MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-254B02
Chromosome	3 (Build37)
Map Location	85,702,729 - 85,833,331
singlet/doublet	doublet
Overlap gene	LOC100042265, Gm1019
Upstream gene	LOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2
Downstream gene	Sh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC624889 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:624889
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 208 ESTs, 5 Proteins pseudo : _no_value

name	Fbxw7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50754 MGI:1354695
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dear1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:654362 MGI:3614654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042237 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042237
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	LOC100042125 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Pet112l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229487 MGI:2442496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9930021J17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229488 MGI:2444746
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Glt28d2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320302 MGI:2443773
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042265 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042265
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 136 ESTs, 4 Proteins

name	Gm1019 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:368202 MGI:2685865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sh3d19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27059 MGI:1350923
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rps3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20091 MGI:1202063
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC634201 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:634201
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Lrba (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80877 MGI:1933162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Mab21l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23937 MGI:1346022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667024 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667024 MGI:3645910
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100042319 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 742 ESTs

name	Dclk2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70762 MGI:1918012
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG625055 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625055 MGI:3646785
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 473 ESTs

name	Cd1d2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12480 MGI:107675
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd1d1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12479 MGI:107674
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667897 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667897
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Fbxw7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21218433 GeneID:50754 MGI:1354695
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box and WD-40 domain protein 7, archipelago homolog (Drosophila) transcript_id : NM_080428.2

name	Dear1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94818704 GeneID:654362 MGI:3614654
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dual endothelin 1/angiotensin II receptor 1 homolog (rat) transcript_id : NM_001040461.1

name	LOC100042237 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251245 GeneID:100042237
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100042237 transcript_id : XM_001477542.1

name	LOC100042125 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251240 GeneID:100042125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042125 transcript_id : XM_001477612.1

name	Pet112l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385128 GeneID:229487 MGI:2442496
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PET112-like (yeast) transcript_id : NM_144896.3

name	9930021J17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802502 GeneID:229488 MGI:2444746
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9930021J17 gene transcript_id : NM_172682.2

name	Glt28d2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802888 GeneID:320302 MGI:2443773
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycosyltransferase 28 domain containing 2 transcript_id : NM_177130.2

name	LOC100042265 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251249 GeneID:100042265
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 43 ESTs, 2 Proteins product : similar to hypoxia induced gene 1, transcript variant 1 transcript_id : XM_001477636.1

name	LOC100042265 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251251 GeneID:100042265
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 136 ESTs, 3 Proteins product : similar to hypoxia induced gene 1, transcript variant 2 transcript_id : XM_001477646.1

name	Gm1019 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:48717491 GeneID:368202 MGI:2685865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 1019, (NCBI) transcript_id : NM_001001650.1

name	Sh3d19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126723607 GeneID:27059 MGI:1350923
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SH3 domain protein D19 transcript_id : NM_001082414.1

name	Rps3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802659 GeneID:20091 MGI:1202063
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S3a transcript_id : NM_016959.3

name	LOC634201 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251242 GeneID:634201
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical LOC634201 transcript_id : XM_001477638.1

name	Lrba (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117956398 GeneID:80877 MGI:1933162
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LPS-responsive beige-like anchor transcript_id : NM_030695.2

name	Lrba (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117956396 GeneID:80877 MGI:1933162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LPS-responsive beige-like anchor transcript_id : NM_001077688.1

name	Lrba (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117956394 GeneID:80877 MGI:1933162
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LPS-responsive beige-like anchor transcript_id : NM_001077687.1

name	Mab21l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801523 GeneID:23937 MGI:1346022
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mab-21-like 2 (C. elegans) transcript_id : NM_011839.3

name	EG667024 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369608 GeneID:667024 MGI:3645910
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG667024 transcript_id : XM_994645.1

name	LOC100042319 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251257 GeneID:100042319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 742 ESTs product : hypothetical protein LOC100042319 transcript_id : XM_001477737.1

name	Dclk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254280 GeneID:70762 MGI:1918012
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : doublecortin-like kinase 2 transcript_id : NM_027539.3

