BAC Information

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BAC

Clone NameB6Ng01-256A14
Chromosome3 (Build37)
Map Location 126,055,711 - 126,149,096
singlet/doubletdoublet
Overlap geneArsj
Upstream geneNdst4, Ugt8a
Downstream geneCamk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256A14.bB6Ng01-256A14.g
ACCGA062096GA062097
length1,1151,150
definitionB6Ng01-256A14.b B6Ng01-256A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,147,976 - 126,149,096)(126,055,711 - 126,056,861)
sequence
gaattccattgactgtcacattcaggtatagtgaccttataaggtgacaa
ttttaggtgaaaggagtttagagcccaagatgtaggaaggtttttcttga
tacctcacaagttgtaggaagcattaccgagataccaacttgtttgctaa
agtatcctgccacggaggaacacacttatctgtggtccctatgccgtgtt
ttcattaattaaactcctatcctttaaattttcctttaaaatcaaatgta
tatgtatatatatatatatatataatatgtatacaaatatgtatataata
ttatatattatatttacatcatttaccactctttcctctaatttatatct
tcccaaacaccctctcatatttatggtctcttcttctttaaatatatata
acatgcttaattatatatacacatatgaataaaaatgtaaatacagcctg
ttgaattttagaataagattttgcacacaacctttacaaaccattgtcac
accacactttcttctcctattttgatcctgtttattctggtcttcaaagt
gttgtttgtaatcccctgttctgcaggcacaatagactgcgccctttaaa
gtgtctccgagcccactgattcttctatatatcactaaactttctcccca
aactgtgtgcattctgctgtttccttcccctgtagggtgtaggggaatct
gcaccatgtctctctgctgcctataccttcacttttgtgcacataagtca
tttgtgtatttctcctattaaacaagtcagcagtccactccaggacacgt
tcagaaggcacatataaagttctccttttgaccccactcttgtttattgg
aatttcatggttgtttagaatttgaatgtcagttgatgccacttttcagt
cacctctcagtgcagaaggacattaatcctgaaagcattgatcccaggag
gtttcatatgatgtaatcacattgatgactgggtttgaattttatctaga
agacatatttacttttgattgagaaaatagcatgtttcccacttaatatc
agtagaaaaaattggcagtagtgaatagcagatatttttaatggagcttt
tgtgttattgcattt

gaattcaatgaattagagatctaggaacattgtgtaccaaggcaaagggc
cattctttctatgactcaccagggaggagctactctctgtaccttctctg
gttctattttctttagagaacaaggtaagcaaccatatttggctgttacc
ttggtttattacaattagacaaatattttaatgatatctgatcttccact
tttaaaaaattggccccatcccataatactgaggatggcctcaccagggt
atgattttgaatgagtcttctctggcctcaaactgcattatcaggctacc
atacactagcttttagcccttccccgactccttagatgaaaaagtaatca
tttgaattctcaggtgacccattttcaaggaattttctgaagtgagagct
atggagaaaacgggagaaatatagacatttacaggaatgctacaaaacac
tttcatgtgtattattcctacccaatccacagaaaataacagtagcagta
gatagagaccacaccctgcacacctgtaacagactaaaacattgaataca
tgtagtgtcttgatggacagtaggaaaaaaagtcaaactctgtcttaatc
ttttccttgaagtatgttaaatatttgaaggttatttttaaaagagacta
tataactcacagtgaagattatatataattctaccatgagatagttcagt
agtctttcagagacacacgctcttccagctggcttctgtttgaacatttt
ctgacatatagttggtgctgatatccaactggcttctgccctagaaattc
tgtgttcttttattaaggagatagaaaaggaatctcaaagagaaaggaga
tattattttgggcctgggactcatctctttttatgtatttgaagccacca
acactcagaaaaattaaaggacttgctctatatcatgaggagacattgca
tgggaccctaaccctaaccctgcagaacaggagttgatgggcctcctgtg
cccaggaaggtctccactctgtccagctggtgttctttcctccccatttc
ttatgatcctcttcttctgtttaacactattctcttccagtgaactcacc
tggacctagttaaaaaatattatcttcctgaattaacataattatttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126147976_126149096
seq2: B6Ng01-256A14.b_46_1160 (reverse)

seq1  AAATGCAATAACACAAAGGCT-CATTAAAAATATCCTGCCTATTCACTAC  49
      ||||||||||||||||| ||| |||||||||||| ||| |||||||||| 
seq2  AAATGCAATAACACAAAAGCTCCATTAAAAATAT-CTG-CTATTCACTA-  47

seq1  CTGCCAATTTTTTCTACTGATAATTAAGTGGGAAACATGCTA-TTTCTCA  98
      ||||||||||||||||||||| |||||||||||||||||||| |||||| 
seq2  CTGCCAATTTTTTCTACTGAT-ATTAAGTGGGAAACATGCTATTTTCTC-  95

