BAC Information

Click to search

BAC

Clone NameB6Ng01-253C13
Chromosome3 (Build37)
Map Location 96,179,605 - 96,180,690
singlet/doubletsinglet
Overlap genenone
Upstream gene4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
Downstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253C13.bB6Ng01-253C13.g
ACCGA059968GA059969
length1,1631,083
definitionB6Ng01-253C13.b B6Ng01-253C13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcttcctcaggacaattgaatatcattgttctaaaaacagatgt
gtgagaccagacgaggctgaggcaagttctacaaacaattttttaaaaac
taaaaaggggccaaaaatgaatattttggcaaacttctatagaagaccaa
aggcccaagcttaaaatattactaaacactattgagattgaaggaatggt
ggtcactggagcagaggtcaccattatctctccaaaatcttggccttcag
attggccacttcaagaagtagacatcctgtttcaaggagttggactttat
tccgaataaagcaaagcaccagatgttttaaatgtacaaggcctgagggc
cagataggaaaattaaggccatatgtggctgatatagccataaacttatg
gggaatagatctgttacaacagtggaaaacacaacttaatatccctcagt
ttcataggtcagccacaaaacctgtcaggctcctaatttaaaaaaaaatc
aaattagttaaggaacgttatcaaagacggttacaaactgtccaggctgc
ccataaacaagacaaggcagaggctgacaattcaactctacatcaaggag
ccagtgctgatcaaacatcagcaacccccactaaggtggttgactgacca
acccatttggattaatcaatgatctacgacaaaagaaaaactacaggcac
tagaacagcctagtccaggagcagctgggggctcagcacatagaggagtc
caccagcccttggaattctctggtaaatctaatagaggacgttgacagat
ctcacaatgattaataagattattcaccaatgggttccctgcagcctgga
aatcccattgccttccttgttgcctaaagaatggtctatcatagtgattg
atctaaaagattattttttcacaattcctctacatgaacacaataaggag
aggttgcttctagtacctacctttatagacgtgtccataaaagatatcat
ggaaagtcctaccaaagatggtaaatagtcccacctatggcatattttgg
tactaagaaatgatatttggcatgaatgtgtcatttacagagtggtaact
ggatatgtgcacccactttagacccattctagaatacatggacaacgcct
tagcctctcgaag
gaattctatctaggtaaattaagctgtcctagaactcacggtggtccact
cacttgcctcttcctctccaagactggactgaaggcacacagcaccacaa
aaggaataagaggagttttgttctgtgttaagatgactgtttgcaggcag
cagatcatggggacattgtgtcagtcttctgcctatcacatgatctctct
tctggttttaaaaaaatacacagttgactttcttcatagtggtatagtga
caaaaatgatttggggcatgtttcaggagccatgctaccctggtttcaaa
tcccaaggttgaaatttcatgtcagtagatgtggctatctctgtccccag
tgttctcacatccctcttgattttccccagtcccctgctaagcactgtat
taccctgagatagcaaattctgccctctttctactatttctctcagtact
tgggatagaatccatgttatcggtttttgtcagaaagccagtaaatccat
tatctgcatttacagccaactacctccaacaaccgggcatttagttccgt
actatagacccacgacactcaccatagtccccacactacttcccaggctc
atagggccccattaacgcacacctgtaacatccaagttccacactagtcc
ccaggctgttttggcttgcacacttctctgctgcagctgtctgttcccct
ttaaactagcaaggctttctccacctttcctgttctctctgcgcccgaga
gattgccatgtaatttaaaaactgacgaataaactgtgctttctcccatg
gagtggtccgggtctggttcctaggttttactatgccgtcctccattagg
ctgtgagcagtcttccactgagctgtctgcaatcctactttgtaaccttt
gatttgtggtggtttgttactaaattgcacaagtgattgtagtccaggct
ggatttggcgtttgtgatcctcttgccagagtctgtggattactggtcag
gataaacagacgagctttttgtagttcacacagccacttgaggagacccc
aggatgagtcacttttcctgagaggcggggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96179605_96180690
seq2: B6Ng01-253C13.g_63_1145

seq1  GAATTCTATCTAGGTAAATTAAGCTGTCCTAGAACTCACGGTGGTCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTAGGTAAATTAAGCTGTCCTAGAACTCACGGTGGTCCACT  50

seq1  CACTTGCCTCTTCCTCTCCAAGACTGGACTGAAGGCACACAGCACCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCCTCTTCCTCTCCAAGACTGGACTGAAGGCACACAGCACCACAA  100

