BAC Information

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BAC

Clone NameB6Ng01-256A12
Chromosome3 (Build37)
Map Location 126,057,312 - 126,168,873
singlet/doubletdoublet
Overlap geneArsj
Upstream geneNdst4, Ugt8a
Downstream geneCamk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256A12.bB6Ng01-256A12.g
ACCGA062092GA062093
length1,1231,094
definitionB6Ng01-256A12.b B6Ng01-256A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,167,747 - 126,168,873)(126,057,312 - 126,058,405)
sequence
gaattcttccaagaaaaccaaaataatacacagagagggaaatgtaggtg
agcctgaacacaacactaaaaatacgcagaaatatctttttaataaaaga
gaactcaccctagagaaaaaaatgttaatttaaaagtatgggaaaatcaa
caaagtggaaataaacacatgcatgataagaagctatagctctgaaagga
aaaatgttacaaataagattataaaggcctgcagcagttttcaaatgttt
gaacaatgttaaatcatttttattaaaatacaaggatagtatttaagtta
acaaaaactatgctagacatttatttatttatttgataaaataaaaataa
accattgaaatgagaggaaatcattaagaataaaccttctatgagttagt
aataagtttaagaccactttgaggcgatcaagcctaggagtagcttttgg
agcaggcagaatagcctgatctcactctggccacttaggcagagggagtc
actttgaaggaaggtttgggaagaaagtgacttcaaggtgtgataaacat
ttatgcagttatatctttttttttccacatagttttcagaaaaaaaaaaa
aagaaagccattctgaacatttagttggctaaagcatacacagttttttc
aggtatttgattatgtgtaatgccaatttacttcctgtagccggtagccg
tgaagacatctaatttttttccatctggtctaacctagatatagaaggaa
gtacacaaaggccatcgtatgaggttgcgtactatatcctttgatacaga
tagtcaaaagatacgtcgtcttaagttgtttatcttcattaacattcagc
caattttcatccaagggaagtttattcaaaactcttccttttctatcttt
tctctttactaattttaatataggccaatccagaatgttttcgttttcta
attatacaagttaaactggcaaatgaccttgggtacagtcattgcctaca
aaacatatgttttctgatacttttggctcagccggcccttacctaagtcc
tgctgctatgcctctccagactggtctgattccagagtagcataacatta
gctgactaacaaaacaaactaac

gaattctttttaattccatacatgcttaactgtttttcgtgttttatagt
gaaaataaaatagttttgtttcattttgaatttagttttgctgctttcat
atcactgacatgctcatatctaactgtgctgcctagttctgtgtcaactt
gacacaagctagagtccttgtgaaggagggagcctcagttaaggaaatgc
ctcccccataaggttgggctgtaggcaagcttgtgaagcatttaaattag
taactgaagtgggagggcccagtctactggaaatagggccactcctgaac
agcactgtgccactttcctgccttcaggttcctgccctgcttgaattcct
gtccagacttcgattgatgatgaacagggatatggaagcataaatcaaat
aaacatttttctccccaaattgctttggtcatggtgttttatcacagcaa
taggaaccttagctaagatagtaaaactactgcattgaacaattccaacc
aacgatttgagcagcactgtcaattaacagtcttttgatcactatctata
acaaatctgacctcagtgctgaaatatgagtccaacaatatacagttata
aaaactatagtcttgaattgaagcaaaccttttccttttcctctccctag
atacagaacactgtagtgtttagctagagtttctactccttcttccctac
cttcttaggttaatttctcctagttaggtcaaatgaccaatatgatgtat
gctaaggcagcatgtgtcatggaatgacttttgtttggtaaaggtgcctg
atccctctcggagggcttcttctctagagaaagatatattcaagagtcac
ctcctccatgtagaactcctttatactctataaaaccctgtctgaaccca
caccactgcactttcacctactccacaggccaaagacaactaagacagct
ttgctttgtgtgtggtagtatctcatttctagggcccatgcaagtatact
ttgccctaagaagtaatgaagaatcagcagctttctgtaacctatacttc
cctctggttcaccagcagctactccatagatttctgggagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126167747_126168873
seq2: B6Ng01-256A12.b_46_1168 (reverse)

seq1  GTTAATTTGTTTTGTTTATGTCAACTAATG-TATGCTAACTCTGGGAATC  49
      |||| |||||||||||   |||| |||||| |||||| ||||| ||||||
seq2  GTTAGTTTGTTTTGTT--AGTCAGCTAATGTTATGCT-ACTCT-GGAATC  46

seq1  AGACCAGTCTGGAGAAGGCATAGCAAGCAAGGACCTTAGGTAA-GGCCGG  98
      |||||||||||||| ||||||||| ||| |||| ||||||||| ||||||
seq2  AGACCAGTCTGGAG-AGGCATAGC-AGC-AGGA-CTTAGGTAAGGGCCGG  92