name	EG625055 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369611 GeneID:625055 MGI:3646785
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 473 ESTs product : predicted gene, EG625055, transcript variant 3 transcript_id : XM_899463.2

name	Cd1d2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110665732 GeneID:12480 MGI:107675
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD1d2 antigen transcript_id : NM_007640.2

name	Cd1d1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227231 GeneID:12479 MGI:107674
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD1d1 antigen transcript_id : NM_007639.2

name	Fbxw7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21218434 CCDS:CCDS17440.1 GeneID:50754 MGI:1354695
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0005634 - nucleus [Evidence TAS] [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007219 - Notch signaling pathway [Evidence IDA]; GO:0016567 - protein ubiquitination [Evidence ISS]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : F-box-WD40 repeat protein 6; f-box only protein 30 product : F-box and WD-40 domain protein 7, archipelago homolog protein_id : NP_536353.2

name	Dear1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94818705 GeneID:654362 MGI:3614654
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : dual endothelin 1/angiotensin II receptor 1 homolog protein_id : NP_001035551.1

name	LOC100042237 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251246 GeneID:100042237
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477592.1

name	LOC100042125 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251241 GeneID:100042125
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477662.1

name	Pet112l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450279 CCDS:CCDS17441.1 GeneID:229487 MGI:2442496
definition	GO_function : GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : PET112-like protein_id : NP_659145.1

name	9930021J17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542059 CCDS:CCDS17442.1 GeneID:229488 MGI:2444746
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005529 - sugar binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : hypothetical protein LOC229488 protein_id : NP_766270.1

name	Glt28d2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893089 CCDS:CCDS17443.1 GeneID:320302 MGI:2443773
definition	GO_function : GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0030259 - lipid glycosylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glycosyltransferase 28 domain containing 1-like protein_id : NP_796104.1

name	LOC100042265 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251250 GeneID:100042265
definition	codon_start : 1 product : similar to hypoxia induced gene 1 isoform 1 protein_id : XP_001477686.1

name	LOC100042265 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251252 GeneID:100042265
definition	codon_start : 1 product : similar to hypoxia induced gene 1 isoform 2 protein_id : XP_001477696.1

name	Gm1019 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:48717492 CCDS:CCDS17444.1 GeneID:368202 MGI:2685865
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 function : serine protease product : epidermis-specific serine protease-like protein_id : NP_001001650.1

name	Sh3d19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126723608 GeneID:27059 MGI:1350923
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : SH3 domain containing protein D 19 product : SH3 domain protein D19 protein_id : NP_001075883.1

name	Rps3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980669 CCDS:CCDS17446.1 GeneID:20091 MGI:1202063
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005830 - cytosolic ribosome (sensu Eukaryota) [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] [Evidence NAS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0006412 - protein biosynthesis [Evidence ISS] [Evidence IEA]; GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006413 - translational initiation [Evidence ISS] codon_start : 1 exception : mismatches in translation product : ribosomal protein S3a protein_id : NP_058655.2

name	LOC634201 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251243 GeneID:634201
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477688.1

name	Lrba (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117956399 GeneID:80877 MGI:1933162
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0051018 - protein kinase A binding [Evidence ISS] GO_process : GO:0016197 - endosome transport [Evidence TAS]; GO:0008104 - protein localization [Evidence ISS]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 note : isoform alpha is encoded by transcript variant 1 product : LPS-responsive beige-like anchor isoform alpha protein_id : NP_109620.2

name	Lrba (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117956397 GeneID:80877 MGI:1933162
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0051018 - protein kinase A binding [Evidence ISS] GO_process : GO:0016197 - endosome transport [Evidence TAS]; GO:0008104 - protein localization [Evidence ISS]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 note : isoform beta is encoded by transcript variant 2 product : LPS-responsive beige-like anchor isoform beta protein_id : NP_001071156.1

