BAC Information

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BAC

Clone NameB6Ng01-251J21
Chromosome3 (Build37)
Map Location 157,772,675 - 157,904,650
singlet/doubletdoublet
Overlap geneLrrc7
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40
Downstream geneLOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251J21.bB6Ng01-251J21.g
ACCGA058827GA058828
length1,1221,166
definitionB6Ng01-251J21.b B6Ng01-251J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,772,675 - 157,773,809)(157,903,487 - 157,904,650)
sequence
gaattctccagttgactattgtttgttctagaggaagagatatatggctt
ggttttcagagttctagactcctatgtcattctaaaacattttcggtgca
aaaataatcaaaaataaaggttttctgatttaaaagcacccttaagcaat
taattccattttcctctgaggctgctttcagaaacaacagaccgactact
agaatattctttaacctgttgtcctttgggaaattggaatgtaagagcta
aagctgtgcttagttttggctattgtatgattgattatgtctttaatttt
agcaattgttccaggaatcacattgaaatttcacagacgattaactgtga
ggaacaaagggatattttctttttttttttagatttatttatttattata
tgtaagtacactgtagctgtcttcagacactccagaagagggcatcggat
cttgttacagatggtgtgagccaccatgtggttgctgggatttgaactct
gaaccttcggaagagcagtcgagtgctcttacccactaagccatctcacc
agccccaaagggatattttcaatgctgtctatttcttggtgaaatttttg
agctgaaaacagtttcctttggtattttcttgaagtcaatggtcatctcc
ttactgtctggtccagatttctggctttctagggagatgtgggcagtggg
aaaattctacttgcattattttttgagtcatgcacagctggcaatggtgg
aaatttgggcttcttagctttgcacgggttactgattctgtctaagcttc
taatggctccagaaactattaaaaccaggaggtaatgagaggtgatagtg
gattcttctctaagctcttcctaaaatagtggtggcatgtaggcttcacc
tatcactcctgcagctcccccaagccctgtcactctgctattttggatac
tactcatcattcaaatcatgagcgatgaatttagttaaacttatttttca
cttaggttaatttttggtggtgagaaatgttttctccatagctatataaa
aatctagcatatctgtagtttaatatttttttatgattgctaagcattgt
atgtcctgagatcaggtctaga

gaattcatccgattgtgtcagagatgtttcctcaagattatgggctgctt
ataatatgaacaatgcctttcatgttcatgaacttggaagaaaaaaagga
aatcaaaatacttaacattcttgaggaatctcatcttgataaaggctaac
ttgttcaccttattgaaaatataatccttgtgaaaagtctcctccttgtc
cgctgacactgtttcactgtggcacttttaaccttgtattttacttaatt
gttttgcttgctgtcattctcttccaaccacgtataaagtcttctggtga
aaaaattatcagctttatttattactgtaccctaaattagtgcataataa
cctctcaataatgttgtcatgtgaaaaacacacactgtttgagtctaact
tgtgatatattttcacttaatagtcataaaaatctaatagtttatgttaa
gaaaaagaacccaaaatttctaagattattttttctgaagtttcaaagct
tttgtgtatgctgtggttgggaataaactatttttaaatcactatatttt
attatgttgtatgtttatttgggaaggatttgagaaatgtgtaccatact
aggggtgttctaaaatgcctttgaaaccaattcttagtccagagtcttaa
aatagctcagcactcttacagccccaactcaggatatttcggaatgaaga
tattctatctgtaacagaagctcctgtaatgagcagaaataacaaagctg
atgatgcagccatgggtagaaggacttcctttactatgattgacttgtga
ttaatgaatcagggcagtgactcttaaaaatatggtaactcttaaaaata
tgatagtgaatccatcctaagctttctagtatagatacttaatgagactc
ccggtgtgtgaaacagctgacccttaactcccatcacacactgcattggt
ggcccagtgctgtggacacagtctgctagaactgtacccagatggctgtt
cacatgtttctctgtgcatctgtgttcatcccttgctaaggagtatcctt
gagttttgcctttattttgtacgtggatatggttcagggaaatctcatca
aggtgtgggcgatactatctttacgagagaatgtcatgtgtcgctcacta
atggtactcttctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157772675_157773809
seq2: B6Ng01-251J21.b_48_1169

seq1  GAATTCTCCAGTTGACTATTGTTTGTTCTAGAGGAAGAGATATATGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGTTGACTATTGTTTGTTCTAGAGGAAGAGATATATGGCTT  50

seq1  GGTTTTCAGAGTTCTAGACTCCTATGTCATTCTAAAACATTTTCGGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAGAGTTCTAGACTCCTATGTCATTCTAAAACATTTTCGGTGCA  100

seq1  AAAATAATCAAAAATAAAGGTTTTCTGATTTAAAAGCACCCTTAAGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATCAAAAATAAAGGTTTTCTGATTTAAAAGCACCCTTAAGCAAT  150

