BAC Information

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BAC

Clone NameB6Ng01-255B06
Chromosome3 (Build37)
Map Location 117,874,990 - 118,028,527
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255B06.bB6Ng01-255B06.g
ACCGA061375GA061376
length1,1971,114
definitionB6Ng01-255B06.b B6Ng01-255B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,874,990 - 117,876,210)(118,027,407 - 118,028,527)
sequence
gaattcaatcctcataaaaatttcaatgatattctttaacaaaatagaag
ataatatcctgaaattcttatgggaataaaaatgaccacaagtaggcaag
ataatcctgagcagaagaaacgctatgtgcaaggcaattctcaaccccga
accatctgagagagccatagtgaccaaaatacaatggcactagcacaaaa
cagacacaaatttaatagaagtgattcttaaaagcccacaaagttacatc
catctgactcttgacaagggtaagataattgagcgtggggaaacaggtga
taagtgatggggaatggatacccgcatgcagaagtctaaagggtctctca
ctcgggacaaaaaaaaaaaaaaccacagtggacacaaaaccttgattcaa
gaaccacagctttggaatactggagaaaataattcaagctacgggaataa
gcaatgactttggaaaaggtctccagggaatctgctagggaatctgttga
gttattataaaccatattttcctagttattttatcccatattggtaattt
gtaaaatttatttgattctgtgtgtaagccatctttctgtctatatttta
cctttataacttatttgatatcaacaattgcaagtaccttaatgaatgtt
tatttaataagattgctctactgcttcaagttttcaagtgttagctttca
tttgactaccgtagttcagagcagtcttttttcatttcaggtttgccatt
cctttatacaagctcattgtatacacagaacactgttaaggaaattctat
gctttttggttcttgaagtgacctaccagagagcttttcattggcttctc
atggttactagaggtccctcaatgtccaaaacgaaatttccatgtttttt
ttgagaccaaacaattaattagagttgggcttgtttaattcattaattct
ttgttcttgagtgtgctctctctgggaagctattttgtcatcagcatcaa
caaaatgcctaacttaagacagctttcatatatactttttttttctgcag
gtagagactgatgagtctggggggagggtgacagtataaagcctggagaa
catctcctcacaatctgactacctactagacacgcttggtcttgcttcgc
atgattgagtgccttagtcagtgattgggaggattctgcctttccaa
gaattcagcgtgaggtctacatctgtagaaagagctcatgctctggatta
gcttcattacacagctggacttgcatagacatggcaggagaacagcgagg
actctctcaggaatgggcacagaaagatgtagtgcgctgagatgaattct
cctttaaataaaaacgaagtcagattttagaatgaaattctctagtgctg
tcaaactgtttgaaactggatttggcagttgtcctttcaaactgttattt
cagagcacgtgtcccagaagggacagctaagaatgcttgtcatatttgaa
ctctttccagaaccattcagcaggatactggcagtccacttgttcgtgtt
aattatttctgccctgattgcctggcaacacataacatgggaagtattat
attttgctatttgagaatgcttccagcagaatgcagggagaaaatggaat
acaaagtcggctggaaatgtaacttaataagttaggtgtgtattttgatt
gaaaatttgttacagatgaagtggtttgtaatcccatgattgtgttaacc
acagtttcagagagcttgagggtgtctcagtggatattggtagaatgaaa
ctaatgatagatcttaatggccagcacaccacaatcgatgaacatgaatg
gtctcccttgtaggcagaatggatgcatatgtgtgtgtgaccatgtgtta
cacataggtatgatgggcagctgctcatgcaatgggatttgtttacctgt
gcctctctggtggggttgggaagaagagagctttgaatgacagactttat
agcactctataatggtttttttgtgtgtgtgtgtgtgtgataatgtttta
ttaccttgaagtcacataggcaccaccagtcccaacaacctcctttattt
gcattctgcaaagtgatgggcaaataggaatacatatgactcacacaggc
atatgactcaagcccagatcttttaatgtggccccttaggactagtccct
catgcttacctcacaaggtgcttgttccaaagggcattctttctagctat
aagcccacattatttcatctgtgggattctctcttctctccggctcctct
ttctttccatcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117874990_117876210
seq2: B6Ng01-255B06.b_47_1243

