BAC Information

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BAC

Clone NameB6Ng01-253B10
Chromosome3 (Build37)
Map Location 54,882,571 - 54,883,705
singlet/doubletsinglet
Overlap gene4931419H13Rik
Upstream geneLOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1
Downstream geneSpg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253B10.bB6Ng01-253B10.g
ACCGA059916GA059917
length8291,142
definitionB6Ng01-253B10.b B6Ng01-253B10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactaaggaatcttgaatgaccaagaggcacctaaagaaatg
ttcgacatccttagtcatcagggaaatgcaaatcaaaatgaccctgagat
tctacctcacaccaatcagaatggctaagataaaaaaaacttaggtgaca
gcagatgctggtgaaagatgtggaaaaagaggaacactcctccattgttg
gtgggactgcaagctgataagaccactctggaaatcatcctcagaaaatt
ggaaatagttctacctgaagacccagctataccactcctggtcatatacc
caaaagatgctccaacatataacaaggacacatgctccaccagcagcctt
atttataatagccagaagctgggaacaacccatatgtccctcaacaaaag
aatgaatacagaaaatgttgtacatttacacaatggagttctactcaact
attaaaaacaatgacttcatgaaatttgcaggcaaatggatggaactaga
aaatatcatcttgagtgaggtaacccagacacaaaagaacatgcatggta
tgtactcattgataagtggatattaacccaaaagctcagaaaacccatga
tataattcacagaccatattaagtttaagaagaagaaaggcggaagtgtg
gatgtttcagtcttacttagaatgtggagcaaaatgatcatgagagataa
agggagggaggcacctgggagggagagaggagggggaggtaaaaggggac
aggatcagctatgggaagagacaggaaagaaggatcaggtaattgaacaa
aaatatgttacagtggtgggtggggaatc
gaattccattactttgatcacgtatcaaataagctttagctactgaataa
aacattaagaaaaatcataggtaaactttgctgttttaaaatcatgattc
tggtttctttgtatatttaacatgaagtagtccaggagcaaggtctgtgg
tcagagactcatttcagtgatgtagcacacacaggaaaacaataaactat
tccacccccctacacggaactatctcaattgcatttggttacatttggta
ttaaggcttcagagttaaaatggaagcctcagaaaagttatgatacttga
aaagtcagatcctcattaaaatggtgattgtgggattctattgccactac
tccctccatgctggttcttactgaagggagaagagtaaagtaatgatgag
agtctctgactttgcgaacacacacatacacacatgtgcgcgagtgcatg
cacgcgcgcgcgcacacacacacacacacacacacacacacgtgcacaca
tgcttggatttataatcctcatactttctgcagcatccaggaaaccccca
agtctcaagggtattttcagatttgttatattatacggaaaagaatttaa
agccattggaagcttccgaagtcgacatcatcctgcatctttgcaaacgc
taacgtcacgcattccttagttatatcacaacatctacaaaaacattaat
gtgagcagcttccaaccaagcccagcgcttgacactttagaaagttgtta
atgagcatgcggtcctgtacaagtcagtgtttaaaacaattatattccta
cggttttatatctgaaaataattagtagggattattttccttattccaca
accacggtattaattagcaaataccagctgtctatttggcctcttccatc
ctctcctttctccagcccacaccatttccaacacccacccctttacctcc
ttgcttatctctatgctccacccttttagagctgcccctcgtcttttcca
actgattcagctgccattgggtttaaaactgccgtacattgcaacgggaa
gtttggtatctgtgttaaggcttaagttggcggtcagtgatacttttcct
tgcctccaaggaatatactcttggatattctctcacctatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_54882571_54883705
seq2: B6Ng01-253B10.g_65_1206

seq1  GAATTCCATTACTTTGATCACGTATCAAATAAGCTTTAGCTACTGAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTACTTTGATCACGTATCAAATAAGCTTTAGCTACTGAATAA  50

seq1  AACATTAAGAAAAATCATAGGTAAACTTTGCTGTTTTAAAATCATGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAAGAAAAATCATAGGTAAACTTTGCTGTTTTAAAATCATGATTC  100

seq1  TGGTTTCTTTGTATATTTAACATGAAGTAGTCCAGGAGCAAGGTCTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTTGTATATTTAACATGAAGTAGTCCAGGAGCAAGGTCTGTGG  150

seq1  TCAGAGACTCATTTCAGTGATGTAGCACACACAGGAAAACAATAAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACTCATTTCAGTGATGTAGCACACACAGGAAAACAATAAACTAT  200

