BAC Information

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BAC

Clone NameB6Ng01-252P24
Chromosome3 (Build37)
Map Location 51,225,710 - 51,429,004
singlet/doubletdoublet
Overlap geneNarg1, Rab33b, Setd7, LOC100039684
Upstream geneSlc7a11, EG621304, LOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1
Downstream geneMgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252P24.bB6Ng01-252P24.g
ACCGA059850GA059851
length1,049939
definitionB6Ng01-252P24.b B6Ng01-252P24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,427,953 - 51,429,004)(51,225,710 - 51,226,615)
sequence
gaattctggatttggactgatctaactgggtccacgttctgcttatttgt
ttatactcatgaggcaggtacccaggctccatgagacagtccctagtcca
tagaacagtaatcaaatactaacccaggactggagagatggctcagtggt
taagagcactctgttcttccagaggtcctgagttcaattcccagcaacat
atgatggctcacaaccatctgtaataggatctaatgccctcttctggtgg
gtctgtgaacagtgacagtgtacttacatacatgaaataaataaaatctt
taaaaaaaaaatgttaacccagagccagaaaccctaaaatctcacctgat
gatctggagtgactctgaaatctgcctcttgccaaccaacacagatgtcc
atagactgaaactcatccaggaccagcggctctgctgaggaccagaggga
gaccaagccatatcgggatctgtcacaactaatcacaaaagtttgtcctg
gtgacaaattttctagaatagcatctctattgttcaagtaatgatccatc
tatagacactcccagcaaattcatggttctgtcacgtctgttgcctttta
ataaagagttctttggatttacattttccagtgcgtaaggaacagagaaa
tattccctccgaaagagaaaacaggagcggcttttactttgaatttcaag
gcagagtgtgtgagattagtagtggtcttcagtaaaatattaaaatctat
tatggtcaaaaatcctactaagacagaaatggattttgaagctgtgacat
ttgaggcagagattccaccaactttggattacacaagccaggaaagggag
tctggtaatgggcccttcagacccacttataatgttaaaaccctgtcagg
tactcaggaaatggctttgtcaataaagtgcttgcttgccataaacgtgt
acctctaggatactgccagaacacaagtaatgacaccagtatgtggcctg
tcccagcactggtgagtgacgtaggtgtgtgccttggcctcatgaccat
gaattcatatcctggagtcatagacagctgtgagagccaccatgtaggta
ctgggaatagaacctgactttcctggaagagaaaccagtgctcttaacca
cactgagccatctctctggccccaaaaggaagacgtttagtttaaatttt
tatttattttgtgtatgtgtgtgcacatgcacgtgcacatgcataatact
gcagtgggatatgtggtgatcagagccagtttgtggcagttggttctcta
cttttaccacgtgggtactggggatcaaactcagttcaacaggctgggca
ccaggcatctgtacctactgagctatcctgctggtgccatgcagatattg
ttattaagtaaacagactgaagttaaagtaaggtttgcagctagagctag
gaatgaggaactagactttacatcattcagggaagaaagatgaaataaac
ccttttctcctcaggttgcttctggtcatggtgttttatcacagcaatag
aaaccctttctaagacagctctcaagttcctgttgcctacagttccttct
ctacagttagcactgtaacctggaagtgtgagctaaaataaacccttttc
tctcccaagttgcatctgtcatattttattacagcaataggaaatgaaat
tagacaggacactagtgagttatatgggcttatttatttttacatgaaga
attaagtctctactgaatatttgctactgcagaatattgaatacctttag
tgttgtttttcagagttgtcctaatcttcaagtcaaaagtcatcaatgat
tttttaaatcgtaaaactcaagccagcaactcaatagtttgtaactagtg
aaccttaggatggagtgcaccaggcagtgttagttggtattatgcagctt
gatggtacatgcagcacaatgggtacacgctgtgtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51427953_51429004
seq2: B6Ng01-252P24.b_48_1096 (reverse)

seq1  ATGGTCATGA-GCCCAGGCACACACCTACGTCCACCTCACCAGTGCTGGG  49
      |||||||||| ||| |||||||||||||||||   |||||||||||||||
seq2  ATGGTCATGAGGCCAAGGCACACACCTACGTC--ACTCACCAGTGCTGGG  48

