BAC Information

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BAC

Clone NameB6Ng01-252H13
Chromosome3 (Build37)
Map Location 21,168,765 - 21,338,727
singlet/doubletdoublet
Overlap genenone
Upstream geneCpb1, Agtr1b, EG665094
Downstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252H13.bB6Ng01-252H13.g
ACCGA059458GA059459
length1,0781,177
definitionB6Ng01-252H13.b B6Ng01-252H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,337,648 - 21,338,727)(21,168,765 - 21,169,959)
sequence
gaattcagtctactcttcaactcatgtaacttgcttcccagggtctggga
aaaacctttattgtgcaggccatggtgtgttttggtgtgtatgtgtgtgt
gttcattttcctagtctgaggttcttggacagcagatatcatatattttt
ctctgtatccagcctccttaacctgtgggatcttaatctagaaatcgtta
ggatacagagcagtatggtcagtaaatccctaaatcagtgagtgtttatt
ctgtgcaactattttcctcatttgtatgatttcactatagttacaaccag
taaactccagcaaagaggttaacttcttgtaggttagtgaacccactcag
aaaatagacccttctagactagtaaacctacatagaaagtagatccttag
gttactgaacccccacaaagagtagactcctgtaggttagtgaacccaca
gagtagaccactgtaggatagtgaacacttacagagaggaatccccacta
gactagtgaacccacaccaagaatggactcctagacattagtgacttcat
acaggaagtagagttttgttacaacttcaactatcaccatgacaaaagcc
tagagtaacttagggaaagggcacttcaactgaagaactgtccagatgag
acctgccacacctccgagcattttcttcatttctagttgatgcagaagag
acaaacccactgcaggcaggtcgacctagtagctgaacagcctttctctg
tactcctgcttccaattttatgccttgatttttctgttctagcttccctc
aatcatgagctataacctatacgttaaacaaatccttttttctttcaagt
tgttcttgggtcgtgctggttgtcttagcaattgaaagcaaactagaaca
accctgtagtttactgaccttacacaggagtcccacaggctagcactcac
agaaagtattcctctgcaggctagttcacccacatacaatagactttgtc
ataggccccactttcagctctctctgtccacctccagttacactgtgctg
tgaaaacagcatcaagcaatgaggagac

gaattcatagtagttctccagtcacaggctactaagtgttgaaactgcac
aacttcaacaatattaatttgtattaaataacatccaattttcttctaat
tggtgttccagcagtatgcttgaacttcaaagaaaatagacacgtaaaaa
gtaaaacaaaatttccacgtgataattcagattaattattaaaataatct
caaggaatttgttgattaagtcatctcactcaataggaagtgtgcaaact
ttcactttgaaaataattgaacatttaaattattcagatgtgctatcaca
agttgtatgtgtgtgtctgtgtgtgtgtatacatgtgcatgctaatgtgt
tttttaaagatgaacatgtgtacatgtgtatgtgtatggacatcagaggt
tggttcccagtgtcttcttcagtctctctatatatcttgctttttatagt
agggtctctcactgaaagtagctcactaatttggctaaattgactcctgt
ctcagcctccccagtgctaggattacaagtgttcaactccattctctagt
tttgacatgactagtttggattgaactcaggtcgtcatgctttctcagaa
actattctacttacacccaagacgtttatagtatatgatttgggtcactt
atggtgttacattcacaaataaaataagtcttgaagggcatagagcctac
ctgaatgccaactgaattaattcagtggctgctctatcacagtaacagaa
tgcccatagcaaatgtgggctttccacgcactgttttcaggtctgtagaa
gaggatttgagagaaaatcataggggtacactaaagaaactttccagaga
gaatcacaatagttctgagggtcccgtggatgaataaatcatttctcatg
tgtgttggtgtgtaattaacacaaattttgccctgatttttgaccccaaa
gtctcagaagtttgtgagaatatagagaaaaattaaaagaaaagcatttt
tcctgaattaattttattatgaaaatgtggcacaaatctttgaaacaata
tctttctaggagcttcagaagttttgaataatcaggaactctacacaata
cagaatggtggttcggttattcaatccgcttctgcccatctaacgctgca
gttcctggttcttgaatgaaagaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_21337648_21338727
seq2: B6Ng01-252H13.b_45_1122 (reverse)

seq1  GTCTCCTCACTGCTGGATGCTTGTTCTCACAGCACAGTGTAAACTGGGGG  50
      ||||||||| |||| ||||| |||| |||||||||||||| |||||| ||
seq2  GTCTCCTCATTGCTTGATGC-TGTTTTCACAGCACAGTGT-AACTGGAGG  48

seq1  T-GACAGAGAGAGCTGAAAGTGGGGCTATTGACAAAGGTCTATTTGTATG  99
      | ||||||||||||||||||||||||   ||||||| ||||| |||||||
seq2  TGGACAGAGAGAGCTGAAAGTGGGGCCTATGACAAA-GTCTA-TTGTATG  96

