BAC Information

Click to search

BAC

Clone NameB6Ng01-253H14
Chromosome3 (Build37)
Map Location 91,542,003 - 91,543,154
singlet/doubletsinglet
Overlap geneLOC100042463
Upstream genePglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253H14.bB6Ng01-253H14.g
ACCGA060194GA060195
length1,1481,173
definitionB6Ng01-253H14.b B6Ng01-253H14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctactccctaaccacacagatgaattattaacaaatcatgtgtca
gataaaaagtgcattaggcaaggtgtcccagaatgagagaataagatgac
agctggtggtgctctcacactcactaagatcaatcactaatacacttaag
ccccctaacatctatcccttgtacttggcttacccaatgctttaatatgt
agaaacgtccaccacttaagaaaaatacacaggcatgtttttctcagggt
ttcacaacctgtagctttagtgggagtcactaatcagttgcctccaggga
aaaatgaggagaaagtaactgagaatgacggatggaactttgacttttca
acctgaaacttgtgtttatatccattctagtgtcctgtgtttgcagcctc
tgcatctgtaaaaaccattcaccttttgacaggctggttttcaaggaaga
tggcttttatgtagactaaatttctatggagacaactttgggatacttct
agacaaaagagctgtcttacctttactctaaaacagagtcctagctctga
atttggaacactggcagaactaaattgcaaagtattaacccttgcttagt
atgtttcaccatgagcacaaatctctttacttttatacccaaatgggttt
cctgggtcagttttactatgcatttgcattctgctcacccaatgtgcacc
ctagtccttttccctggacactatcaatgctaacaatcatctttcttcca
ggaagtacaggaaattcctttaggtagtctattgaatgaaccaaaggatc
acagctttgaagaggctttggacatgataggacaaatgggaatggtgtac
tacaagaagatgaacaacaatgctttttaacattagcatcatcacatcga
tgtgcctggccttgaagagggtggacatagatatgaccaacgctcctaag
aagaagttttggccacctttccttctgtccaaccagagcttcaaaaattt
attggcacaggcattgaaattgtttttttgaggtctagagtcatggaaat
aaatctttctcctcaccagtgcttctccatgttttctgagtctctcttag
gacttgttacccctcagcaataccatcaggtgctctcatcttctatat
gaattcctcccttgaataggagccaggtaatgatgtatgtgctctaatat
attgaatataaaaagggtgctcacgcatcaaaatacatcaatattctgca
ataaccaaattaatggctgtttggaacaatgaacagatacttatacatgt
aggcaaactctgtacactataactttatataaagtaggcaagtcaaatcg
taatgtattgataaatttcacagcctaattgacctttaataaactttgaa
tttaaattttatttagaacaacatctggctaggtctgtaatagggctcta
agaagtgccacacaagtcgagatgaggctgctcccctccgagctcagcct
caacccaaatgcaaacttttctcaatctgaacactcagccagagtcttgg
ctcaaagattatctctatgtggatgtatccttaaagacctgttttcttgt
gtttgttcatgttgtttagaaagactccaaccttgagatcccaatcataa
gctaactttctattacaagcaaaaggttgtctgcccctttaacagttcca
tttgtaatcagtcctcagcagggctttttcagctgtacttggctcccagc
cacagtgcagctaacatataaacaagttaaaggatggacagccagcagat
aaagttttaaccatttatattttttaacatgaaatacagaacaataatca
ttcaaacaaccaaacaaaaacaaacatgaattgaaagacatatggacaat
ttgttgtggtgcaccataaacagacaatagacagacagggaatagaactt
ggtgtctcaaagggacacagatatcctaaccagagctaagaatatctcca
taggagctagagaggaagtagggagtctcccattttccttctgttccctg
gagagctctgataatagcttattttcattttttctcctttttgctaaaag
atcccaaacaggggataactgctttttctaaaatgtattttctctctctc
atgttcagactctactttcttatctccttcttctgggaatactgccagaa
aaaatggagaagaagcacagtgtcctgagagctattctttaagcttgatg
aagctgcttcttagtcaagtctcggagaagaggtaatgaacctaattaat
aatttaaccccttggtattccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91542003_91543154
seq2: B6Ng01-253H14.b_47_1194 (reverse)

seq1  ATATAGAAGATGGAAGAGCAACTGATGGGTAATTTGCCTGAGGGGT-ACA  49
      ||||||||||||  |||||| ||||| ||||  ||| ||||||||| |||
seq2  ATATAGAAGATG--AGAGCACCTGAT-GGTA--TTG-CTGAGGGGTAACA  44

seq1  AGTCCTAAGAGAGACTTCAG-AAACATGGAG-AGCACTGGTGAGGAGAAA  97
      ||||||||||||||| |||| |||||||||| ||||||||||||||||||
seq2  AGTCCTAAGAGAGAC-TCAGAAAACATGGAGAAGCACTGGTGAGGAGAAA  93