seq1  GAATTCAATCCTCATAAAAATTTCAATGATATTCTTTAACAAAATAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTCATAAAAATTTCAATGATATTCTTTAACAAAATAGAAG  50

seq1  ATAATATCCTGAAATTCTTATGGGAATAAAAATGACCACAAGTAGGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCCTGAAATTCTTATGGGAATAAAAATGACCACAAGTAGGCAAG  100

seq1  ATAATCCTGAGCAGAAGAAACGCTATGTGCAAGGCAATTCTCAACCCCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTGAGCAGAAGAAACGCTATGTGCAAGGCAATTCTCAACCCCGA  150

seq1  ACCATCTGAGAGAGCCATAGTGACCAAAATACAATGGCACTAGCACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGAGAGAGCCATAGTGACCAAAATACAATGGCACTAGCACAAAA  200

seq1  CAGACACAAATTTAATAGAAGTGATTCTTAAAAGCCCACAAAGTTACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAAATTTAATAGAAGTGATTCTTAAAAGCCCACAAAGTTACATC  250

seq1  CATCTGACTCTTGACAAGGGTAAGATAATTGAGCGTGGGGAAACAGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACTCTTGACAAGGGTAAGATAATTGAGCGTGGGGAAACAGGTGA  300

seq1  TAAGTGATGGGGAATGGATACCCGCATGCAGAAGTCTAAAGGGTCTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGATGGGGAATGGATACCCGCATGCAGAAGTCTAAAGGGTCTCTCA  350

seq1  CTCGGGACAAAAAAAAAAAAAACCACAGTGGACACAAAACCTTGATTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGACAAAAAAAAAAAAAACCACAGTGGACACAAAACCTTGATTCAA  400

seq1  GAACCACAGCTTTGGAATACTGGAGAAAATAATTCAAGCTACGGGAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACAGCTTTGGAATACTGGAGAAAATAATTCAAGCTACGGGAATAA  450

seq1  GCAATGACTTTGGAAAAGGTCTCCAGGGAATCTGCTAGGGAATCTGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGACTTTGGAAAAGGTCTCCAGGGAATCTGCTAGGGAATCTGTTGA  500

seq1  GTTATTATAAACCATATTTTCCTAGTTATTTTATCCCATATTGGTAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTATAAACCATATTTTCCTAGTTATTTTATCCCATATTGGTAATTT  550

seq1  GTAAAATTTATTTGATTCTGTGTGTAAGCCATCTTTCTGTCTATATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTATTTGATTCTGTGTGTAAGCCATCTTTCTGTCTATATTTTA  600

seq1  CCTTTATAACTTATTTGATATCAACAATTGCAAGTACCTTAATGAATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATAACTTATTTGATATCAACAATTGCAAGTACCTTAATGAATGTT  650

seq1  TATTTAATAAGATTGCTCTACTGCTTCAAGTTTTCAAGTGTTAGCTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATAAGATTGCTCTACTGCTTCAAGTTTTCAAGTGTTAGCTTTCA  700

seq1  TTTGACTACCGTAGTTCAGAGCAGTCTTTTTTCATTTCAGGTTTGCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTACCGTAGTTCAGAGCAGTCTTTTTTCATTTCAGGTTTGCCATT  750

seq1  CCTTTATACAAGCTCATTGTATACACAGAACACTGTTAAGGAAATTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATACAAGCTCATTGTATACACAGAACACTGTTAAGGAAATTCTAT  800

seq1  GCTTTTTGGTTCTTGAAGTGACCTACCAGAGAGCTTTTCATTGGCTTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTGGTTCTTGAAGTGACCTACCAGAGAGCTTTTCATTGGCTTCTC  850