seq1  AATCAAAAGTAAAATATGTCTTCTAGATAAAAATTCAAACCCAGTCATCA  148
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  AATCAAAAGT-AAATATGTCTTCTAGAT-AAAATTCAAACCCAGTCATCA  143

seq1  ATGTGATTACATCATATGAAACCTCCTGGGATCAATGCTTTCAGGATTAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTACATCATATGAAACCTCCTGGGATCAATGCTTTCAGGATTAA  193

seq1  TGTCCCTTCTGCACTGAGAGGTGACTGAAAAGTGGCATCAACTGACATTC  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGT-CCTTCTGCACTGAGAGGTGACTGAAAAGTGGCATCAACTGACATTC  242

seq1  AAATTCTAAACAACCATGAAATTCCAATAAACAAGAGTGGGGTCAAAAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAAACAACCATGAAATTCCAATAAACAAGAGTGGGGTCAAAAGG  292

seq1  AGAACTTTATATGTGCCTTCTGAACGTGTCCTGGAGTGGACTGCTGACTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTATATGTGCCTTCTGAACGTGTCCTGGAGTGGACTGCTGACTT  342

seq1  GTTTAATAGGAGAAATACACAAATGACTTATGTGCACAAAAGTGAAGGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAGGAGAAATACACAAATGACTTATGTGCACAAAAGTGAAGGTA  392

seq1  TAGGCAGCAGAGAGACATGGTGCAGATTCCCCTACACCCTACAGGGGAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGCAGAGAGACATGGTGCAGATTCCCCTACACCCTACAGGGGAAG  442

seq1  GAAACAGCAGAATGCACACAGTTTGGGGAGAAAGTTTAGTGATATATAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCAGAATGCACACAGTTTGGGGAGAAAGTTTAGTGATATATAGA  492

seq1  AGAATCAGTGGGCTCGGAGACACTTTAAAGGGCGCAGTCTATTGTGCCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGTGGGCTCGGAGACACTTTAAAGGGCGCAGTCTATTGTGCCTG  542

seq1  CAGAACAGGGGATTACAAACAACACTTTGAAGACCAGAATAAACAGGATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGGGGATTACAAACAACACTTTGAAGACCAGAATAAACAGGATC  592

seq1  AAAATAGGAGAAGAAAGTGTGGTGTGACAATGGTTTGTAAAGGTTGTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGAGAAGAAAGTGTGGTGTGACAATGGTTTGTAAAGGTTGTGTG  642

seq1  CAAAATCTTATTCTAAAATTCAACAGGCTGTATTTACATTTTTATTCATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCTTATTCTAAAATTCAACAGGCTGTATTTACATTTTTATTCATA  692

seq1  TGTGTATATATAATTAAGCATGTTATATATATTTAAAGAAGAAGAGACCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATATAATTAAGCATGTTATATATATTTAAAGAAGAAGAGACCA  742

seq1  TAAATATGAGAGGGTGTTTGGGAAGATATAAATTAGAGGAAAGAGTGGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGAGAGGGTGTTTGGGAAGATATAAATTAGAGGAAAGAGTGGTA  792

seq1  AATGATGTAAATATAATATATAATATTATATACATATTTGTATACATATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTAAATATAATATATAATATTATATACATATTTGTATACATATT  842

seq1  ATATATATATATATATATACATATACATTTGATTTTAAAGGAAAATTTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATACATATACATTTGATTTTAAAGGAAAATTTAA  892

seq1  AGGATAGGAGTTTAATTAATGAAAACACGGCATAGGGACCACAGATAAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGGAGTTTAATTAATGAAAACACGGCATAGGGACCACAGATAAGT  942

seq1  GTGTTCCTCCGTGGCAGGATACTTTAGCAAACAAGTTGGTATCTCGGTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTCCGTGGCAGGATACTTTAGCAAACAAGTTGGTATCTCGGTAA  992

seq1  TGCTTCCTACAACTTGTGAGGTATCAAGAAAAACCTTCCTACATCTTGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTACAACTTGTGAGGTATCAAGAAAAACCTTCCTACATCTTGGG  1042

seq1  CTCTAAACTCCTTTCACCTAAAATTGTCACCTTATAAGGTCACTATACCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACTCCTTTCACCTAAAATTGTCACCTTATAAGGTCACTATACCT  1092

seq1  GAATGTGACAGTCAATGGAATTC  1121
      |||||||||||||||||||||||
seq2  GAATGTGACAGTCAATGGAATTC  1115


seq1: chr3_126055711_126056861
seq2: B6Ng01-256A14.g_64_1213

seq1  GAATTCAATGAATTAGAGATCTAGGAACATTGTGTACCAAGGCAAAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAATTAGAGATCTAGGAACATTGTGTACCAAGGCAAAGGGC  50

seq1  CATTCTTTCTATGACTCACCAGGGAGGAGCTACTCTCTGTACCTTCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTCTATGACTCACCAGGGAGGAGCTACTCTCTGTACCTTCTCTG  100