name	Lrba (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117956395 GeneID:80877 MGI:1933162
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0051018 - protein kinase A binding [Evidence ISS] GO_process : GO:0016197 - endosome transport [Evidence TAS]; GO:0008104 - protein localization [Evidence ISS]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 note : isoform gamma is encoded by transcript variant 3 product : LPS-responsive beige-like anchor isoform gamma protein_id : NP_001071155.1

name	Mab21l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560522 CCDS:CCDS17447.1 GeneID:23937 MGI:1346022
definition	GO_process : GO:0010172 - embryonic body morphogenesis [Evidence IMP]; GO:0001747 - eye development (sensu Mammalia) [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP] codon_start : 1 product : mab-21-like 2 protein_id : NP_035969.2

name	EG667024 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94369609 GeneID:667024 MGI:3645910
definition	codon_start : 1 product : hypothetical protein protein_id : XP_999739.1

name	LOC100042319 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251258 GeneID:100042319
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477787.1

name	Dclk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254281 CCDS:CCDS17448.1 GeneID:70762 MGI:1918012
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : doublecortin and CaM kinase-like 2 product : doublecortin-like kinase 2 protein_id : NP_081815.3

name	EG625055 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82890069 GeneID:625055 MGI:3646785
definition	codon_start : 1 product : similar to hCG2016250, isoform 3 protein_id : XP_904556.1

name	Cd1d2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110665733 GeneID:12480 MGI:107675
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003823 - antigen binding [Evidence IEA]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence ISS] [Evidence IEA] GO_process : GO:0048006 - antigen processing and presentation, endogenous lipid antigen via MHC class Ib [Evidence ISS]; GO:0016045 - detection of bacterium [Evidence ISS]; GO:0045089 - positive regulation of innate immune response [Evidence ISS]; GO:0045086 - positive regulation of interleukin-2 biosynthesis [Evidence IDA]; GO:0045404 - positive regulation of interleukin-4 biosynthesis [Evidence IDA]; GO:0051135 - positive regulation of NK T cell activation [Evidence IDA]; GO:0001916 - positive regulation of T cell mediated cytotoxicity [Evidence IDA]; GO:0045058 - T cell selection [Evidence ISS] codon_start : 1 exception : unclassified translation discrepancy note : T-cell surface glycoprotein CD1d2 product : CD1d2 antigen protein_id : NP_031666.2

name	Cd1d1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671706 CCDS:CCDS17449.1 GeneID:12479 MGI:107674
definition	GO_component : GO:0005769 - early endosome [Evidence IDA]; GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0005770 - late endosome [Evidence IDA]; GO:0005764 - lysosome [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003823 - antigen binding [Evidence IEA]; GO:0030883 - endogenous lipid antigen binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA] [Evidence ISS] GO_process : GO:0019882 - antigen processing and presentation [Evidence IDA]; GO:0048006 - antigen processing and presentation, endogenous lipid antigen via MHC class Ib [Evidence ISS]; GO:0048007 - antigen processing and presentation, exogenous lipid antigen via MHC class Ib [Evidence IDA]; GO:0016045 - detection of bacterium [Evidence ISS]; GO:0045089 - positive regulation of innate immune response [Evidence ISS]; GO:0045078 - positive regulation of interferon-gamma biosynthesis [Evidence IMP]; GO:0045086 - positive regulation of interleukin-2 biosynthesis [Evidence IDA]; GO:0045404 - positive regulation of interleukin-4 biosynthesis [Evidence IMP] [Evidence IDA]; GO:0051135 - positive regulation of NK T cell activation [Evidence IDA]; GO:0051138 - positive regulation of NK T cell differentiation [Evidence IMP]; GO:0001916 - positive regulation of T cell mediated cytotoxicity [Evidence IDA]; GO:0045059 - positive thymic T cell selection [Evidence IMP]; GO:0050776 - regulation of immune response [Evidence IMP]; GO:0045058 - T cell selection [Evidence ISS] codon_start : 1 exception : mismatches in translation product : CD1d1 antigen protein_id : NP_031665.1

name	LOC667897 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667897
definition	number : 1 pseudo : _no_value