seq1  ATGGTTACTAGAGGTCCCTCAATGTCCAAAACGAAATTTCCATGTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTACTAGAGGTCCCTCAATGTCCAAAACGAAATTTCCATGTTTTTT  900

seq1  TTGAGACCAAACAAATTAATTAGAGTT-GGCTTGTTTAATTCATTAATTC  949
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  TTGAGACCAAAC-AATTAATTAGAGTTGGGCTTGTTTAATTCATTAATTC  949

seq1  TTTGTTCTTGAGTGTGCTCCTCTCTGGGAAGCTATTTTGTTCATCCAGCA  999
      |||||||||||||||||| |||||||||||||||||||| |||| |||||
seq2  TTTGTTCTTGAGTGTGCT-CTCTCTGGGAAGCTATTTTG-TCAT-CAGCA  996

seq1  TCAACAAAAATGCCTAACTTAAGGACAGCCTTTCATATATAACCTTTTTT  1049
      ||||| |||||||||||||||| ||||| ||||||||||| || ||||||
seq2  TCAAC-AAAATGCCTAACTTAA-GACAG-CTTTCATATAT-ACTTTTTTT  1042

seq1  TTCTGGCAGGTAGAGACTGAATTGAGTCT-GGGGGAGGGTGACAGTATAA  1098
      |||| |||||||||||||||  ||||||| |||||||||||||||||| |
seq2  TTCT-GCAGGTAGAGACTGA--TGAGTCTGGGGGGAGGGTGACAGTAT-A  1088

seq1  AATTCTGGAGACAATCTCCCTCAC-ATCTGACTTACCTACTAGGACCACG  1147
      ||  |||||||  |||| |||||| ||||||| ||||||||||   ||| 
seq2  AAGCCTGGAGAACATCT-CCTCACAATCTGAC-TACCTACTAG--ACAC-  1133

seq1  GCTTTGTGTTCCTTTGCTTCTGCAATGAATGAAGTTGCTCTTAGTCACGT  1197
      |||| || || ||| ||       |||| |||   ||| |||||||| ||
seq2  GCTTGGTCTTGCTTCGC-------ATGATTGA--GTGC-CTTAGTCA-GT  1172

seq1  GGTT-GGAGGGTTCTGCCTTTCAAA  1221
      | || ||||| ||||||||||| ||
seq2  GATTGGGAGGATTCTGCCTTTCCAA  1197

seq1: chr3_118027407_118028527
seq2: B6Ng01-255B06.g_67_1180 (reverse)

seq1  AAGGATGGAAAGAAAGAGGAGCGGAAGAGAGGAAGGAGAAATTACCACAG  50
      |||||||||||||||||||||| | ||||| ||  |||||  | ||||| 
seq2  AAGGATGGAAAGAAAGAGGAGCCGGAGAGAAGA--GAGAA--TCCCACA-  45

seq1  GATGAAATAATGTGGCTTTATAGGCTAAGAAGATGGCCCTTTGGGGAAC-  99
      |||||||||||||||  ||||| ||||  ||||  |||||||  ||||| 
seq2  GATGAAATAATGTGGGCTTATA-GCTAGAAAGAATGCCCTTT--GGAACA  92

seq1  AGCA-CTTGTTGAGTAAGCATGAGGGACTTAGTCCTTAGGGGCCACATTA  148
      |||| |||||   ||||||||||||||| ||||||| |||||||||||||
seq2  AGCACCTTGTGAGGTAAGCATGAGGGAC-TAGTCCTAAGGGGCCACATTA  141

seq1  AAAGATCTGGGCTTGAGTTCATATGCTTGTGTGAGTCATATGTATTCCTA  198
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  AAAGATCTGGGCTTGAG-TCATATGCCTGTGTGAGTCATATGTATTCCTA  190

seq1  TTTGCCCATCACTTTGCAGAATGCAAAT-AAGGAGGTTGTTGGGACTGGT  247
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTGCCCATCACTTTGCAGAATGCAAATAAAGGAGGTTGTTGGGACTGGT  240