seq1  TAATTCCATTTTCCTCTGAGGCTGCTTTCAGAAACAACAGACCGACTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCATTTTCCTCTGAGGCTGCTTTCAGAAACAACAGACCGACTACT  200

seq1  AGAATATTCTTTAACCTGTTGTCCTTTGGGAAATTGGAATGTAAGAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTCTTTAACCTGTTGTCCTTTGGGAAATTGGAATGTAAGAGCTA  250

seq1  AAGCTGTGCTTAGTTTTGGCTATTGTATGATTGATTATGTCTTTAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGCTTAGTTTTGGCTATTGTATGATTGATTATGTCTTTAATTTT  300

seq1  AGCAATTGTTCCAGGAATCACATTGAAATTTCACAGACGATTAACTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTGTTCCAGGAATCACATTGAAATTTCACAGACGATTAACTGTGA  350

seq1  GGAACAAAGGGATATTTTCTTTTTTTTTTTAGATTTATTTATTTATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAGGGATATTTTCTTTTTTTTTTTAGATTTATTTATTTATTATA  400

seq1  TGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCGGAT  450

seq1  CTTGTTACAGATGGTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTACAGATGGTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCT  500

seq1  GAACCTTCGGAAGAGCAGTCGAGTGCTCTTACCCACTAAGCCATCTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTCGGAAGAGCAGTCGAGTGCTCTTACCCACTAAGCCATCTCACC  550

seq1  AGCCCCAAAGGGATATTTTCAATGCTGTCTATTTCTTGGTGAAATTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAAAGGGATATTTTCAATGCTGTCTATTTCTTGGTGAAATTTTTG  600

seq1  AGCTGAAAACAGTTTCCTTTGGTATTTTCTTGAAGTCAATGGTCATCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAACAGTTTCCTTTGGTATTTTCTTGAAGTCAATGGTCATCTCC  650

seq1  TTACTGTCTGGTCCAGATTTCTGGCTTTCTAGGGAGATGTGGGCAGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCTGGTCCAGATTTCTGGCTTTCTAGGGAGATGTGGGCAGTGGG  700

seq1  AAAATTCTACTTGCATTATTTTTTGAGTCATGCACAGCTGGCAATGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTACTTGCATTATTTTTTGAGTCATGCACAGCTGGCAATGGTGG  750

seq1  AAATTTGGGCTTCTTAGCTTTGCACGGGTTACTGATTCTGTCTAAGCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGGCTTCTTAGCTTTGCACGGGTTACTGATTCTGTCTAAGCTTC  800

seq1  TAATGGCTCCAGAAACTATTAAAACCAGGAGGTAATGAGAGGTGATAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCTCCAGAAACTATTAAAACCAGGAGGTAATGAGAGGTGATAGTG  850

seq1  GATTCTTCTCTAAGCTCTTCCTAAAATAGTGGTGGCATGTAGGCTTCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTCTCTAAGCTCTTCCTAAAATAGTGGTGGCATGTAGGCTTCACC  900

seq1  TATCACTCCTGCAGGCTCCCCCAAGCCCTGTCACTCTGCTATTTTTGGAT  950
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  TATCACTCCTGCA-GCTCCCCCAAGCCCTGTCACTCTGCTA-TTTTGGAT  948

seq1  ACTACTCATCATTTCAAAATCATGAGCGATGAATTTAGTTAAACTTATTT  1000
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  ACTACTCATCATT--CAAATCATGAGCGATGAATTTAGTTAAACTTATTT  996

seq1  TTCACTTAGGTTAAATTTTTGGTGGTGAGAAAATGTTTCTCATAAGCTAT  1050
      |||||||||||| |||||||||||||||||||   ||||||   ||||||
seq2  TTCACTTAGGTT-AATTTTTGGTGGTGAGAAATGTTTTCTCCATAGCTAT  1045

seq1  ATAAAAATCTAGCCATAATTCTTGTAGGTTTAATATTTTTTTATTTAATT  1100
      |||||||||||| ||||  || |||| ||||||||||||||||  | |||
seq2  ATAAAAATCTAG-CATA--TC-TGTA-GTTTAATATTTTTTTA--TGATT  1088

seq1  GCTTAAGCATTGTTATGTCCTGAGATCA-GTCTAGA  1135
      || ||||||||| ||||||||||||||| |||||||
seq2  GC-TAAGCATTG-TATGTCCTGAGATCAGGTCTAGA  1122


seq1: chr3_157903487_157904650
seq2: B6Ng01-251J21.g_67_1232 (reverse)

seq1  TGGAGAAGAGTACCATGA-TGAGGCAGCACTTGACATATCTCT-GTAAAG  48
      |||||||||||||||| | ||| ||  ||| |||||| ||||| ||||||
seq2  TGGAGAAGAGTACCATTAGTGA-GCGACACATGACAT-TCTCTCGTAAAG  48

seq1  ATAGTCT-GCCCACA-CTTGAT-AGATTTTCCTG-ACCATAT-CACGTAC  93
      ||||| | ||||||| |||||| |||||| |||| ||||||| |||||||
seq2  ATAGTATCGCCCACACCTTGATGAGATTTCCCTGAACCATATCCACGTAC  98