seq1  CTGAGCCAAAAGTATCAGAAAACATATGTTTTGTAGGCAATGACTGTA-C  147
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGAGCCAAAAGTATCAGAAAACATATGTTTTGTAGGCAATGACTGTACC  142

seq1  CAAGGTCATTTGCCAG-TTAACTTGTATAATTAGAAAACGAAAACATTCT  196
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAAGGTCATTTGCCAGTTTAACTTGTATAATTAGAAAACGAAAACATTCT  192

seq1  GGATTGGCCTATATTAAAATTAGTAAAGAGAAAAGATAGAAAAGGAAGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGCCTATATTAAAATTAGTAAAGAGAAAAGATAGAAAAGGAAGAG  242

seq1  TTTTGAATAAACTTCCCTTGGATGAAAATTGGCTGAATGTTAATGAAGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATAAACTTCCCTTGGATGAAAATTGGCTGAATGTTAATGAAGAT  292

seq1  AAACAACTTAAGACGACGTATCTTTTGACTATCTGTATCAAAGGATATAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTTAAGACGACGTATCTTTTGACTATCTGTATCAAAGGATATAG  342

seq1  TACGCAACCTCATACGATGGCCTTTGTGTACTTCCTTCTATATCTAGGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCAACCTCATACGATGGCCTTTGTGTACTTCCTTCTATATCTAGGTT  392

seq1  AGACCAGATGGAAAAAAATTAGATGTCTTCACGGCTACCGGCTACAGGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGATGGAAAAAAATTAGATGTCTTCACGGCTACCGGCTACAGGAA  442

seq1  GTAAATTGGCATTACACATAATCAAATACCTGAAAAAACTGTGTATGCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGGCATTACACATAATCAAATACCTGAAAAAACTGTGTATGCTT  492

seq1  TAGCCAACTAAATGTTCAGAATGGCTTTCTTTTTTTTTTTTTCTGAAAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAACTAAATGTTCAGAATGGCTTTCTTTTTTTTTTTTTCTGAAAAC  542

seq1  TATGTGGAAAAAAAAAGATATAACTGCATAAATGTTTATCACACCTTGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGAAAAAAAAAGATATAACTGCATAAATGTTTATCACACCTTGAA  592

seq1  GTCACTTTCTTCCCAAACCTTCCTTCAAAGTGACTCCCTCTGCCTAAGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTCTTCCCAAACCTTCCTTCAAAGTGACTCCCTCTGCCTAAGTG  642

seq1  GCCAGAGTGAGATCAGGCTATTCTGCCTGCTCCAAAAGCTACTCCTAGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGTGAGATCAGGCTATTCTGCCTGCTCCAAAAGCTACTCCTAGGC  692

seq1  TTGATCGCCTCAAAGTGGTCTTAAACTTATTACTAACTCATAGAAGGTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCGCCTCAAAGTGGTCTTAAACTTATTACTAACTCATAGAAGGTTT  742

seq1  ATTCTTAATGATTTCCTCTCATTTCAATGGTTTATTTTTATTTTATCAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAATGATTTCCTCTCATTTCAATGGTTTATTTTTATTTTATCAAA  792

seq1  TAAATAAATAAATGTCTAGCATAGTTTTTGTTAACTTAAATACTATCCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATGTCTAGCATAGTTTTTGTTAACTTAAATACTATCCTT  842

seq1  GTATTTTAATAAAAATGATTTAACATTGTTCAAACATTTGAAAACTGCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAATAAAAATGATTTAACATTGTTCAAACATTTGAAAACTGCTG  892

seq1  CAGGCCTTTATAATCTTATTTGTAACATTTTTCCTTTCAGAGCTATAGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTTTATAATCTTATTTGTAACATTTTTCCTTTCAGAGCTATAGCT  942

seq1  TCTTATCATGCATGTGTTTATTTCCACTTTGTTGATTTTCCCATACTTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCATGCATGTGTTTATTTCCACTTTGTTGATTTTCCCATACTTTT  992

seq1  AAATTAACATTTTTTTCTCTAGGGTGAGTTCTCTTTTATTAAAAAGATAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACATTTTTTTCTCTAGGGTGAGTTCTCTTTTATTAAAAAGATAT  1042

seq1  TTCTGCGTATTTTTAGTGTTGTGTTCAGGCTCACCTACATTTCCCTCTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCGTATTTTTAGTGTTGTGTTCAGGCTCACCTACATTTCCCTCTCT  1092

seq1  GTGTATTATTTTGGTTTTCTTGGAAGAATTC  1127
      |||||||||||||||||||||||||||||||
seq2  GTGTATTATTTTGGTTTTCTTGGAAGAATTC  1123


seq1: chr3_126057312_126058405
seq2: B6Ng01-256A12.g_65_1158

seq1  GAATTCTTTTTAATTCCATACATGCTTAACTGTTTTTCGTGTTTTATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAATTCCATACATGCTTAACTGTTTTTCGTGTTTTATAGT  50

