BAC Information

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BAC

Clone NameB6Ng01-255F21
Chromosome7 (Build37)3 (Build37)
Map Location 135,784,706 - 135,785,851151,076,546 - 151,076,886
singlet/doubletsingletsinglet
Overlap geneInpp5f
Upstream geneBcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030
Downstream geneLOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a, Brwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255F21.bB6Ng01-255F21.g
ACCGA061590GA061591
length1,127967
definitionB6Ng01-255F21.b B6Ng01-255F21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(135,784,706 - 135,785,851)(151,076,546 - 151,076,886)
sequence
gaattctctaggatggactttaatctagtatagctggctttatttattgt
tttttaaagaattaattatttttggttatgtataatttatgcaagtatgt
atatctacaggtggataccaatgcccaaaaagtccagaagcattggatcc
cctggagctggtggctgttgagtcacctgacatgagttctggaaatctaa
ctcaggtcctctgcacggcctgagtatgtgctctcaactgctgagccacc
tctagcccaacaagtaatattatttaaaaaaaacaaaaaccttaaagaca
aaggtacaaaggaagggaagcccacgtgaagacagggaccacagccatct
ataagccaaggacagaggtcctggaagaaaccagtcctgctagctcttta
gtctccagcattataggaagatgaaattctgttgtttaatgcctcccaca
acctagcgaacctgtatcgttctagaagtcacgaaagctgctgctatatt
ccttggagtccagagttcagtgacaaccatgagcagcagcacagctcacc
cacgccacttttagactgacaatgacatctgttcaaataaaatcatgttc
ccgtcacactaggcaagaacaggagtgcacgcattaatatgtagagtcag
taggaggaaagagaaaaggggagcttacatacagatgtcttagttccctc
atctcctctcatcacccccgaatgataagatatccccatgagaaaatgtc
cccaaaataccagctcaattctgacacataaggagcgcagctccttccgg
ccagtccgactctgagcaagacagaggagggatgaggcagcgtggaggaa
gaggatgaaagggaagagaagggcagatctccttccctcagtgaggagca
gggtggagcagcacagggaagacaggactgtgggaacatgggagagcaga
gaaagcacaacagaggcccagatctccatctgctctcctatggcttctct
tttaaaaccaaatctgtagtggtcatgacgggacagatatggataagact
gcgtacatatgagagacttgttttacctctcgtttcattttatacttctt
cccaagtactctcctctgactccctct
gaattcagttgcaaattagcaatgatcaaacccagggtctggccacccgg
agtgggggaagtggctttgagaatcaacagaaaaactgttacttctcagg
aaacagtggtaagagccagaataactggtcacattaaaggaaagagaaga
gtcattataaaagtcattctcctttgattgatttttccacagtctctatg
ttctctgttccacaaggtctaaaagcttgaagcaagggagcttagcttgt
ctaatccgggacatagacaagcaaaggtgtgtcaagaatatacacccaac
acagctttcctgtcacattgtcagggtactcagcaaggagttctttggca
tccaattttaaatttttaaaaatcaaaagcatgatttaaataatgtgcac
agggatataattctccccttttttgttttttaagaagataatgttgggct
ggtgagatggctcagtgggtaagagcacccgactgctcttccgaaggtcc
gaagttcaaatcccagcaaccacatggtggctcacaaccatctgtaacat
gatctgacgccctcttctggagtgtctgaagacagctacagtgtacttac
atataataaataaataaatctttaaaaaaaaaaaagtaaaattataaaaa
aaagaagataatgttttagccgggcgtggtggcacatgcctttaatccca
gcactcgggaggcagaggcaggaggatttctgagtttgaggccagcctgg
tctacagagtgagttccaggacagccagggctacacagaggaaaccctgt
ctcgaaaaccaaaaaaaaaaaaaaaaaaaaaaaaagaagatattgtttta
aagttctacaataccttgtccttgagaaatataaaaaaatctcagtaaca
tgggtaacattaattgttcacaaaacatctcaaatgcttgactgtaatag
ccagttccattatctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_135784706_135785851
seq2: B6Ng01-255F21.b_45_1171 (reverse)

seq1  AGAGGGAGTCAGGAGGAGAGTAAACTGGGGAAAGAAAGTATAAAAATGGA  50
      ||||||||||| |||||||||  ||| |||||   ||||||||||   ||
seq2  AGAGGGAGTCA-GAGGAGAGT--ACTTGGGAA--GAAGTATAAAA--TGA  43

seq1  AACGGAGA-GTAAAACAAGTCTCTCAATTATTGTACGCCAGTCTTATCCA  99
      ||| |||| |||||||||||||||||  || |||||| ||||||||||||
seq2  AAC-GAGAGGTAAAACAAGTCTCTCA--TA-TGTACG-CAGTCTTATCCA  88

seq1  TATCTTGTCCCGGTCATGGCCACTTAACAGATTTGGTTTTAAAAGAAGGA  149
      |||| |||||| |||||| |||||  ||||||||||||||||||||  ||
seq2  TATC-TGTCCC-GTCATGACCACT--ACAGATTTGGTTTTAAAAGA--GA  132

seq1  AGCCATAGGAGAAGCAGATGGAGATCTGGGCCCTCTGTTGTGCTTTCTCT  199
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  AGCCATAGGAG-AGCAGATGGAGATCTGGG-CCTCTGTTGTGCTTTCTCT  180

seq1  GCTCTCCCATGTTCCCACAGTCCTGTCTTCCCTGTGCTGCTCCACCCTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCATGTTCCCACAGTCCTGTCTTCCCTGTGCTGCTCCACCCTGC  230