name	LOC624889 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251244 GeneID:624889
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 208 ESTs, 5 Proteins product : similar to suppressor of initiator codon mutations, related sequence 1 pseudo : _no_value transcript_id : XR_033260.1

clone name	MSMg01-356L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-201M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261F12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-355B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542I16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-275P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453H02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-480C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468P09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-306J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435G22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-299G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337J22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-323E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143A16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-060B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162K12
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-254B02.b	B6Ng01-254B02.g
ACC	GA060633	GA060634
length	1,131	1,169
definition	B6Ng01-254B02.b	B6Ng01-254B02.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(85,702,729 - 85,703,863)	(85,832,172 - 85,833,331)
sequence	gaattctcagtggcttatatgataaaaaggtatgaataatttaaatccac ggagttatcctaataatattgacttcttatatgtcattagactgtagttc ctcagccattcccacttccataattcatagtctcatccaaactttggaaa ggtggacctgctaggagggtcactgttctaatttaaaacacaatataaat caattgtagccacacaaatggttacaatgactcatgaaaacaaatctata tacgaacactgggaatcacccactagggactttttactcagttgcaaaac aaaagcaactgtgaagttgacactggttctaatggaaatgtgtgcaaaac aagcactcatctgtcaaataagaaattggaggtgatgaaaaccccagcat aagacataacagagggtacctgagacagcctggcttcaatattaaagatg agactacatagtgggtgcccatcgctaaaatgcttgggatacaaagtatt gttgaattttattccaatttgggaagtgtgtgtatatttaaaaagatata taatttgggattaggatataaatttaaacaagaaattcatttatggtttt tacccatcttctatatgttaagacggaggtaaagtattcttagtgctggt gactacaggtccagtgttcaggatggacttcttatatgtcattagactga actggtgactacaggtccagagtgagattttccacctgtaatatgtgagt gctcaacagttttagatttggtatagtttatactagggatgctcagactg catggggcccacaaagcctggatcctctcctctacccagagcagcatcag catcacatcactacctctgaactacttagaacagacaattagaaactctg ggaataaagcccaacagtgtgacttttaacaaggctacctaccaggtgat attgatgcttagtaaaatttggagaaacaattgacattaaatctaaggag gaaatattttaaggcacctcttttgtgcagcctgtaattcccagctactc atgagctgagcagagattcacgagtttggtaccaatggggacttatagat taagtcagtcagtctgaaaattagggacagc	gaattctcagccggctcatgctgttcttcccagtgtagacacctgagcta agttctcagaactgttgagtgtgaagagatgcctaagagacatctatcac gtttgctgtgaaaccttttttgatctcccaggagcagaagtaacacctgc cttctccctcttccatccagaacttagcacctatcagcactaacccgctt tgacacctcactgcttagagatgacaaagcctgtaatgcctgcttgcaca gtctcagtgcgacgcaaatagcgggatacacgggccggagttctccaaag ccagtgttgcctgtttttgtcttcttgtgggagcggttggttatgaatga ttcatagagtgtgtatcatcatccaaaagcttccaatagttctgattagg aaagaaagcattggaggtattacttcggaaatgtaaaccaagaaacgttt aacaccaacaaagcaatgcagtgctgagggacaatgcctctgtacagata aacgcagagtcacttctgtggctcccaggttacaccacaccacgggaaga aatgtgaactgcttatcagcacaacagctgtctactatgctaggacattc ttaaagtgcgtgcggcctcttcaccttcaccaaagccccgtggtgaaagt ccttgacatattgatgagaaagtaaagtctcagagaacatagtttgagaa ctaaatggggagatttttagagttgaagatcccccaagtccctgctttcc ccttaacatcagaaagctggtggggctctcatctgatgaacccgtccatg gtccacaaacaaaactgtctctcgccacaagccatgcttatcctacatta gatgacatgtcactcaaagactgaatccacagtcctgaactccttccccc agactctgagttttcttaagctcagaaaccccccaacgtcacagaagccc ttcgaaggtgagccaccttatgacagccaggagaagctttggagaagagc ccccaattactacctagtgtttttgggattcctttgttcttgttgctaac gtgaaacattgagcaagtggtgtacacgaacgttaacgatgcagagcatc ataccatattagagcctggattctgtgcagaataccactgccttcaattc tgcactcttctctgcactc
quality values	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chr3_85702729_85703863
seq2: B6Ng01-254B02.b_44_1174