seq1  GAAAATAAAATAGTTTTGTTTCATTTTGAATTTAGTTTTGCTGCTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAATAGTTTTGTTTCATTTTGAATTTAGTTTTGCTGCTTTCAT  100

seq1  ATCACTGACATGCTCATATCTAACTGTGCTGCCTAGTTCTGTGTCAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGACATGCTCATATCTAACTGTGCTGCCTAGTTCTGTGTCAACTT  150

seq1  GACACAAGCTAGAGTCCTTGTGAAGGAGGGAGCCTCAGTTAAGGAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAGCTAGAGTCCTTGTGAAGGAGGGAGCCTCAGTTAAGGAAATGC  200

seq1  CTCCCCCATAAGGTTGGGCTGTAGGCAAGCTTGTGAAGCATTTAAATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCATAAGGTTGGGCTGTAGGCAAGCTTGTGAAGCATTTAAATTAG  250

seq1  TAACTGAAGTGGGAGGGCCCAGTCTACTGGAAATAGGGCCACTCCTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAAGTGGGAGGGCCCAGTCTACTGGAAATAGGGCCACTCCTGAAC  300

seq1  AGCACTGTGCCACTTTCCTGCCTTCAGGTTCCTGCCCTGCTTGAATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTGCCACTTTCCTGCCTTCAGGTTCCTGCCCTGCTTGAATTCCT  350

seq1  GTCCAGACTTCGATTGATGATGAACAGGGATATGGAAGCATAAATCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGACTTCGATTGATGATGAACAGGGATATGGAAGCATAAATCAAAT  400

seq1  AAACATTTTTCTCCCCAAATTGCTTTGGTCATGGTGTTTTATCACAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTTCTCCCCAAATTGCTTTGGTCATGGTGTTTTATCACAGCAA  450

seq1  TAGGAACCTTAGCTAAGATAGTAAAACTACTGCATTGAACAATTCCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACCTTAGCTAAGATAGTAAAACTACTGCATTGAACAATTCCAACC  500

seq1  AACGATTTGAGCAGCACTGTCAATTAACAGTCTTTTGATCACTATCTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATTTGAGCAGCACTGTCAATTAACAGTCTTTTGATCACTATCTATA  550

seq1  ACAAATCTGACCTCAGTGCTGAAATATGAGTCCAACAATATACAGTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTGACCTCAGTGCTGAAATATGAGTCCAACAATATACAGTTATA  600

seq1  AAAACTATAGTCTTGAATTGAAGCAAACCTTTTCCTTTTCCTCTCCCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATAGTCTTGAATTGAAGCAAACCTTTTCCTTTTCCTCTCCCTAG  650

seq1  ATACAGAACACTGTAGTGTTTAGCTAGAGTTTCTACTCCTTCTTCCCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAACACTGTAGTGTTTAGCTAGAGTTTCTACTCCTTCTTCCCTAC  700

seq1  CTTCTTAGGTTAATTTCTCCTAGTTAGGTCAAATGACCAATATGATGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGGTTAATTTCTCCTAGTTAGGTCAAATGACCAATATGATGTAT  750

seq1  GCTAAGGCAGCATGTGTCATGGAATGACTTTTGTTTGGTAAAGGTGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGCAGCATGTGTCATGGAATGACTTTTGTTTGGTAAAGGTGCCTG  800

seq1  ATCCCTCTCGGAGGGCTTCTTCTCTAGAGAAAGATATATTCAAGAGTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCTCGGAGGGCTTCTTCTCTAGAGAAAGATATATTCAAGAGTCAC  850

seq1  CTCCTCCATGTAGAACTCCTTTATACTCTATAAAACCCTGTCTGAA-CCA  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCCTCCATGTAGAACTCCTTTATACTCTATAAAACCCTGTCTGAACCCA  900

seq1  CACCACTGCACTTTCACCTACTCCACAGGCCAAAGACAACTAAGACAGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGCACTTTCACCTACTCCACAGGCCAAAGACAACTAAGACAGCT  950

seq1  TTGCTTTGTGTGTGGTAGTATCTCATTTCTAGGGGCCATGCAAGTATACT  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGCTTTGTGTGTGGTAGTATCTCATTTCTAGGGCCCATGCAAGTATACT  1000

seq1  TTGCCCTAAGGAAGTAATGAAGAATCAGCAGCTTTCTGTAACCTATACTT  1049
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  TTGCCCTAA-GAAGTAATGAAGAATCAGCAGCTTTCTGTAACCTATAC-T  1048

seq1  TCCCTCTGG-TCACCAGCAGCTACTCCATAGATTTCTGGGAGAAAA  1094
      ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGGTTCACCAGCAGCTACTCCATAGATTTCTGGGAGAAAA  1094


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