BAC Information

Click to search

BAC

Clone NameB6Ng01-254N23
Chromosome3 (Build37)
Map Location 16,793,546 - 16,794,431
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664795, LOC381484, Ythdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254N23.bB6Ng01-254N23.g
ACCGA061226GA061227
length1,1441,167
definitionB6Ng01-254N23.b B6Ng01-254N23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctcaagaatcattcattgctggaacttcaacaccactggca
ggcctggttcatgcccatgctgcacctgccacctctgtcactggtgctgg
tgcatcctccaaaggggaactgctgctacctgccctgcacaggctgccca
aacctcccagcttctcttctaagagctgtgcttttcctgccagattgaga
cctgtagaacctgttcatcctggttctgcttcacctatcaggcagataga
ggacaaaggaggacactacctaaatggaacatcaacattactccaagtct
gtgggaataccatcaaaaagaaggaagacttaagagctggaataagggat
tggagtaatagagtgctgtcttcagggcataatatggtcattgccttatt
gaattttcaacccattcccccaagaagatttctacaagactgagtgctta
atgtttgtcatggatggagggaaggagccaatgaatcttcactcccttcc
aaggatatacaggcagtacacacacacacacacacacacacacacacaca
cacacaattgattgcagggagaaaattatattttcgtcattagtgtggtt
gcttacaagttggccatatttctgtaaaatatacctcatccatgctctta
ttactaacccaaattagagtcattgattcactaaactacattggatggca
ttgtgtctttggtctgttgtgacttatctgaaatgaataggtagatgttt
atatttgtttgtgcatgcagctcacctttctaactgggtttataatccat
ttttttgagttaagttctgtatttgatgtttcattttttctgcatatgtg
cacatttgaatgcagtccatttacatgaatatttttgctcccaatttgat
atcttggattactgcagccctttgctaacaatcaattgatttgtcactgt
ctactttagactatctttactatgcctctgattcaactgttgttctacaa
agatacaatcaaaggctttagtccaaacatgagaatctttagttttcctt
taagtgttttcatttccttgcacttattatagtgtaatgtgaacttcaat
ttaaaatggactatttttggaccggaacaggaatgatgtctttt
gaattcaaggcacaaacctaaacataataaagattatatacagaaagctg
ataggcaacattaaattaaatggagtgaaagttaaagccattccactaat
atcaggaacaatactaggctgtctgctctccaaatacttattcaatatag
tacttgaagttttgatggaacaataagacagagtatattgaggaaatata
aactggaaatgaagaaatcaaattaaataatgatattttatataagtgat
gccaaaagctctatcagggaactcctacatacttcataatatataacttc
agcaaagtggctggatacaaaattaaccatacaacaaagaaaaatattag
gaatactcctttagacaaatgataaagagatgacaaaaatgtaaggaaag
aaaacccttcataatagccagacatagtataaatcatcctagtgtaactc
tcaccaaccaagtgaaagacctgtatgaaaacttcaagtctctgaataaa
taaatttaggaatatatcagaagatgaaatgacctccccaacatgctcat
ggaaagatagtattaacatagcaaaaatggccatcttgccaaaaatcatc
tacagattcagtttaattcccatctaaattcaaaaataatctttaccaag
gtaggacggacaatactcaaattcttatgggaagacaaaaaaaaccacat
aatagctaaaagaaatcctaaacaataaaagatcttctggaggtatcacc
accctgagttcaaggtgtgctacagagaaatagtaataaaaaccacatag
tattgacatgaaaacagacaggttgatcaatagaataaaaacccagaagt
caaccaacatacctaaagatactggatttttgacaatagaaccaaactat
acagtggaaaaaagaaagcatcttcaacaaataatgctgaactaactgaa
tatttgcatgaagagaatgcaaatagattcctaaagagcatcgtgcaaca
actcagtctaagttatcaagactcaacataaatcatactctaaatttgat
ggaagagaaatggatactttgaacacatggcacacaggacactcagacct
taggatcacattatatgaacttctgacctgaatgttcttgtagcccaaag
aacacattatctcgacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16793546_16794431
seq2: B6Ng01-254N23.b_300_1186

