BAC Information

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BAC

Clone NameB6Ng01-252B15
Chromosome12 (Build37)3 (Build37)
Map Location 60,080,381 - 60,081,24349,989,675 - 49,990,351
singlet/doubletsingletsinglet
Overlap geneSec23a
Upstream geneSstr1, Clec14a, LOC100040183
Downstream geneSip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252B15.bB6Ng01-252B15.g
ACCGA059189GA059190
length8641,005
definitionB6Ng01-252B15.b B6Ng01-252B15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,080,381 - 60,081,243)(49,989,675 - 49,990,351)
sequence
gaattctcttcctgaatgaacctggagctcactgtttgcctaccggattg
ctgcctgcctgtggtttcctagcaatattgcaggcatgcccctgcatcag
cttcttacattaagaattatatcatatccatagatgtgtaggtatctctc
ctaggaagctgactttgactctttgagaatggtatagttggattatatgg
aagtttaaaaaatacttttatttttgaattttgtatgggggtctgtggag
tacttttttgagtacgggtatctgtggaggtaggaggagggcatcgcaac
aggggctggacttacaggcaactgggagctccttgatgtggcttctggga
gccgaattacgacctctggaagagcagccaggttcttaaattgatgagcc
atctctctagccctaaaagttctagttgtaattttttgaggaaccttaaa
acctactgtgttccctgatcttacagacaggatctcctatagtccaggct
ggcctcaaatttgctgcgtagttgagcctggtttgaactcccgatctttt
gtctccaactcccaagtaatgggattataggcttatattcccatactaaa
ttctcttacttaattttgattcttcttggtcagtgtattaccatggagaa
aagtacagcagttttaatttatgtgatttctatcattgacatttattgat
ttctatctaaagactaatgagaataaaattctgatgttttgtcctttcag
tgtaacaaatgacactaagattgaaaataaaacctttacttttgtaaatt
cattttttgtgttttgtaaattgaatacattaaaattcatcatagagggg
gctggagagattgc
gaattccttagtagaaattctcaggtggccctaacggttttttcattttg
acagttgaagctaactaggatggagggttacaaaagtgcataaggtattg
caatggttaacattgcatgtcacttggactgggctatgatacctggttat
ttggccaaacgttgttctaaatgcttatatgaaggcattttagatgagat
taacatttaaaacagtttttccaagggtgtgtgtgtgtgtggcatttgag
tgtgtagcatatgtacatatatatatatatatatatatatatatatatat
atatatatacatggacaggtgattttggaaaactaaaacatggattttat
tatgctatataacataatatataaactgtcctaaaatatttgagatactt
gggatttttaattctatccaaatcattatgtctaactatagtaactctat
aaatgttgaaaatgtcaactcagtttaatgtgacaaaatgacacttcgtt
agaatctgctctaacaaggattctaccttctttgatttattgccacagct
gaacacagagatcatttatttttatattcccttttcctggcaatagcata
ggaagctagccggccaagtgtgataactaaagcatgtgcctgttgtatta
atattttcatgattagctgtttggagatttatgggtatgttgtaaggaac
tcagaatgaaagtagagacagatacactccagatagggtcaggtgccatg
tgcttttgtaaatatgaataagttgtgttctttgccaaaattttttatta
caactataatagtcacatcccattgctcaaggataatgcaaggaaaagac
aaatatgattggtttatacaaagacatccctaacagtactgttatgagac
aatagtgttcatttatgctctgatttatgaatagattttttgggtaacat
gagcaaataagaaaacatttagtaatttgtcttaaatacgtttccgtttc
ttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_60080381_60081243
seq2: B6Ng01-252B15.b_42_905 (reverse)

seq1  GCAATCTCTCCAGCCCCCTCTATGATGAATTTTAATGTATTCAATTTTAG  50
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  GCAATCTCTCCAGCCCCCTCTATGATGAATTTTAATGTATTCAATTTACA  50

seq1  AAAAACAAAAAATGAATTTACAAAAGTAAAGGTTTTATTTTCAATCTTAG  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAAAAATGAATTTACAAAAGTAAAGGTTTTATTTTCAATCTTAG  100

seq1  TGTCATTTGTTACACTG-AAGGACAAAACATCAGAATTTTATTCTCATTA  149
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTCATTTGTTACACTGAAAGGACAAAACATCAGAATTTTATTCTCATTA  150

seq1  GTCTTTAGATAGAAATCAATAAATGTCAATGATAGAAATCACATAAATTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAGATAGAAATCAATAAATGTCAATGATAGAAATCACATAAATTA  200

seq1  AAACTGCTGTACTTTTCTCCATGTTAATACACTGACCAAGACGAATCAAA  249
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  AAACTGCTGTACTTTTCTCCATGGTAATACACTGACCAAGAAGAATCAAA  250

seq1  ATTAAGTAAGAGAATTTAGTATGGGAATATAAGCCTATAATCCCATTACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTAAGAGAATTTAGTATGGGAATATAAGCCTATAATCCCATTACT  300

seq1  TGGGAGTTGGAGACAAAAGATCGGGAGTTCAAACCAGGCTCAACTACGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTGGAGACAAAAGATCGGGAGTTCAAACCAGGCTCAACTACGCA  350

seq1  GCAAATTTGAGGCCAGCCTGGACTCTAGGAGATCCTGTCTCTAAGATCAT  399
      |||||||||||||||||||||||| ||||||||||||||| |||||||| 
seq2  GCAAATTTGAGGCCAGCCTGGACTATAGGAGATCCTGTCTGTAAGATCAG  400

