BAC Information

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BAC

Clone NameB6Ng01-255J01
Chromosome3 (Build37)
Map Location 119,335,157 - 119,456,321
singlet/doubletdoublet
Overlap geneLOC100043278, Ptbp2
Upstream geneDpyd, LOC100043275
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255J01.bB6Ng01-255J01.g
ACCGA061742GA061743
length1,093470
definitionB6Ng01-255J01.b B6Ng01-255J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,455,221 - 119,456,321)(119,335,157 - 119,335,626)
sequence
gaattcaatggtaattttaatttacttgtgttctttagtcattggacagt
tttggtatgaagttgaattttagtatttttgctaattattattctacata
gactgcacatggcttgatggtaaccttagttgatggtttaatgatttttc
tcctttccattgaaagcctaattttagcttttcaagcattcagatttact
cacctatgttttaaagtatttttaacttttcataggaatccatttttttc
atactgattataaagaatatttctgtatgtctttcagccaacggtaacga
tagtaagaaatttaaaggagaagataaaatggatggggctccctctcgtg
tacttcacattcgaaagttacctggtgaagtgactgaaacagaagttatt
gctttaggtttaccttttggtaaggtgactaacatccttatgctgaaagg
aaaaaaccaggtacagtgcacaagcgttactactagcatgttaaattaca
cagaaggaggcttatctgtcacctaaaggattcattgtctgacaaaatta
aaagaagttcagtttcctgtttgttttgttttgtaatagcagaaaccagg
ggtactagtagaatctattacatgagtttattcatctggtagcattagaa
atcaggcttaaattttggatgctcattcattaacagtagcagtaggacct
attcatattaaaaatgacattatgttttaaaatttccaaaaattttattt
agaagaatttatttaatattagaaaattaatattctctaaacgtagctaa
tataataattattccgtccttttaatttttcagttgtattttttatatga
gacctttaggatagtaacataaaattttggtgctagaaaatgcttatttt
ctctagtttttttaaaaaacagatttatgggatgtagtaagttgtagatg
gaaccacaaatcgaaggtattacttgaatcaaccccaatattattttaaa
attagtgattctagacatgttttattatttcaatgatatgtcttgtttga
gaatacgcgcattgtgagctaaggccaagcagaagccctgtgg

gaattcacagggtagctcacagcctgtgactccagctccccagaatctga
cgtgctcttctgaccttctcatgcacttgcctgcatgctgtgcacaagca
aacactcaggaccccacacacgcacataaagaacgttatgacagagatgg
ttaaaataatatataattataccatttattcagtgataatatttattggt
tagtttaaaggaatagtatacaatattttcaaacacccattgagcatttc
taaacattctaaaaatcccaaaattttatttaatcagcaatatctaaaga
cacaaaattttcctttggttgttaaaaaaagttgcaaaaaataataaaca
aacaaataaataaataaatattgcatcatctttgttaaacttttaaatgt
acatatagcacaaaactatgtatgtgagagagtgtatgtgtgtgtgtgtg
tgtgtgtgtgtgtgcgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119455221_119456321
seq2: B6Ng01-255J01.b_43_1135 (reverse)

seq1  CCACA-GGCTTCTGCTGGGGCCTTAGCTCAC-ATGCGCGTATCCTCAAAC  48
      ||||| ||||||||||  ||||||||||||| |||||||||| |||||||
seq2  CCACAGGGCTTCTGCT-TGGCCTTAGCTCACAATGCGCGTATTCTCAAAC  49

seq1  AAGACATATCATTTGAAAATAATAAAACATGTCTTAGAAATCACTTAATT  98
      |||||||||||||   ||||||||||||||||| ||| |||||||  | |
seq2  AAGACATATCATT--GAAATAATAAAACATGTC-TAG-AATCACT--AAT  93

seq1  TTTAAAATAATATTGGGGTTGATTCAAGTAATACCCTTCGATTTTGTTGG  148
      ||||||||||||||||||||||||||||||||| ||||||||||   |||
seq2  TTTAAAATAATATTGGGGTTGATTCAAGTAATA-CCTTCGATTT--GTGG  140

seq1  TTCCATCTACAACTTACTACATCCCATAAATCTGTTTTTTAAAAAAACTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTACAACTTACTACATCCCATAAATCTGTTTTTTAAAAAAACTA  190

seq1  GAGAAAATAAGCATTTTCTAGCACCAAAATTTTATGTTACTATCCTAAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATAAGCATTTTCTAGCACCAAAATTTTATGTTACTATCCTAAAG  240

seq1  GTCTCATATAAAAAATACAACTGAAAAATTAAAAGGACGGAATAATTATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATATAAAAAATACAACTGAAAAATTAAAAGGACGGAATAATTATT  290

seq1  ATATTAGCTACGTTTAGAGAATATTAATTTTCTAATATTAAATAAATTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCTACGTTTAGAGAATATTAATTTTCTAATATTAAATAAATTCT  340

seq1  TCTAAATAAAATTTTTGGAAATTTTAAAACATAATGTCATTTTTAATATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAAAATTTTTGGAAATTTTAAAACATAATGTCATTTTTAATATG  390