seq1  GGTGCCTATGTGACTTCAAGGTAATAAAACATTATCACACACACACACAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTATGTGACTTCAAGGTAATAAAACATTATCACACACACACACAC  290

seq1  ACAAAAAAACCATTATAGAGTGCTATAAAGTCTGTCATTCAAAGCTCTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACCATTATAGAGTGCTATAAAGTCTGTCATTCAAAGCTCTCT  340

seq1  TCTTCCCAACCCCACCAGAGAGGCACAGGTAAACAAATCCCATTGCATGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAACCCCACCAGAGAGGCACAGGTAAACAAATCCCATTGCATGA  390

seq1  GCAGCTGCCCATCATACCTATGTGTAACACATGGTCACACACACATATGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCCCATCATACCTATGTGTAACACATGGTCACACACACATATGC  440

seq1  ATCCATTCTGCCTACAAGGGAGACCATTCATGTTCATCGATTGTGGTGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTCTGCCTACAAGGGAGACCATTCATGTTCATCGATTGTGGTGTG  490

seq1  CTGGCCATTAAGATCTATCATTAGTTTCATTCTACCAATATCCACTGAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATTAAGATCTATCATTAGTTTCATTCTACCAATATCCACTGAGA  540

seq1  CACCCTCAAGCTCTCTGAAACTGTGGTTAACACAATCATGGGATTACAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCAAGCTCTCTGAAACTGTGGTTAACACAATCATGGGATTACAAA  590

seq1  CCACTTCATCTGTAACAAATTTTCAATCAAAATACACACCTAACTTATTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCATCTGTAACAAATTTTCAATCAAAATACACACCTAACTTATTA  640

seq1  AGTTACATTTCCAGCCGACTTTGTATTCCATTTTCTCCCTGCATTCTGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATTTCCAGCCGACTTTGTATTCCATTTTCTCCCTGCATTCTGCT  690

seq1  GGAAGCATTCTCAAATAGCAAAATATAATACTTCCCATGTTATGTGTTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATTCTCAAATAGCAAAATATAATACTTCCCATGTTATGTGTTGC  740

seq1  CAGGCAATCAGGGCAGAAATAATTAACACGAACAAGTGGACTGCCAGTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATCAGGGCAGAAATAATTAACACGAACAAGTGGACTGCCAGTAT  790

seq1  CCTGCTGAATGGTTCTGGAAAGAGTTCAAATATGACAAGCATTCTTAGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGAATGGTTCTGGAAAGAGTTCAAATATGACAAGCATTCTTAGCT  840

seq1  GTCCCTTCTGGGACACGTGCTCTGAAATAACAGTTTGAAAGGACAACTGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTCTGGGACACGTGCTCTGAAATAACAGTTTGAAAGGACAACTGC  890

seq1  CAAATCCAGTTTCAAACAGTTTGACAGCACTAGAGAATTTCATTCTAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCAGTTTCAAACAGTTTGACAGCACTAGAGAATTTCATTCTAAAA  940

seq1  TCTGACTTCGTTTTTATTTAAAGGAGAATTCATCTCAGCGCACTACATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTCGTTTTTATTTAAAGGAGAATTCATCTCAGCGCACTACATCT  990

seq1  TTCTGTGCCCATTCCTGAGAGAGTCCTCGCTGTTCTCCTGCCATGTCTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCCCATTCCTGAGAGAGTCCTCGCTGTTCTCCTGCCATGTCTAT  1040

seq1  GCAAGTCCAGCTGTGTAATGAAGCTAATCCAGAGCATGAGCTCTTTCTAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCCAGCTGTGTAATGAAGCTAATCCAGAGCATGAGCTCTTTCTAC  1090

seq1  AGATGTAGACCTCACGCTGAATTC  1121
      ||||||||||||||||||||||||
seq2  AGATGTAGACCTCACGCTGAATTC  1114