seq1  GGAACACAGTAGGTTTTAAGGTTCCTCAAAAAATTAAAACTAGAACTTCT  449
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  GGAACACAGTAGGTTTTAAGGTTCCTCAAAAAATTACAACTAGAACTTTT  450

seq1  AGGGCTAGAGAGATGGCTCATCAATTTAAGAACCTGGCTGCTCTTCCAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAGAGAGATGGCTCATCAATTTAAGAACCTGGCTGCTCTTCCAGA  500

seq1  GGTCCTAATTCGGCTCCCAGAAGCCACATCAAGGAGCTCCCAGTTGCCTG  549
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTAATTCGGCTCCCAGAAGCCACATCAAGGAGCTCCCAGTTGCCTG  550

seq1  TAAGTCCAGCCCCTGCTGCGATGCCCTCCTCCTACCTCCACAGATACCTG  599
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  TAAGTCCAGCCCCTGTTGCGATGCCCTCCTCCTACCTCCACAGATACCCG  600

seq1  TACTCAAAATTGTACTCCACAGACCCCCATACAAAATTCAAAAATAAAAG  649
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAAAAAGTACTCCACAGACCCCCATACAAAATTCAAAAATAAAAG  650

seq1  TATTTTTTAAACTTCCATATAATCCAACTATACCATTCTCAAAGAGTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAAACTTCCATATAATCCAACTATACCATTCTCAAAGAGTCAA  700

seq1  AGTCAGCTTCCTAGGAGAGATACCTACACATCTATGGATATGATATAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCTTCCTAGGAGAGATACCTACACATCTATGGATATGATATAATT  750

seq1  CTTAATGTAAGAAGCTGATGCAGGGGCATGCCTGCAATATTGCTAGGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTAAGAAGCTGATGCAGGGGCATGCCTGCAATATTGCTAGGAAA  800

seq1  CCACAGGCAGGCAGCAATCCGGTAGGCAAACAGTGAGCTCCAGGTTCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCAGGCAGCAATCCGGTAGGCAAACAGTGAGCTCCAGGTTCATT  850

seq1  CAGGAAGAGAATTC  863
      ||||||||||||||
seq2  CAGGAAGAGAATTC  864

seq1: chr3_49989675_49990351
seq2: B6Ng01-252B15.g_389_1072 (reverse)

seq1  TGTAAG-AACGGAAACGTTATTAAGAC-AATTACTAAATG-TTTCTTATT  47
      |||||| |||||||||||  ||||||| |||||||||||| |||||||||
seq2  TGTAAGAAACGGAAACGTATTTAAGACAAATTACTAAATGTTTTCTTATT  50

seq1  TGCTCATGTTACCC-AAAAATCTATTCATAAAACAGAGCATAAATGAACA  96
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  TGCTCATGTTACCCAAAAAATCTATTCATAAATCAGAGCATAAATGAACA  100

seq1  CTATTGTCTCATAACAGTACTGTTAGGGATGTCTTTGTATAAACCAATCA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTCTCATAACAGTACTGTTAGGGATGTCTTTGTATAAACCAATCA  150

seq1  TATTTGTC-TTTCCTTGCATTATCCTTGAGCAATGGGATGTGACTATTTA  195
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  TATTTGTCTTTTCCTTGCATTATCCTTGAGCAATGGGATGTGACTA-TTA  199

seq1  TAGTTGTAAT-AAAAATTTTGGCAAAGAACACAACTTATTCATATTTAC-  243
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  TAGTTGTAATAAAAAATTTTGGCAAAGAACACAACTTATTCATATTTACA  249

seq1  AAAGCACATGGCACCTGACCCTATCTGGAGTGTATCTGTCTCTAC-TTCA  292
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAGCACATGGCACCTGACCCTATCTGGAGTGTATCTGTCTCTACTTTCA  299

seq1  TTCTGAGTTCCTTACAACATACCCATAAATCTCCAAACAGCTAATCATGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCCTTACAACATACCCATAAATCTCCAAACAGCTAATCATGA  349

seq1  AAATATTAATACAACAGGCACATGCTTTAGTTATCACACTTGGCCGGCTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAATACAACAGGCACATGCTTTAGTTATCACACTTGGCCGGCTA  399

seq1  GCTTCCTATGCTATTGCCAGGAAAAGGGAATATAAAAATAAATGATCTCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTATGCTATTGCCAGGAAAAGGGAATATAAAAATAAATGATCTCT  449

seq1  GTGTTCAGCTGTGGCAATAAATCAAAGAAGGTAGAATCCTTGTTAGAGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGCTGTGGCAATAAATCAAAGAAGGTAGAATCCTTGTTAGAGCA  499

seq1  GATTCTAACGAAGTGTCATTTTGTCACATTAAACTGAGTTGACATTTTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAACGAAGTGTCATTTTGTCACATTAAACTGAGTTGACATTTTCA  549

seq1  ACATTTATAGAGTTACTATAGTTAGACATAATGATCTGGATAGAATTAAA  592
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACATTTATAGAGTTACTATAGTTAGACATAATGATTTGGATAGAATTAAA  599

seq1  AATCCCAAGTATCTCAAATATTTTAGGACAGTTTATATATTATGTTATAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAAGTATCTCAAATATTTTAGGACAGTTTATATATTATGTTATAT  649

seq1  AGCATAATAAAATCCATGTTTTAGTTTTCCAAAAT  677
      |||||||||||||||||||||||||||||||||||
seq2  AGCATAATAAAATCCATGTTTTAGTTTTCCAAAAT  684