seq1  GATTTTATTTCCATGACTCTTAGACCTC-AAAAAACAATTTCAATGCCTG  146
      || |||||||||||||||| |||||||| |||||||||||||||||||||
seq2  GA-TTTATTTCCATGACTC-TAGACCTCAAAAAAACAATTTCAATGCCTG  141

seq1  TGCCAATAAATTTTTGAAGCTCTGGTTGGACAGAAGG-AAGGTGGCCAAA  195
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGCCAATAAATTTTTGAAGCTCTGGTTGGACAGAAGGAAAGGTGGCCAAA  191

seq1  ACTTCTTCTTAGGAGCGTTGGTCATATCTATGTCCACCCTCTTCAAGGCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCTTAGGAGCGTTGGTCATATCTATGTCCACCCTCTTCAAGGCC  241

seq1  AGGCACATCGATGTGATGATGCTAATGTTAAAAAGCATTGTTGTTCATCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATCGATGTGATGATGCTAATGTTAAAAAGCATTGTTGTTCATCT  291

seq1  TCTTGTAGTACACCATTCCCATTTGTCCTATCATGTCCAAAGCCTCTTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAGTACACCATTCCCATTTGTCCTATCATGTCCAAAGCCTCTTCA  341

seq1  AAGCTGTGATCCTTTGGTTCATTCAATAGACTACCTAAAGGAATTTCCTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGATCCTTTGGTTCATTCAATAGACTACCTAAAGGAATTTCCTG  391

seq1  TACTTCCTGGAAGAAAGATGATTGTTAGCATTGATAGTGTCCAGGGAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTGGAAGAAAGATGATTGTTAGCATTGATAGTGTCCAGGGAAAA  441

seq1  GGACTAGGGTGCACATTGGGTGAGCAGAATGCAAATGCATAGTAAAACTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGGGTGCACATTGGGTGAGCAGAATGCAAATGCATAGTAAAACTG  491

seq1  ACCCAGGAAACCCATTTGGGTATAAAAGTAAAGAGATTTGTGCTCATGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGAAACCCATTTGGGTATAAAAGTAAAGAGATTTGTGCTCATGGT  541

seq1  GAAACATACTAAGCAAGGGTTAATACTTTGCAATTTAGTTCTGCCAGTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATACTAAGCAAGGGTTAATACTTTGCAATTTAGTTCTGCCAGTGT  591

seq1  TCCAAATTCAGAGCTAGGACTCTGTTTTAGAGTAAAGGTAAGACAGCTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTCAGAGCTAGGACTCTGTTTTAGAGTAAAGGTAAGACAGCTCT  641

seq1  TTTGTCTAGAAGTATCCCAAAGTTGTCTCCATAGAAATTTAGTCTACATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAGAAGTATCCCAAAGTTGTCTCCATAGAAATTTAGTCTACATA  691

seq1  AAAGCCATCTTCCTTGAAAACCAGCCTGTCAAAAGGTGAATGGTTTTTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATCTTCCTTGAAAACCAGCCTGTCAAAAGGTGAATGGTTTTTAC  741

seq1  AGATGCAGAGGCTGCAAACACAGGACACTAGAATGGATATAAACACAAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGAGGCTGCAAACACAGGACACTAGAATGGATATAAACACAAGT  791

seq1  TTCAGGTTGAAAAGTCAAAGTTCCATCCGTCATTCTCAGTTACTTTCTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTGAAAAGTCAAAGTTCCATCCGTCATTCTCAGTTACTTTCTCC  841

seq1  TCATTTTTCCCTGGAGGCAACTGATTAGTGACTCCCACTAAAGCTACAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTCCCTGGAGGCAACTGATTAGTGACTCCCACTAAAGCTACAGG  891

seq1  TTGTGAAACCCTGAGAAAAACATGCCTGTGTATTTTTCTTAAGTGGTGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAACCCTGAGAAAAACATGCCTGTGTATTTTTCTTAAGTGGTGGA  941

seq1  CGTTTCTACATATTAAAGCATTGGGTAAGCCAAGTACAAGGGATAGATGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCTACATATTAAAGCATTGGGTAAGCCAAGTACAAGGGATAGATGT  991

seq1  TAGGGGGCTTAAGTGTATTAGTGATTGATCTTAGTGAGTGTGAGAGCACC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGCTTAAGTGTATTAGTGATTGATCTTAGTGAGTGTGAGAGCACC  1041

seq1  ACCAGCTGTCATCTTATTCTCTCATTCTGGGACACCTTGCCTAATGCACT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGTCATCTTATTCTCTCATTCTGGGACACCTTGCCTAATGCACT  1091

seq1  TTTTATCTGACACATGATTTGTTAATAATTCATCTGTGTGGTTAGGGAGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTGACACATGATTTGTTAATAATTCATCTGTGTGGTTAGGGAGT  1141

seq1  AGAATTC  1152
      |||||||
seq2  AGAATTC  1148