seq1  AATAGGTCCTACTGCTACTGTTAATGAATGAGCATCCAAAATTTAAGCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTCCTACTGCTACTGTTAATGAATGAGCATCCAAAATTTAAGCCT  440

seq1  GATTTCTAATGCTACCAGATGAATAAACTCATGTAATAGATTCTACTAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTAATGCTACCAGATGAATAAACTCATGTAATAGATTCTACTAGT  490

seq1  ACCCCTGGTTTCTGCTATTACAAAACAAAACAAACAGGAAACTGAACTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGGTTTCTGCTATTACAAAACAAAACAAACAGGAAACTGAACTTC  540

seq1  TTTTAATTTTGTCAGACAATGAATCCTTTAGGTGACAGATAAGCCTCCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTGTCAGACAATGAATCCTTTAGGTGACAGATAAGCCTCCTT  590

seq1  CTGTGTAATTTAACATGCTAGTAGTAACGCTTGTGCACTGTACCTGGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAATTTAACATGCTAGTAGTAACGCTTGTGCACTGTACCTGGTTT  640

seq1  TTTCCTTTCAGCATAAGGATGTTAGTCACCTTACCAAAAGGTAAACCTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCAGCATAAGGATGTTAGTCACCTTACCAAAAGGTAAACCTAA  690

seq1  AGCAATAACTTCTGTTTCAGTCACTTCACCAGGTAACTTTCGAATGTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAACTTCTGTTTCAGTCACTTCACCAGGTAACTTTCGAATGTGAA  740

seq1  GTACACGAGAGGGAGCCCCATCCATTTTATCTTCTCCTTTAAATTTCTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACGAGAGGGAGCCCCATCCATTTTATCTTCTCCTTTAAATTTCTTA  790

seq1  CTATCGTTACCGTTGGCTGAAAGACATACAGAAATATTCTTTATAATCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGTTACCGTTGGCTGAAAGACATACAGAAATATTCTTTATAATCAG  840

seq1  TATGAAAAAAATGGATTCCTATGAAAAGTTAAAAATACTTTAAAACATAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAAAATGGATTCCTATGAAAAGTTAAAAATACTTTAAAACATAG  890

seq1  GTGAGTAAATCTGAATGCTTGAAAAGCTAAAATTAGGCTTTCAATGGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAAATCTGAATGCTTGAAAAGCTAAAATTAGGCTTTCAATGGAAA  940

seq1  GGAGAAAAATCATTAAACCATCAACTAAGGTTACCATCAAGCCATGTGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAATCATTAAACCATCAACTAAGGTTACCATCAAGCCATGTGCA  990

seq1  GTCTATGTAGAATAATAATTAGCAAAAATACTAAAATTCAACTTCATACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTAGAATAATAATTAGCAAAAATACTAAAATTCAACTTCATACC  1040

seq1  AAAACTGTCCAATGACTAAAGAACACAAGTAAATTAAAATTACCATTGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTCCAATGACTAAAGAACACAAGTAAATTAAAATTACCATTGAA  1090

seq1  TTC  1101
      |||
seq2  TTC  1093


seq1: chr3_119335157_119335626
seq2: B6Ng01-255J01.g_65_534

seq1  GAATTCACAGGGTAGCTCACAGCCTGTGACTCCAGCTCCCCAGAATCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGGTAGCTCACAGCCTGTGACTCCAGCTCCCCAGAATCTGA  50

seq1  CGTGCTCTTCTGACCTTCTCATGCACTTGCCTGCATGCTGTGCACAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTCTTCTGACCTTCTCATGCACTTGCCTGCATGCTGTGCACAAGCA  100

seq1  AACACTCAGGACCCCACACACGCACATAAAGAACGTTATGACAGAGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCAGGACCCCACACACGCACATAAAGAACGTTATGACAGAGATGG  150

seq1  TTAAAATAATATATAATTATACCATTTATTCAGTGATAATATTTATTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAATATATAATTATACCATTTATTCAGTGATAATATTTATTGGT  200

seq1  TAGTTTAAAGGAATAGTATACAATATTTTCAAACACCCATTGAGCATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAAAGGAATAGTATACAATATTTTCAAACACCCATTGAGCATTTC  250

seq1  TAAACATTCTAAAAATCCCAAAATTTTATTTAATCAGCAATATCTAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTCTAAAAATCCCAAAATTTTATTTAATCAGCAATATCTAAAGA  300

seq1  CACAAAATTTTCCTTTGGTTGTTAAAAAAAGTTGCAAAAAATAATAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATTTTCCTTTGGTTGTTAAAAAAAGTTGCAAAAAATAATAAACA  350

seq1  AACAAATAAATAAATAAATATTGCATCATCTTTGTTAAACTTTTAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAATAAATAAATATTGCATCATCTTTGTTAAACTTTTAAATGT  400

seq1  ACATATAGCACAAAACTATGTATGTGAGAGAGTGTATGTGTGTGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAGCACAAAACTATGTATGTGAGAGAGTGTATGTGTGTGTGTGTG  450

seq1  TGTGTGTGTGTGTGTGTGTG  470
      |||||||||||||| |||||
seq2  TGTGTGTGTGTGTGCGTGTG  470


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