seq1  GAATTCTCAGTGGCTTATATGATAAAAAGGTATGAATAATTTAAATCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTGGCTTATATGATAAAAAGGTATGAATAATTTAAATCCAC  50

seq1  GGAGTTATCCTAATAATATTGACTTCTTATATGTCATTAGACTGTAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTATCCTAATAATATTGACTTCTTATATGTCATTAGACTGTAGTTC  100

seq1  CTCAGCCATTCCCACTTCCATAATTCATAGTCTCATCCAAACTTTGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCATTCCCACTTCCATAATTCATAGTCTCATCCAAACTTTGGAAA  150

seq1  GGTGGACCTGCTAGGAGGGTCACTGTTCTAATTTAAAACACAATATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACCTGCTAGGAGGGTCACTGTTCTAATTTAAAACACAATATAAAT  200

seq1  CAATTGTAGCCACACAAATGGTTACAATGACTCATGAAAACAAATCTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTAGCCACACAAATGGTTACAATGACTCATGAAAACAAATCTATA  250

seq1  TACGAACACTGGGAATCACCCACTAGGGACTTTTTACTCAGTTGCAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAACACTGGGAATCACCCACTAGGGACTTTTTACTCAGTTGCAAAAC  300

seq1  AAAAGCAACTGTGAAGTTGACACTGGTTCTAATGGAAATGTGTGCAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAACTGTGAAGTTGACACTGGTTCTAATGGAAATGTGTGCAAAAC  350

seq1  AAGCACTCATCTGTCAAATAAGAAATTGGAGGTGATGAAAACCCCAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCATCTGTCAAATAAGAAATTGGAGGTGATGAAAACCCCAGCAT  400

seq1  AAGACATAACAGAGGGTACCTGAGACAGCCTGGCTTCAATATTAAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATAACAGAGGGTACCTGAGACAGCCTGGCTTCAATATTAAAGATG  450

seq1  AGACTACATAGTGGGTGCCCATCGCTAAAATGCTTGGGATACAAAGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACATAGTGGGTGCCCATCGCTAAAATGCTTGGGATACAAAGTATT  500

seq1  GTTGAATTTTATTCCAATTTGGGAAGTGTGTGTATATTTAAAAAGATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTTTATTCCAATTTGGGAAGTGTGTGTATATTTAAAAAGATATA  550

seq1  TAATTTGGGATTAGGATATAAATTTAAACAAGAAATTCATTTATGGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGGATTAGGATATAAATTTAAACAAGAAATTCATTTATGGTTTT  600

seq1  TACCCATCTTCTATATGTTAAGACGGAGGTAAAGTATTCTTAGTGCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATCTTCTATATGTTAAGACGGAGGTAAAGTATTCTTAGTGCTGGT  650

seq1  GACTACAGGTCCAGTGTTCAGGATGGACTTCTTATATGTCATTAGACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGGTCCAGTGTTCAGGATGGACTTCTTATATGTCATTAGACTGA  700

seq1  ACTGGTGACTACAGGTCCAGAGTGAGATTTTCCACCTGTAATATGTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGACTACAGGTCCAGAGTGAGATTTTCCACCTGTAATATGTGAGT  750

seq1  GCTCAACAGTTTTAGATTTGGTATAGTTTATACTAGGGATGCTCAGACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACAGTTTTAGATTTGGTATAGTTTATACTAGGGATGCTCAGACTG  800

seq1  CATGGGGCCCACAAAGCCTGGATCCTCTCCTCTACCCAGAGCAGCATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGCCCACAAAGCCTGGATCCTCTCCTCTACCCAGAGCAGCATCAG  850

