttggttgataatgttaacagccaagttt
acagaagcatcctttatagcagatgatgtcatgtgtgagatggtagccat
acagctattgtcattgctgtcgttgtgaacgtgctaaactcaggtctgct
gaaggacatgactgtggagctcgattgtcagggtttgagttccaggtcgg
atgtttttattatttcggcaccatcagacaacatagtcactgttgctgtc
tcttttagccatccttagctcctcttcttgaactgtgattgttgtaagga
gtaagagaactaagccaagtaaaagcagtgagaagaaagtctgtgatgta
ttaagtgatttgtaaactttggctaccactgctactactgaggcacagag
agattaaaagacaagccccaaatcacatttgttgactgagaagagacaag
ctgtagcctgggaagtgtgttagggtatggaacaagaatacaaacatgcc
gcctctttatccttcatcctcttccagcaaaacaagatccagttcttact
gctttctgtgcctgtggactacccaaacctctaatttgatcatgcatctc
tgttttgaactcagacacaagtctacttgagagccagctccgtgtcttat
ttatgtgcataaccacatcacatagcagatgctttgccaatggtaaacaa
agatgatttggaaaaaaaaaagcagtagtgagaatacactaatttctgta
actgcatcatgcagcagcttgttactcatcttaccatgtatggaagacca
cagtttcttaagaagctcttatcaggcacaagctcagaacttaagaaaac
gccatggccttcaaagcccatgctttctgttctggttgtgtcctttgcct
gtgtgtgttgttaacttttctgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117143956_117145031
seq2: B6Ng01-249P15.g_68_1143 (reverse)

seq1  AAAACAGAAAAAAGTTAAACAACAACAACAACAAGCAAAGGAACAACAAC  50
      |||||||  |||||||    |||||||   ||| ||||||||   |||||
seq2  AAAACAG--AAAAGTT----AACAACACACACAGGCAAAGGA--CACAAC  42

seq1  AAGAACAAGAAGCATGGGCTTTGAA-GCCATGGCG-TTTCTTAAGTTCTG  98
       ||||||  |||||||||||||||| ||||||||| ||||||||||||||
seq2  CAGAACAGAAAGCATGGGCTTTGAAGGCCATGGCGTTTTCTTAAGTTCTG  92

seq1  AGCTTGTG-CTGAT-AGAGC-TCTTAAG-AACTGTGGTC-TCCATACAT-  142
      |||||||| ||||| ||||| ||||||| |||||||||| ||||||||| 
seq2  AGCTTGTGCCTGATAAGAGCTTCTTAAGAAACTGTGGTCTTCCATACATG  142

seq1  GTAAGATGAGTAACAAAGCTGCTGCATGATGCAGTTACAGAAATTAGTGT  192
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTAAGATGAGTAAC-AAGCTGCTGCATGATGCAGTTACAGAAATTAGTGT  191

seq1  ATTCTCACTACTGCTTTTTTTTTTCCAAATCATCTTTGTTTACCATTGGC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACTACTGCTTTTTTTTTTCCAAATCATCTTTGTTTACCATTGGC  241

seq1  -AAGCATCTGCTATGTGATGTGGTTATGCACATAAATAAGACACGGAGCT  291
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCTGCTATGTGATGTGGTTATGCACATAAATAAGACACGGAGCT  291

seq1  GGCTCTCAAGTAGACTTGTGTCTGAGTTCAAAACAGAGATGCATGATCAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCAAGTAGACTTGTGTCTGAGTTCAAAACAGAGATGCATGATCAA  341

seq1  ATTAGAGGTTTGGGTAGTCCACAGGCACAGAAAGCAGTAAGAACTGGATC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGGTTTGGGTAGTCCACAGGCACAGAAAGCAGTAAGAACTGGATC  391

seq1  TTGTTTTGCTGGAAGAGGATGAAGGATAAAGAGGCGGCATGTTTGTATTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCTGGAAGAGGATGAAGGATAAAGAGGCGGCATGTTTGTATTC  441

seq1  TTGTTCCATACCCTAACACACTTCCCAGGCTACAGCTTGTCTCTTCTCAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCATACCCTAACACACTTCCCAGGCTACAGCTTGTCTCTTCTCAG  491

seq1  TCAACAAATGTGATTTGGGGCTTGTCTTTTAATCTCTCTGTGCCTCAGTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAATGTGATTTGGGGCTTGTCTTTTAATCTCTCTGTGCCTCAGTA  541

seq1  GTAGCAGTGGTAGCCAAAGTTTACAAATCACTTAATACATCACAGACTTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGTGGTAGCCAAAGTTTACAAATCACTTAATACATCACAGACTTT  591

seq1  CTTCTCACTGCTTTTACTTGGCTTAGTTCTCTTACTCCTTACAACAATCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACTGCTTTTACTTGGCTTAGTTCTCTTACTCCTTACAACAATCA  641

seq1  CAGTTCAAGAAGAGGAGCTAAGGATGGCTAAAAGAGACAGCAACAGTGAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAAGAAGAGGAGCTAAGGATGGCTAAAAGAGACAGCAACAGTGAC  691

seq1  TATGTTGTCTGATGGTGCCGAAATAATAAAAACATCCGACCTGGAACTCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTCTGATGGTGCCGAAATAATAAAAACATCCGACCTGGAACTCA  741

seq1  AACCCTGACAATCGAGCTCCACAGTCATGTCCTTCAGCAGACCTGAGTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGACAATCGAGCTCCACAGTCATGTCCTTCAGCAGACCTGAGTTT  791

seq1  AGCACGTTCACAACGACAGCAATGACAATAGCTGTATGGCTACCATCTCA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTTCACAACGACAGCAATGACAATAGCTGTATGGCTACCATCTCA  841

seq1  CACATGACATCATCTGCTATAAAGGATGCTTCTGTAAACTTGGCTGTTAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACATCATCTGCTATAAAGGATGCTTCTGTAAACTTGGCTGTTAA  891

seq1  CATTATCAACCAACTGCAGTTATTGAAAATATCTGCTTACTTGATTTTTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCAACCAACTGCAGTTATTGAAAATATCTGCTTACTTGATTTTTG  941

seq1  AAATCTAATTAGTGCTCTGGGGAATATTTCAAATTCTTGTCTCTCTGGTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAATTAGTGCTCTGGGGAATATTTCAAATTCTTGTCTCTCTGGTT  991

seq1  TTCACCAAGAGATGTAGGCAGATCACTAGCAGCAGGCAGAGCTTTGGTCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAAGAGATGTAGGCAGATCACTAGCAGCAGGCAGAGCTTTGGTCT  1041

seq1  GGTATGAGCCCTCTTGTGGAAAAACGTAAGAATTC  1076
      |||||||||||||||||||||||||||||||||||
seq2  GGTATGAGCCCTCTTGTGGAAAAACGTAAGAATTC  1076