seq1  TCCACCCCCCTACACGGAACTATCTCAATTGCATTTGGTTACATTTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCCCTACACGGAACTATCTCAATTGCATTTGGTTACATTTGGTA  250

seq1  TTAAGGCTTCAGAGTTAAAATGGAAGCCTCAGAAAAGTTATGATACTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCTTCAGAGTTAAAATGGAAGCCTCAGAAAAGTTATGATACTTGA  300

seq1  AAAGTCAGATCCTCATTAAAATGGTGATTGTGGGATTCTATTGCCACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGATCCTCATTAAAATGGTGATTGTGGGATTCTATTGCCACTAC  350

seq1  TCCCTCCATGCTGGTTCTTACTGAAGGGAGAAGAGTAAAGTAATGATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCATGCTGGTTCTTACTGAAGGGAGAAGAGTAAAGTAATGATGAG  400

seq1  AGTCTCTGACTTTGCGAACACACACATACACACATGTGCGCGAGTGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGACTTTGCGAACACACACATACACACATGTGCGCGAGTGCATG  450

seq1  CACGCGCGCGCGCACACACACACACACACACACACACACACGTGCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGCGCGCGCACACACACACACACACACACACACACACGTGCACACA  500

seq1  TGCTTGGATTTATAATCCTCATACTTTCTGCAGCATCCAGGAAACCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGATTTATAATCCTCATACTTTCTGCAGCATCCAGGAAACCCCCA  550

seq1  AGTCTCAAGGGTATTTTCAGATTTGTTATATTATACGGAAAAGAATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAGGGTATTTTCAGATTTGTTATATTATACGGAAAAGAATTTAA  600

seq1  AGCCATTGGAAGCTTCCGAAGTCGACATCATCCTGCATCTTTGCAAACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGGAAGCTTCCGAAGTCGACATCATCCTGCATCTTTGCAAACGC  650

seq1  TAACGTCACGCATTCCTTAGTTATATCACAACATCTACAAAAACATTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTCACGCATTCCTTAGTTATATCACAACATCTACAAAAACATTAAT  700

seq1  GTGAGCAGCTTCCAACCAAGCCCAGCGCTTGACACTTTAGAAAGTTGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAGCTTCCAACCAAGCCCAGCGCTTGACACTTTAGAAAGTTGTTA  750

seq1  ATGAGCATGCGGTCCTGTACAAGTCAGTGTTTAAAACAATTATATTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCATGCGGTCCTGTACAAGTCAGTGTTTAAAACAATTATATTCCTA  800

seq1  CGGTTTTATATCTGAAAATAATTAGTAGGGATTATTTTCCTTATTCCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTTATATCTGAAAATAATTAGTAGGGATTATTTTCCTTATTCCACA  850

seq1  ACCACGGTATTAATTAGCAAATACCAGCTGTCTATTTGGCCTCTTCCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGGTATTAATTAGCAAATACCAGCTGTCTATTTGGCCTCTTCCATC  900

seq1  CTCTCC-TTCTCCAGCCCACACCATTTCCAACACCCACCCCTTTACCTCC  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTTCTCCAGCCCACACCATTTCCAACACCCACCCCTTTACCTCC  950

seq1  TTGCTTATCTCTATGCTCCACCCTTTTAGAGCTG-CCCTCGTCTTTTCCA  998
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGCTTATCTCTATGCTCCACCCTTTTAGAGCTGCCCCTCGTCTTTTCCA  1000

seq1  ACTGATTCAGCTGCCATT-GGTTTAAAACTGCCGGTACATTGCAAC-GGA  1046
      |||||||||||||||||| |||||||||||||| |||||||||||| |||
seq2  ACTGATTCAGCTGCCATTGGGTTTAAAACTGCC-GTACATTGCAACGGGA  1049

seq1  AGTTTGGTATCTGTGTTAGGGCTTAAG-TGGCGGTCAAGTGATACTTTT-  1094
      |||||||||||||||||| |||||||| |||||||| |||||||||||| 
seq2  AGTTTGGTATCTGTGTTAAGGCTTAAGTTGGCGGTC-AGTGATACTTTTC  1098

seq1  CTTG-CTCCAA-GAATATACTCTTTGATATT-TCTCACTTATCC  1135
      |||| |||||| |||||||||||| |||||| |||||| |||||
seq2  CTTGCCTCCAAGGAATATACTCTTGGATATTCTCTCACCTATCC  1142