seq1  CATCACATCACTACCTCTGAACTACTTAGAACAGACAATTAGAAACTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATCACTACCTCTGAACTACTTAGAACAGACAATTAGAAACTCTG  900

seq1  GGAATAAAGCCCAACAGTGTGACTTTTAACAAGGCTACCTACCAGGTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAAGCCCAACAGTGTGACTTTTAACAAGGCTACCTACCAGGTGAT  950

seq1  ATTGATGCTTAGTAAAATTT-GAGAAAC-ATTGACATAAAATCTAAGGAG  998
      |||||||||||||||||||| ||||||| |||||||| ||||||||||||
seq2  ATTGATGCTTAGTAAAATTTGGAGAAACAATTGACATTAAATCTAAGGAG  1000

seq1  GAAATATTTAAGGGCACCTC-TTTGTGCAGGCCTGTAA-TCCCAGCTACT  1046
      ||||||||| | |||||||| |||||||| |||||||| |||||||||||
seq2  GAAATATTTTAAGGCACCTCTTTTGTGCA-GCCTGTAATTCCCAGCTACT  1049

seq1  CATGAGGCTGAGGCAGGAGAATCACGAGTTTGGTACCCATGGGGAC-TAT  1095
      ||||| ||||| ||| |||| |||||||||||||||| |||||||| |||
seq2  CATGA-GCTGA-GCA-GAGATTCACGAGTTTGGTACCAATGGGGACTTAT  1096

seq1  AGATTAAGTCCAAGGCCAGCCTGAGAAATTTAGGGACAGC  1135
      ||||||||||    | ||| ||  |||| |||||||||||
seq2  AGATTAAGTC---AGTCAGTCT--GAAAATTAGGGACAGC  1131

seq1: chr3_85832172_85833331
seq2: B6Ng01-254B02.g_67_1235 (reverse)

seq1  GAGTGCAGAGAAGA-CGCAGGAATGAACAGCAAGTGGTA-TCTGCACAGA  48
      ||||||||||||||  |||| | |||  ||  ||||||| ||||||||||
seq2  GAGTGCAGAGAAGAGTGCAGAATTGA--AGGCAGTGGTATTCTGCACAGA  48

seq1  ATCCAAGCCTCTTATATGTTATGATGCTCTGCATCGTT-ACG-TCGTGTA  96
      |||| || |||| ||||| ||||||||||||||||||| ||| |||||||
seq2  ATCC-AGGCTCTAATATGGTATGATGCTCTGCATCGTTAACGTTCGTGTA  97

seq1  CA-CACTTGCTC-ATGTATTCAACGTTAGCAACAAG-ACAAA-GAAT-CC  141
      || ||||||||| |||| ||| |||||||||||||| ||||| |||| ||
seq2  CACCACTTGCTCAATGT-TTC-ACGTTAGCAACAAGAACAAAGGAATCCC  145

seq1  AAAAACACTAGGTAGTAAATGGGGGCTCTTCTCC-AAGC-TCTCCTGGCT  189
      |||||||||||||||||| ||||||||||||||| |||| ||||||||||
seq2  AAAAACACTAGGTAGTAATTGGGGGCTCTTCTCCAAAGCTTCTCCTGGCT  195

seq1  GTCATAAGGT-GCTCACC-TCGAA-GGCTTCTGTGACGTTGGGGGGTTTC  236
      |||||||||| ||||||| ||||| |||||||||||||||||||||||||
seq2  GTCATAAGGTGGCTCACCTTCGAAGGGCTTCTGTGACGTTGGGGGGTTTC  245

seq1  TGAGCTTAAGAAAACTCAGAGTCTGGGGGAAGGAGTTCAGGACTGTGGAT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTAAGAAAACTCAGAGTCTGGGGGAAGGAGTTCAGGACTGTGGAT  295