seq1  GGAGGACACTACCTAAATGGAACATCAACATTACTCCAAGTCTGTGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACACTACCTAAATGGAACATCAACATTACTCCAAGTCTGTGGGAA  50

seq1  TACCATCAAAAAGAAGGAAGACTTAAGAGCTGGAATAAGGGATTGGAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCAAAAAGAAGGAAGACTTAAGAGCTGGAATAAGGGATTGGAGTA  100

seq1  ATAGAGTGCTGTCTTCAGGGCATAATATGGTCATTGCCTTATTGAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTGCTGTCTTCAGGGCATAATATGGTCATTGCCTTATTGAATTTT  150

seq1  CAACCCATTCCCCCAAGAAGATTTCTACAAGACTGAGTGCTTAATGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCATTCCCCCAAGAAGATTTCTACAAGACTGAGTGCTTAATGTTTG  200

seq1  TCATGGATGGAGGGAAGGAGCCAATGAATCTTCACTCCCTTCCAAGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATGGAGGGAAGGAGCCAATGAATCTTCACTCCCTTCCAAGGATA  250

seq1  TACAGGCAGTACACACACACACACACACACACACACACACACACACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCAGTACACACACACACACACACACACACACACACACACACACAA  300

seq1  TTGATTGCAGGGAGAAAATTATATTTTCGTCATTAGTGTGGTTGCTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCAGGGAGAAAATTATATTTTCGTCATTAGTGTGGTTGCTTACA  350

seq1  AGTTGGCCATATTTCTGTAAAATATACCTCATCCATGCTCTTATTACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCCATATTTCTGTAAAATATACCTCATCCATGCTCTTATTACTAA  400

seq1  CCCAAATTAGAGTCATTGATTCACTAAACTACATTGGATGGCATTGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATTAGAGTCATTGATTCACTAAACTACATTGGATGGCATTGTGTC  450

seq1  TTTGGTCTGTTGTGACTTATCTGAAATGAATAGGTAGATGTTTATATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTGTTGTGACTTATCTGAAATGAATAGGTAGATGTTTATATTTG  500

seq1  TTTGTGCATGCAGCTCACCTTTCTAACTGGGTTTATAATCCA-TTTTTTG  549
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTGTGCATGCAGCTCACCTTTCTAACTGGGTTTATAATCCATTTTTTTG  550

seq1  AGTTAAGTTCTGTATTTGATGTTTCA-TTTTTCTGCATATGTGCACATTT  598
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTTAAGTTCTGTATTTGATGTTTCATTTTTTCTGCATATGTGCACATTT  600

seq1  GAATGCAGTCCATTTACATGAATATTTTTGCTCCCAA-TTGATATCTTGG  647
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAATGCAGTCCATTTACATGAATATTTTTGCTCCCAATTTGATATCTTGG  650

seq1  ATTACTGCAGCCCTTTGCTAACAATCAATTGATTTGTCACTGTCTACTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGCAGCCCTTTGCTAACAATCAATTGATTTGTCACTGTCTACTTT  700

seq1  AGACTATCTTTACTATGCCTCTGATTCAACTGTTGTTCTACAAAGATACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATCTTTACTATGCCTCTGATTCAACTGTTGTTCTACAAAGATACA  750

seq1  ATCAAAGGCTTTAGTCCAAACATGAGAATCTTTAATTTTCCTTTAAGTG-  796
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  ATCAAAGGCTTTAGTCCAAACATGAGAATCTTTAGTTTTCCTTTAAGTGT  800

seq1  TTTCATTTCCTTGCAACTTATTATAAGTGGTAAT-TTAACTTCAA-TTAA  844
      |||||||||||||| ||||||||| ||| ||||| | |||||||| ||||
seq2  TTTCATTTCCTTGC-ACTTATTAT-AGT-GTAATGTGAACTTCAATTTAA  847

seq1  AATTGCCTATTTTGGGACCCAGAAACAAGAATGATGTCTTTT  886
      ||| | ||||||| |||||  | |||| ||||||||||||||
seq2  AATGGACTATTTTTGGACC--GGAACAGGAATGATGTCTTTT  887