seq1  TGGGTGAACTAGCCTGCAGAGGAATACTTTCTGTGAGTGCTAGCCTGTGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAACTAGCCTGCAGAGGAATACTTTCTGTGAGTGCTAGCCTGTGG  146

seq1  GACTCCTGTGTAAGGTCAGTAAACTACAGGGTTGTTCTAGTTTGCTTTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGTGTAAGGTCAGTAAACTACAGGGTTGTTCTAGTTTGCTTTCA  196

seq1  ATTGCTAAGACAACCAGCACGA-CCAAGAACAACTTGAAAGAAAAAAGGA  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTGCTAAGACAACCAGCACGACCCAAGAACAACTTGAAAGAAAAAAGGA  246

seq1  TTTGTTTAACGTATAGGTTATAGCTCATGATTGAGGGAAGCTAGAACAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAACGTATAGGTTATAGCTCATGATTGAGGGAAGCTAGAACAGA  296

seq1  AAAATCAAGGCATAAAATTGGAAGCAGGAGTACAGAGAAAGGCTGTTCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAGGCATAAAATTGGAAGCAGGAGTACAGAGAAAGGCTGTTCAG  346

seq1  CTACTAGGTCGACCTGCCTGCAGTGGGTTTGTCTCTTCTGCATCAACTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGGTCGACCTGCCTGCAGTGGGTTTGTCTCTTCTGCATCAACTAG  396

seq1  AAATGAAGAAAATGCTCGGAGGTGTGGCAGGTCTCATCTGGACAGTTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGAAAATGCTCGGAGGTGTGGCAGGTCTCATCTGGACAGTTCTT  446

seq1  CAGTTGAAGTGCCCTTTCCCTAAGTTACTCTAGGCTTTTGTCATGGTGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAGTGCCCTTTCCCTAAGTTACTCTAGGCTTTTGTCATGGTGAT  496

seq1  AGTTGAAGTTGTAACAAAACTCTACTTCCTGTATGAAGTCACTAATGTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGTTGTAACAAAACTCTACTTCCTGTATGAAGTCACTAATGTCT  546

seq1  AGGAGTCCATTCTTGGTGTGGGTTCACTAGTCTAGTGGGGATTCCTCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCCATTCTTGGTGTGGGTTCACTAGTCTAGTGGGGATTCCTCTCT  596

seq1  GTAAGTGTTCACTATCCTACAGTGGTCTACTCTGTGGGTTCACTAACCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGTTCACTATCCTACAGTGGTCTACTCTGTGGGTTCACTAACCTA  646

seq1  CAGGAGTCTACTCTTTGTGGGGGTTCAGTAACCTAAGGATCTACTTTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCTACTCTTTGTGGGGGTTCAGTAACCTAAGGATCTACTTTCTA  696

seq1  TGTAGGTTTACTAGTCTAGAAGGGTCTATTTTCTGAGTGGGTTCACTAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTTACTAGTCTAGAAGGGTCTATTTTCTGAGTGGGTTCACTAAC  746

seq1  CTACAAGAAGTTAACCTCTTTGCTGGAGTTTACTGGTTGTAACTATAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGAAGTTAACCTCTTTGCTGGAGTTTACTGGTTGTAACTATAGTG  796

seq1  AAATCATACAAATGAGGAAAATAGTTGCACAGAATAAACACTCACTGATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATACAAATGAGGAAAATAGTTGCACAGAATAAACACTCACTGATT  846

seq1  TAGGGATTTACTGACCATACTGCTCTGTATCCTAACGATTTCTAGATTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATTTACTGACCATACTGCTCTGTATCCTAACGATTTCTAGATTAA  896

seq1  GATCCCACAGGTTAAGGAGGCTGGATACAGAGAAAAATATATGATATCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCACAGGTTAAGGAGGCTGGATACAGAGAAAAATATATGATATCTG  946

seq1  CTGTCCAAGAACCTCAGACTAGGAAAATGAACACACACACATACACACCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAAGAACCTCAGACTAGGAAAATGAACACACACACATACACACCA  996

seq1  AAACACACCATGGCCTGCACAATAAAGGTTTTTCCCAGACCCTGGGAAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACCATGGCCTGCACAATAAAGGTTTTTCCCAGACCCTGGGAAGC  1046

seq1  AAGTTACATGAGTTGAAGAGTAGACTGAATTC  1080
      ||||||||||||||||||||||||||||||||
seq2  AAGTTACATGAGTTGAAGAGTAGACTGAATTC  1078


seq1: chr3_21168765_21169959
seq2: B6Ng01-252H13.g_71_1247

seq1  GAATTCATAGTAGTTCTCCAGTCACAGGCTACTAAGTGTTGAAACTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTAGTTCTCCAGTCACAGGCTACTAAGTGTTGAAACTGCAC  50

seq1  AACTTCAACAATATTAATTTGTATTAAATAACATCCAATTTTCTTCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAACAATATTAATTTGTATTAAATAACATCCAATTTTCTTCTAAT  100

seq1  TGGTGTTCCAGCAGTATGCTTGAACTTCAAAGAAAATAGACACGTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCCAGCAGTATGCTTGAACTTCAAAGAAAATAGACACGTAAAAA  150