seq1  TCAGTCTTTGAGTGACATGTCATCTAATGTAGGATAAGCATGGCTTGTGG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTTGAGTGACATGTCATCTAATGTAGGATAAGCATGGCTTGTGG  345

seq1  CGAGAGACAGTTTTGTTTGTGGACCATGGACGGGTTCATCAGATGAGAGC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGACAGTTTTGTTTGTGGACCATGGACGGGTTCATCAGATGAGAGC  395

seq1  CCCACCAGCTTTCTGATGTTAAGGGGAAAGCAGGGACTTGGGGGATCTTC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAGCTTTCTGATGTTAAGGGGAAAGCAGGGACTTGGGGGATCTTC  445

seq1  AACTCTAAAAATCTCCCCATTTAGTTCTCAAACTATGTTCTCTGAGACTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAAAAATCTCCCCATTTAGTTCTCAAACTATGTTCTCTGAGACTT  495

seq1  TACTTTCTCATCAATATGTCAAGGACTTTCACCACGGGGCTTTGGTGAAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTCATCAATATGTCAAGGACTTTCACCACGGGGCTTTGGTGAAG  545

seq1  GTGAAGAGGCCGCACGCACTTTAAGAATGTCCTAGCATAGTAGACAGCTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGGCCGCACGCACTTTAAGAATGTCCTAGCATAGTAGACAGCTG  595

seq1  TTGTGCTGATAAGCAGTTCACATTTCTTCCCGTGGTGTGGTGTAACCTGG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTGATAAGCAGTTCACATTTCTTCCCGTGGTGTGGTGTAACCTGG  645

seq1  GAGCCACAGAAGTGACTCTGCGTTTATCTGTACAGAGGCATTGTCCCTCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACAGAAGTGACTCTGCGTTTATCTGTACAGAGGCATTGTCCCTCA  695

seq1  GCACTGCATTGCTTTGTTGGTGTTAAACGTTTCTTGGTTTACATTTCCGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCATTGCTTTGTTGGTGTTAAACGTTTCTTGGTTTACATTTCCGA  745

seq1  AGTAATACCTCCAATGCTTTCTTTCCTAATCAGAACTATTGGAAGCTTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATACCTCCAATGCTTTCTTTCCTAATCAGAACTATTGGAAGCTTTT  795

seq1  GGATGATGATACACACTCTATGAATCATTCATAACCAACCGCTCCCACAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGATACACACTCTATGAATCATTCATAACCAACCGCTCCCACAA  845

seq1  GAAGACAAAAACAGGCAACACTGGCTTTGGAGAACTCCGGCCCGTGTATC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAAAAACAGGCAACACTGGCTTTGGAGAACTCCGGCCCGTGTATC  895

seq1  CCGCTATTTGCGTCGCACTGAGACTGTGCAAGCAGGCATTACAGGCTTTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTATTTGCGTCGCACTGAGACTGTGCAAGCAGGCATTACAGGCTTTG  945

seq1  TCATCTCTAAGCAGTGAGGTGTCAAAGCGGGTTAGTGCTGATAGGTGCTA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTAAGCAGTGAGGTGTCAAAGCGGGTTAGTGCTGATAGGTGCTA  995

seq1  AGTTCTGGATGGAAGAGGGAGAAGGCAGGTGTTACTTCTGCTCCTGGGAG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGGATGGAAGAGGGAGAAGGCAGGTGTTACTTCTGCTCCTGGGAG  1045

seq1  ATCAAAAAAGGTTTCACAGCAAACGTGATAGATGTCTCTTAGGCATCTCT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAAGGTTTCACAGCAAACGTGATAGATGTCTCTTAGGCATCTCT  1095

seq1  TCACACTCAACAGTTCTGAGAACTTAGCTCAGGTGTCTACACTGGGAAGA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTCAACAGTTCTGAGAACTTAGCTCAGGTGTCTACACTGGGAAGA  1145

seq1  ACAGCATGAGCCGGCTGAGAATTC  1160
      ||||||||||||||||||||||||
seq2  ACAGCATGAGCCGGCTGAGAATTC  1169

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information