seq1  AAGGAATAAGAGGAGTTTTGTTCTGTGTTAAGATGACTGTTTGCAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAAGAGGAGTTTTGTTCTGTGTTAAGATGACTGTTTGCAGGCAG  150

seq1  CAGATCATGGGGACATTGTGTCAGTCTTCTGCCTATCACATGATCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATGGGGACATTGTGTCAGTCTTCTGCCTATCACATGATCTCTCT  200

seq1  TCTGGTTTTAAAAAAATACACAGTTGACTTTCTTCATAGTGGTATAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTTAAAAAAATACACAGTTGACTTTCTTCATAGTGGTATAGTGA  250

seq1  CAAAAATGATTTGGGGCATGTTTCAGGAGCCATGCTACCCTGGTTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGATTTGGGGCATGTTTCAGGAGCCATGCTACCCTGGTTTCAAA  300

seq1  TCCCAAGGTTGAAATTTCATGTCAGTAGATGTGGCTATCTCTGTCCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGTTGAAATTTCATGTCAGTAGATGTGGCTATCTCTGTCCCCAG  350

seq1  TGTTCTCACATCCCTCTTGATTTTCCCCAGTCCCCTGCTAAGCACTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCACATCCCTCTTGATTTTCCCCAGTCCCCTGCTAAGCACTGTAT  400

seq1  TACCCTGAGATAGCAAATTCTGCCCTCTTTCTACTATTTCTCTCAGTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGAGATAGCAAATTCTGCCCTCTTTCTACTATTTCTCTCAGTACT  450

seq1  TGGGATAGAATCCATGTTATCGGTTTTTGTCAGAAAGCCAGTAAATCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGAATCCATGTTATCGGTTTTTGTCAGAAAGCCAGTAAATCCAT  500

seq1  TATCTGCATTTACAGCCAACTACCTCCAACAACCGGGCATTTAGTTCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCATTTACAGCCAACTACCTCCAACAACCGGGCATTTAGTTCCGT  550

seq1  ACTATAGACCCACGACACTCACCATAGTCCCCACACTACTTCCCAGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGACCCACGACACTCACCATAGTCCCCACACTACTTCCCAGGCTC  600

seq1  ATAGGGCCCCATTAACGCACACCTGTAACATCCAAGTTCCACACTAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCCCCATTAACGCACACCTGTAACATCCAAGTTCCACACTAGTCC  650

seq1  CCAGGCTGTTTTGGCTTGCACACTTCTCTGCTGCAGCTGTCTGTTCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGTTTTGGCTTGCACACTTCTCTGCTGCAGCTGTCTGTTCCCCT  700

seq1  TTAAACTAGCAAGGCTTTCTCCACCTTTCCTGTTCTCTCTGCGCCCGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTAGCAAGGCTTTCTCCACCTTTCCTGTTCTCTCTGCGCCCGAGA  750

seq1  GATTGCCATGTAATTTAAAAACTGACGAATAAACTGTGCTTTCTCCCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCATGTAATTTAAAAACTGACGAATAAACTGTGCTTTCTCCCATG  800

seq1  GAGTGGTCCGGGTCTGGTTCCTAGGTTTTACTATGCCGTCCTCCATTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTCCGGGTCTGGTTCCTAGGTTTTACTATGCCGTCCTCCATTAGG  850

seq1  CTGTGAGCAGTCTTCCACTGAGCTGTCTGCAATCCTACTTTGTAACCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCAGTCTTCCACTGAGCTGTCTGCAATCCTACTTTGTAACCTTT  900

seq1  GATTTGTGGTGGTTTGTTACTAAATTGCACAAGGTGATTGTAGTCCAGGC  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATTTGTGGTGGTTTGTTACTAAATTGCACAA-GTGATTGTAGTCCAGGC  949

seq1  TGGATTTGGCGTTTGTGATCCTCTTGCCAGAGTCTGTGGATTACTGGTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGGCGTTTGTGATCCTCTTGCCAGAGTCTGTGGATTACTGGTCA  999

seq1  GGATAAACAGACGAGGCTTTTGTAGTTCACACAGCCACTTGAGGAGACCC  1050
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  GGATAAACAGACGAGCTTTTTGTAGTTCACACAGCCACTTGAGGAGACCC  1049

seq1  AAGGATGAGGTCACTTTTCCCTGAGAGGCGGGGAAT  1086
       ||||||| ||||||||| |||||||||||||||||
seq2  CAGGATGA-GTCACTTTT-CCTGAGAGGCGGGGAAT  1083