seq1  AAAAATAAAAGCAAAAACTTCAGGATACTCCTTAGCAAGGGATGAAACAC  143
       |||||||| || ||||||  ||||||||||||||||||||||| |||||
seq2  -AAAATAAAGGC-AAAACTCAAGGATACTCCTTAGCAAGGGATG-AACAC  145

seq1  AGATGCACAGAGAAACATGTGAACAGCCATCTGGGTACAGTTCTAGCAGA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACAGAGAAACATGTGAACAGCCATCTGGGTACAGTTCTAGCAGA  195

seq1  CTGTGGTCCACAGCACTGGGCCACCAATGCAGTGTGTGATGGGAGTT-AG  242
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGT-GTCCACAGCACTGGGCCACCAATGCAGTGTGTGATGGGAGTTAAG  244

seq1  GGTCAGCTGTTTCACACACCGGGAGTCTCATTAAGTATCTATACTAGAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCTGTTTCACACACCGGGAGTCTCATTAAGTATCTATACTAGAAA  294

seq1  GCTTAGGATGGATTCACTATCATATTTTTAAGAGTTACCATATTTTTAAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGATGGATTCACTATCATATTTTTAAGAGTTACCATATTTTTAAG  344

seq1  AGTCACTGCCCTGATTCATTAATCACAAGTCAATCATAGTAAAGGAAGTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGCCCTGATTCATTAATCACAAGTCAATCATAGTAAAGGAAGTC  394

seq1  CTTCTACCCATGGCTGCATCATCAGCTTTGTTATTTCTGCTCATTACAGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCCATGGCTGCATCATCAGCTTTGTTATTTCTGCTCATTACAGG  444

seq1  AGCTTCTGTTACAGATAGAATATCTTCATTCCGAAATATCCTGAGTTGGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGTTACAGATAGAATATCTTCATTCCGAAATATCCTGAGTTGGG  494

seq1  GCTGTAAGAGTGCTGAGCTATTTTAAGACTCTGGACTAAGAATTGGTTTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAGAGTGCTGAGCTATTTTAAGACTCTGGACTAAGAATTGGTTTC  544

seq1  AAAGGCATTTTAGAACACCCCTAGTATGGTACACATTTCTCAAATCCTTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATTTTAGAACACCCCTAGTATGGTACACATTTCTCAAATCCTTC  594

seq1  CCAAATAAACATACAACATAATAAAATATAGTGATTTAAAAATAGTTTAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAAACATACAACATAATAAAATATAGTGATTTAAAAATAGTTTAT  644

seq1  TCCCAACCACAGCATACACAAAAGCTTTGAAACTTCAGAAAAAATAATCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACCACAGCATACACAAAAGCTTTGAAACTTCAGAAAAAATAATCT  694

seq1  TAGAAATTTTGGGTTCTTTTTCTTAACATAAACTATTAGATTTTTATGAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTTGGGTTCTTTTTCTTAACATAAACTATTAGATTTTTATGAC  744

seq1  TATTAAGTGAAAATATATCACAAGTTAGACTCAAACAGTGTGTGTTTTTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTGAAAATATATCACAAGTTAGACTCAAACAGTGTGTGTTTTTC  794

seq1  ACATGACAACATTATTGAGAGGTTATTATGCACTAATTTAGGGTACAGTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAACATTATTGAGAGGTTATTATGCACTAATTTAGGGTACAGTA  844

seq1  ATAAATAAAGCTGATAATTTTTTCACCAGAAGACTTTATACGTGGTTGGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAGCTGATAATTTTTTCACCAGAAGACTTTATACGTGGTTGGA  894

seq1  AGAGAATGACAGCAAGCAAAACAATTAAGTAAAATACAAGGTTAAAAGTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGACAGCAAGCAAAACAATTAAGTAAAATACAAGGTTAAAAGTG  944

seq1  CCACAGTGAAACAGTGTCAGCGGACAAGGAGGAGACTTTTCACAAGGATT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGAAACAGTGTCAGCGGACAAGGAGGAGACTTTTCACAAGGATT  994

seq1  ATATTTTCAATAAGGTGAACAAGTTAGCCTTTATCAAGATGAGATTCCTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCAATAAGGTGAACAAGTTAGCCTTTATCAAGATGAGATTCCTC  1044

seq1  AAGAATGTTAAGTATTTTGATTTCCTTTTTTTCTTCCAAGTTCATGAACA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTTAAGTATTTTGATTTCCTTTTTTTCTTCCAAGTTCATGAACA  1094

seq1  TGAAAGGCATTGTTCATATTATAAGCAGCCCATAATCTTGAGGAAACATC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCATTGTTCATATTATAAGCAGCCCATAATCTTGAGGAAACATC  1144

seq1  TCTGACACAATCGGATGAATTC  1164
      ||||||||||||||||||||||
seq2  TCTGACACAATCGGATGAATTC  1166


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