seq1  TCCTCACTGAGGGAAGGAGATCTGCCCTTCTCTTCCCTTTCATCCTCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTGAGGGAAGGAGATCTGCCCTTCTCTTCCCTTTCATCCTCTTC  280

seq1  CTCCACGCTGCCTCATCCCTCCTCTGTCTTGCTCAGAGTCGGACTGGCCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGCTGCCTCATCCCTCCTCTGTCTTGCTCAGAGTCGGACTGGCCG  330

seq1  GAAGGAGCTGCGCTCCTTATGTGTCAGAATTGAGCTGGTATTTTGGGGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCTGCGCTCCTTATGTGTCAGAATTGAGCTGGTATTTTGGGGAC  380

seq1  ATTTTCTCATGGGGATATCTTATCATTCGGGGGTGATGAGAGGAGATGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCATGGGGATATCTTATCATTCGGGGGTGATGAGAGGAGATGAG  430

seq1  GGAACTAAGACATCTGTATGTAAGCTCCCCTTTTCTCTTTCCTCCTACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAAGACATCTGTATGTAAGCTCCCCTTTTCTCTTTCCTCCTACTG  480

seq1  ACTCTACATATTAATGCGTGCACTCCTGTTCTTGCCTAGTGTGACGGGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACATATTAATGCGTGCACTCCTGTTCTTGCCTAGTGTGACGGGAA  530

seq1  CATGATTTTATTTGAACAGATGTCATTGTCAGTCTAAAAGTGGCGTGGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTTATTTGAACAGATGTCATTGTCAGTCTAAAAGTGGCGTGGGT  580

seq1  GAGCTGTGCTGCTGCTCATGGTTGTCACTGAACTCTGGACTCCAAGGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGCTGCTGCTCATGGTTGTCACTGAACTCTGGACTCCAAGGAAT  630

seq1  ATAGCAGCAGCTTTCGTGACTTCTAGAACGATACAGGTTCGCTAGGTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGCAGCTTTCGTGACTTCTAGAACGATACAGGTTCGCTAGGTTGT  680

seq1  GGGAGGCATTAAACAACAGAATTTCATCTTCCTATAATGCTGGAGACTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCATTAAACAACAGAATTTCATCTTCCTATAATGCTGGAGACTAA  730

seq1  AGAGCTAGCAGGACTGGTTTCTTCCAGGACCTCTGTCCTTGGCTTATAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAGCAGGACTGGTTTCTTCCAGGACCTCTGTCCTTGGCTTATAGA  780

seq1  TGGCTGTGGTCCCTGTCTTCACGTGGGCTTCCCTTCCTTTGTACCTTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGGTCCCTGTCTTCACGTGGGCTTCCCTTCCTTTGTACCTTTGT  830

seq1  CTTTAAGGTTTTTGTTTTTTTTAAATAATATTACTTGTTGGGCTAGAGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGTTTTTGTTTTTTTTAAATAATATTACTTGTTGGGCTAGAGGT  880

seq1  GGCTCAGCAGTTGAGAGCACATACTCAGGCCGTGCAGAGGACCTGAGTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCAGTTGAGAGCACATACTCAGGCCGTGCAGAGGACCTGAGTTA  930

seq1  GATTTCCAGAACTCATGTCAGGTGACTCAACAGCCACCAGCTCCAGGGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAGAACTCATGTCAGGTGACTCAACAGCCACCAGCTCCAGGGGA  980

seq1  TCCAATGCTTCTGGACTTTTTGGGCATTGGTATCCACCTGTAGATATACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCTTCTGGACTTTTTGGGCATTGGTATCCACCTGTAGATATACA  1030

seq1  TACTTGCATAAATTATACATAACCAAAAATAATTAATTCTTTAAAAAACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCATAAATTATACATAACCAAAAATAATTAATTCTTTAAAAAACA  1080

seq1  ATAAATAAAGCCAGCTATACTAGATTAAAGTCCATCCTAGAGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAGCCAGCTATACTAGATTAAAGTCCATCCTAGAGAATTC  1127

seq1: chr3_151076546_151076886
seq2: B6Ng01-255F21.g_512_899 (reverse)

seq1  TTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTT-CTCGGT  49
      ||||||||||||||||||||||||| ||||||||||||||||| ||| ||
seq2  TTTTTTTTTTTTTTTTTTTTTTTGG-TTTTCGAGACAGGGTTTCCTCTGT  49

seq1  ATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAA  99
       |||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  GTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAA  99

seq1  CTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTG  149
      ||||||||||| |||||||||||||||| |||||||||||||||||| ||
seq2  CTCAGAAATCCTCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATG  149

seq1  TGCCACCACACCCGGC----------------------------------  165
      ||||||||| ||||||                                  
seq2  TGCCACCACGCCCGGCTAAAACATTATCTTCTTTTTTTTATAATTTTACT  199

seq1  ------------AAGATTTATTTATTTACTATATGTAAATACACTGTAGC  203
                  |||||||||||||||| ||||||||| |||||||||||
seq2  TTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGC  249

seq1  TGTCTTCAGACACACCAGAAAAGGGCATCAGATCTCATTACAGATGGTTG  253
      ||||||||||||| |||||| ||||| |||||||   |||||||||||||
seq2  TGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCATGTTACAGATGGTTG  299

seq1  TGAGCCACCATGCGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGC  303
      |||||||||||| |||||||||||||||||||  ||||||| ||||||||
seq2  TGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCGGAAGAGC  349

seq1  AGAC-AGTGTTCTTACCCGCTGAGCCATCTCACCAGCCC  341
      || |  ||| |||||||| ||||||||||||||||||||
seq2  AGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCC  388