seq1  ACAGGCCACATACCTGGTGTCATTACTTGTGTTCTGGCAGTTATCCTAGA  99
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  ACAGGCCACATA-CTGGTGTCATTACTTGTGTTCTGGCAG-TATCCTAGA  96

seq1  GGTACACGTTTATGGCAAGCAAGCACTTTATTGACAAAGCCATTTCCTGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACGTTTATGGCAAGCAAGCACTTTATTGACAAAGCCATTTCCTGA  146

seq1  GTACCTGACAGGGTTTTAACATTATAAGTGGGTCTGAAGGGCCCATTACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGACAGGGTTTTAACATTATAAGTGGGTCTGAAGGGCCCATTACC  196

seq1  AGACTCCCTTTCCTGGCTTGTGTAATCCAAAGTTGGTGGAATCTCTGCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCCTTTCCTGGCTTGTGTAATCCAAAGTTGGTGGAATCTCTGCCT  246

seq1  CAAATGTCACAGCTTCAAAATCCATTTCTGTCTTAGTAGGATTTTTGACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCACAGCTTCAAAATCCATTTCTGTCTTAGTAGGATTTTTGACC  296

seq1  ATAATAGATTTTAATATTTTACTGAAGACCACTACTAATCTCACACACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGATTTTAATATTTTACTGAAGACCACTACTAATCTCACACACTC  346

seq1  TGCCTTGAAATTCAAAGTAAAAGCCGCTCCTGTTTTCTCTTTCGGAGGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGAAATTCAAAGTAAAAGCCGCTCCTGTTTTCTCTTTCGGAGGGA  396

seq1  ATATTTCTCTGTTCCTTACGCACTGGAAAATGTAAATCCAAAGAACTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTCTGTTCCTTACGCACTGGAAAATGTAAATCCAAAGAACTCTT  446

seq1  TATTAAAAGGCAACAGACGTGACAGAACCATGAATTTGCTGGGAGTGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAGGCAACAGACGTGACAGAACCATGAATTTGCTGGGAGTGTCT  496

seq1  ATAGATGGATCATTACTTGAACAATAGAGATGCTATTCTAGAAAATTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGATCATTACTTGAACAATAGAGATGCTATTCTAGAAAATTTGT  546

seq1  CACCAGGACAAACTTTTGTGATTAGTTGTGACAGATCCCGATATGGCTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGACAAACTTTTGTGATTAGTTGTGACAGATCCCGATATGGCTTG  596

seq1  GTCTCCCTCTGGTCCTCAGCAGAGCCGCTGGTCCTGGATGAGTTTCAGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTCTGGTCCTCAGCAGAGCCGCTGGTCCTGGATGAGTTTCAGTC  646

seq1  TATGGACATCTGTGTTGGTTGGCAAGAGGCAGATTTCAGAGTCACTCCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACATCTGTGTTGGTTGGCAAGAGGCAGATTTCAGAGTCACTCCAG  696

seq1  ATCATCAGGTGAGATTTTAGGGTTTCTGGCTCTGGGTTAACATTTTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGGTGAGATTTTAGGGTTTCTGGCTCTGGGTTAACATTTTTTTT  746

seq1  TTAAAGATTTTATTTATTTCATGTATGTAAGTACACTGTCACTGTTCACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTTTATTTATTTCATGTATGTAAGTACACTGTCACTGTTCACA  796

seq1  GACCCACCAGAAGAGGGCATTAGATCCTATTACAGATGGTTGTGAGCCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACCAGAAGAGGGCATTAGATCCTATTACAGATGGTTGTGAGCCAT  846

seq1  CATATGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAACAGAGTGCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAACAGAGTGCTC  896

seq1  TTAACCACTGAGCCATCTCTCCAGTCCTGGGTTAGTATTTGATTACTGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACTGAGCCATCTCTCCAGTCCTGGGTTAGTATTTGATTACTGTT  946

seq1  CTATGGACTAGGGACTGTCTCATGGAGCCTGGGTACCTGCCTCATGAGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGACTAGGGACTGTCTCATGGAGCCTGGGTACCTGCCTCATGAGTA  996

seq1  TAAACAAATAAGCAGAACGTGGACCCAGTTAGATCAGTCCAAATCCAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAATAAGCAGAACGTGGACCCAGTTAGATCAGTCCAAATCCAGAA  1046