seq1  GTTCTATTTTCTTTAGAGAACAAGGTAAGCAACCATATTTGGCTGTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTTTCTTTAGAGAACAAGGTAAGCAACCATATTTGGCTGTTACC  150

seq1  TTGGTTTATTACAATTAGACAAATATTTTAATGATATCTGATCTTCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTATTACAATTAGACAAATATTTTAATGATATCTGATCTTCCACT  200

seq1  TTTAAAAAATTGGCCCCATCCCATAATACTGAGGATGGCCTCACCAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATTGGCCCCATCCCATAATACTGAGGATGGCCTCACCAGGGT  250

seq1  ATGATTTTGAATGAGTCTTCTCTGGCCTCAAACTGCATTATCAGGCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTGAATGAGTCTTCTCTGGCCTCAAACTGCATTATCAGGCTACC  300

seq1  ATACACTAGCTTTTAGCCCTTCCCCGACTCCTTAGATGAAAAAGTAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTAGCTTTTAGCCCTTCCCCGACTCCTTAGATGAAAAAGTAATCA  350

seq1  TTTGAATTCTCAGGTGACCCATTTTCAAGGAATTTTCTGAAGTGAGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTCTCAGGTGACCCATTTTCAAGGAATTTTCTGAAGTGAGAGCT  400

seq1  ATGGAGAAAACGGGAGAAATATAGACATTTACAGGAATGCTACAAAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAACGGGAGAAATATAGACATTTACAGGAATGCTACAAAACAC  450

seq1  TTTCATGTGTATTATTCCTACCCAATCCACAGAAAATAACAGTAGCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTGTATTATTCCTACCCAATCCACAGAAAATAACAGTAGCAGTA  500

seq1  GATAGAGACCACACCCTGCACACCTGTAACAGACTAAAACATTGAATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGACCACACCCTGCACACCTGTAACAGACTAAAACATTGAATACA  550

seq1  TGTAGTGTCTTGATGGACAGTAGGAAAAAAAGTCAAACTCTGTCTTAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTCTTGATGGACAGTAGGAAAAAAAGTCAAACTCTGTCTTAATC  600

seq1  TTTTCCTTGAAGTATGTTAAATATTTGAAGGTTATTTTTAAAAGAGACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGAAGTATGTTAAATATTTGAAGGTTATTTTTAAAAGAGACTA  650

seq1  TATAACTCACAGTGAAGATTATATATAATTCTACCATGAGATAGTTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTCACAGTGAAGATTATATATAATTCTACCATGAGATAGTTCAGT  700

seq1  AGTCTTTCAGAGACACACGCTCTTCCAGCTGGCTTCTGTTTGAACATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCAGAGACACACGCTCTTCCAGCTGGCTTCTGTTTGAACATTTT  750

seq1  CTGACATATAGTTGGTGCTGATATCCAACTGGCTTCTGCCCTAGAAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATATAGTTGGTGCTGATATCCAACTGGCTTCTGCCCTAGAAATTC  800

seq1  TGTGTTCTTTTATTAAGGAGATAGAAAAGGAATCTCAAAGAGAAAGGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTTTATTAAGGAGATAGAAAAGGAATCTCAAAGAGAAAGGAGA  850

seq1  TATTATTTTGGGCCTGGGACTCATCTCTTTTTATGTATTTGAAGCCACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTGGGCCTGGGACTCATCTCTTTTTATGTATTTGAAGCCACCA  900

seq1  ACACTCAGAAAAATTAAGGGACTTGCTCTATATCATGAGGAGACATTGCA  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACACTCAGAAAAATTAAAGGACTTGCTCTATATCATGAGGAGACATTGCA  950

seq1  TGGGACCCTAACCCTAACCCTGCAGAACAGGAGTTGATGGCCTCCCTGTG  1000
      |||||||||||||||||||||||||||||||||||||||| |  ||||||
seq2  TGGGACCCTAACCCTAACCCTGCAGAACAGGAGTTGATGGGCCTCCTGTG  1000

seq1  CCCAGGAAGGGTCTCCACTCTGTCCAGCTGGTGTTCTTTCCTCCCCATTT  1050
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAA-GGTCTCCACTCTGTCCAGCTGGTGTTCTTTCCTCCCCATTT  1049

seq1  CTTATGATCCTC-TCTTCTGTTTAACACTA-TCTCTCCCAGTG-ACTCAA  1097
      |||||||||||| ||||||||||||||||| ||||| |||||| ||||| 
seq2  CTTATGATCCTCTTCTTCTGTTTAACACTATTCTCTTCCAGTGAACTCAC  1099

seq1  CCTGACTAATTTAAAAAAAATATTTATCTTCTGGAATTAACATAAATATT  1147
      |  |||  | |||||||| |   ||||||||  |||||||||||| ||||
seq2  CTGGACCTAGTTAAAAAATA---TTATCTTCCTGAATTAACATAATTATT  1146

seq1  TAAA  1151
      ||||
seq2  TAAA  1150


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