seq1  GTAAAACAAAATTTCCACGTGATAATTCAGATTAATTATTAAAATAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACAAAATTTCCACGTGATAATTCAGATTAATTATTAAAATAATCT  200

seq1  CAAGGAATTTGTTGATTAAGTCATCTCACTCAATAGGAAGTGTGCAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATTTGTTGATTAAGTCATCTCACTCAATAGGAAGTGTGCAAACT  250

seq1  TTCACTTTGAAAATAATTGAACATTTAAATTATTCAGATGTGCTATCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTGAAAATAATTGAACATTTAAATTATTCAGATGTGCTATCACA  300

seq1  AGTTGTATGTGTGTGTCTGTGTGTGTGTATACATGTGCATGCTAATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATGTGTGTGTCTGTGTGTGTGTATACATGTGCATGCTAATGTGT  350

seq1  TTTTTAAAGATGAACATGTGTACATGTGTATGTGTATGGACATCAGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGATGAACATGTGTACATGTGTATGTGTATGGACATCAGAGGT  400

seq1  TGGTTCCCAGTGTCTTCTTCAGTCTCTCTATATATCTTGCTTTTTATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCCAGTGTCTTCTTCAGTCTCTCTATATATCTTGCTTTTTATAGT  450

seq1  AGGGTCTCTCACTGAAAGTAGCTCACTAATTTGGCTAAATTGACTCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCTCACTGAAAGTAGCTCACTAATTTGGCTAAATTGACTCCTGT  500

seq1  CTCAGCCTCCCCAGTGCTAGGATTACAAGTGTTCAACTCCATTCTCTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTCCCCAGTGCTAGGATTACAAGTGTTCAACTCCATTCTCTAGT  550

seq1  TTTGACATGACTAGTTTGGATTGAACTCAGGTCGTCATGCTTTCTCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATGACTAGTTTGGATTGAACTCAGGTCGTCATGCTTTCTCAGAA  600

seq1  ACTATTCTACTTACACCCAAGACGTTTATAGTATATGATTTGGGTCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTACTTACACCCAAGACGTTTATAGTATATGATTTGGGTCACTT  650

seq1  ATGGTGTTACATTCACAAATAAAATAAGTCTTGAAGGGCATAGAGCCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTTACATTCACAAATAAAATAAGTCTTGAAGGGCATAGAGCCTAC  700

seq1  CTGAATGCCAACTGAATTAATTCAGTGGCTGCTCTATCACAGTAACAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGCCAACTGAATTAATTCAGTGGCTGCTCTATCACAGTAACAGAA  750

seq1  TGCCCATAGCAAATGTGGGCTTTCCACGCACTGTTTTCAGGTCTGTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATAGCAAATGTGGGCTTTCCACGCACTGTTTTCAGGTCTGTAGAA  800

seq1  GAGGATTTGAGAGAAAATCATAGGGGTACACTAAAGAAACTTTCCAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTGAGAGAAAATCATAGGGGTACACTAAAGAAACTTTCCAGAGA  850

seq1  GAATCACAATAGTTCTGAGGGTCCCGTGGATGAATAAAATCATTTCTCAT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAATCACAATAGTTCTGAGGGTCCCGTGGATGAAT-AAATCATTTCTCAT  899

seq1  GTGTGTTGGTGTGTAATTAACACAAATTTTGCCCTGATTTTTGACCCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGGTGTGTAATTAACACAAATTTTGCCCTGATTTTTGACCCCAA  949

seq1  AGTCTCAGAAGTTTGTGAGAATATAGAG-AATATTTACAGAAAAGCATTT  999
      |||||||||||||||||||||||||||| || ||| | ||||||||||||
seq2  AGTCTCAGAAGTTTGTGAGAATATAGAGAAAAATTAAAAGAAAAGCATTT  999

seq1  TTCCTGAA-TAATTTTATTATGAAAATGTGGCACAAATCTTTGAAACAAT  1048
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAATTAATTTTATTATGAAAATGTGGCACAAATCTTTGAAACAAT  1049

seq1  AATTCTTTCTAGGAAGCTTCAAGAAGTTTTTTGAATAATCAAGGGACTCT  1098
      |  |||||||||| |||||| |||||  |||||||||||| ||| |||||
seq2  A--TCTTTCTAGG-AGCTTC-AGAAG--TTTTGAATAATC-AGGAACTCT  1092

seq1  ACACAATACACATATGGTGGTGTCCGTGTAATTCCATCCCGCTTCTGCCC  1148
      |||||||||| | |||||||| ||   || |||| || ||||||||||||
seq2  ACACAATACAGA-ATGGTGGT-TC--GGTTATTCAAT-CCGCTTCTGCCC  1137

seq1  ACTCTCAAACAGCTGCAGTTCCCCTGTGTCTTGAATGAAGAGAATTG  1195
      |   || ||| |||||||||  ||||  ||||||||||| |||||||
seq2  A---TCTAAC-GCTGCAGTT--CCTGGTTCTTGAATGAA-AGAATTG  1177


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