seq1  TTC  1052
      |||
seq2  TTC  1049

seq1: chr3_51225710_51226615
seq2: B6Ng01-252P24.g_66_972

seq1  GAATTCATATCCTGGAGTCATAGACAGCTGTGAGAGCCACCATGTAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCCTGGAGTCATAGACAGCTGTGAGAGCCACCATGTAGGTA  50

seq1  CTGGGAATAGAACCTGACTTTCCTGGAAGAGAAACCAGTGCTCTTAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATAGAACCTGACTTTCCTGGAAGAGAAACCAGTGCTCTTAACCA  100

seq1  CACTGAGCCATCTCTCTGGCCCCAAAAGGAAGACGTTTAGTTTAAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCATCTCTCTGGCCCCAAAAGGAAGACGTTTAGTTTAAATTTT  150

seq1  TATTTATTTTGTGTATGTGTGTGCACATGCACGTGCACATGCATAATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTGTGTATGTGTGTGCACATGCACGTGCACATGCATAATACT  200

seq1  GCAGTGGGATATGTGGTGATCAGAGCCAGTTTGTGGCAGTTGGTTCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGATATGTGGTGATCAGAGCCAGTTTGTGGCAGTTGGTTCTCTA  250

seq1  CTTTTACCACGTGGGTACTGGGGATCAAACTCAGTTCAACAGGCTGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCACGTGGGTACTGGGGATCAAACTCAGTTCAACAGGCTGGGCA  300

seq1  CCAGGCATCTGTACCTACTGAGCTATCCTGCTGGTGCCATGCAGATATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATCTGTACCTACTGAGCTATCCTGCTGGTGCCATGCAGATATTG  350

seq1  TTATTAAGTAAACAGACTGAAGTTAAAGTAAGGTTTGCAGCTAGAGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAGTAAACAGACTGAAGTTAAAGTAAGGTTTGCAGCTAGAGCTAG  400

seq1  GAATGAGGAACTAGACTTTACATCATTCAGGGAAGAAAGATGAAATAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGGAACTAGACTTTACATCATTCAGGGAAGAAAGATGAAATAAAC  450

seq1  CCTTTTCTCCTCAGGTTGCTTCTGGTCATGGTGTTTTATCACAGCAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTCCTCAGGTTGCTTCTGGTCATGGTGTTTTATCACAGCAATAG  500

seq1  AAACCCTTTCTAAGACAGCTCTCAAGTTCCTGTTGCCTACAGTTCCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTTCTAAGACAGCTCTCAAGTTCCTGTTGCCTACAGTTCCTTCT  550

seq1  CTACAGTTAGCACTGTAACCTGGAAGTGTGAGCTAAAATAAACCCTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTAGCACTGTAACCTGGAAGTGTGAGCTAAAATAAACCCTTTTC  600

seq1  TCTCCCAAGTTGCATCTGTCATATTTTATTACAGCAATAGGAAATGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAAGTTGCATCTGTCATATTTTATTACAGCAATAGGAAATGAAAT  650

seq1  TAGACAGGACACTAGTGAGTTATATGGGCTTATTTATTTTTACATGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGGACACTAGTGAGTTATATGGGCTTATTTATTTTTACATGAAGA  700

seq1  ATTAAGTCTCTACTGAATATTTGCTACTGCAGAATATTGAATACCTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTCTCTACTGAATATTTGCTACTGCAGAATATTGAATACCTTTAG  750

seq1  TGTTGTTTTTCAGAGTTGTCCTAATCTTCAAGTCAAAAGTCATCAAATGA  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTTGTTTTTCAGAGTTGTCCTAATCTTCAAGTCAAAAGTCATC-AATGA  799

seq1  TTTTTTAAATCGTAAAACTCAAGCCAGCAACTCAATAG-TTGTAACTAGT  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTTTAAATCGTAAAACTCAAGCCAGCAACTCAATAGTTTGTAACTAGT  849

seq1  GAACCTTA-GATGGAGTGCACCAGGCAGTGTTAGTTGGTATTATGCAGCT  898
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTAGGATGGAGTGCACCAGGCAGTGTTAGTTGGTATTATGCAGCT  899

seq1  TGATGGTA  906
      ||||||||
seq2  TGATGGTA  907