BAC Information

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BAC

Clone NameB6Ng01-256D09
Chromosome3 (Build37)
Map Location 99,387,158 - 99,388,246
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15, M6pr-ps
Downstream geneSpag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256D09.bB6Ng01-256D09.g
ACCGA062230GA062231
length1,1871,117
definitionB6Ng01-256D09.b B6Ng01-256D09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcctt
tatccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaatgctccttccaattccgttgaagaattgagttgggatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccaagatattttatattat
ttgtgactattgagaaggggtgtgttccctaatttctttctcagcctgtt
tattctttgtatagagaaagggccatttgacttgtttgagtttattttat
atccagctacttcacgaaagctggtttatcagtttaggagttcttctggt
aggacttttagggctccacttaattatacctattcgtcatctgccaaaag
ctgaatatttttgaacttccctcctttttccaaatat
gaattctctgcttcattgcatgtttagtaattttgcttaattgaatgcca
gatgttgtgaacttgaacatggtgaatactagatttttattcgtaaaaca
tataaagtaatagctgtgtcttgtggcacaggcaagttgactggtacctt
caaatgtgtttcagaccttttagaaaggaaaaaatggttttttgcctgat
aaaaattatatcttgttactgagaggaataagaaggaagtgattttcttg
acacttctgtaaattaagacatgtctcatttgggctggtggagatagtta
ctgttgctgggggttataggcactagtagtaatctcttatctggttaagg
gttttattgttcttgggcagtttacacagacacagatacaagcacacaca
cacacagatgtagacatagacacagacacacacacacacacacacacaca
cacacacacacacacacacacacacacacagacccttgaatccccaacag
gaatcctttcagctccttcacactctttctctacacagctcacttccctc
aaatgctttgccctggaaaccccatgtctttgttggacctgacagttcag
atctgctttctctgtttagctctgatgtgctaatgaagagctgggccatg
atggtggggcaagagatggtcctaacctacttcatccattttctgtctct
caaagcactgattgcctgatgctgaaggcttccaaagacagttttccata
tatttgtgtttagggtttctttacaaagaaaaataaaaataatccatgtt
gatcagtatttttgcagataaagaattgagccaaagctgttagtaagatc
taaatttcaaaattttcaagtgttcccagatcatccataagttaatgaaa
ttttcaataaaaacttcataaaaaacaacttataagacttagaaatttct
gctttctagatacaaataggaaaacttaggatggaggaatattccctttt
cccttacctatccaggcttttgtcttccaaccagttaattccctaatcgc
cccatgaacattattgtgtactgtctgtgtatgtaatgtgtgtgcaatgc
catggtatgtggtgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99387158_99388246
seq2: B6Ng01-256D09.g_65_1181 (reverse)

seq1  GCACA-CACATA-CAT-GCA-TGCACACACA-TACATACACAGACAG-AC  44
      ||||| |||||| ||| ||| |||||||||| ||||||||||||||| ||
seq2  GCACACCACATACCATGGCATTGCACACACATTACATACACAGACAGTAC  50

seq1  ACAAT-ATG-TCATGGGGCGAT--AGGAAT--AATGTGTGG-AGAC-AAA  86
      ||||| ||| ||||||||||||   |||||  | ||  ||| |||| |||
seq2  ACAATAATGTTCATGGGGCGATTAGGGAATTAACTGGTTGGAAGACAAAA  100

seq1  GCCT-GATAGTTA--GGAAA--GGGATATTC--TCAT-CTAAGTTTT-CT  127
      |||| ||||| ||  |||||  || ||||||   ||| ||||||||| ||
seq2  GCCTGGATAGGTAAGGGAAAAGGGAATATTCCTCCATCCTAAGTTTTCCT  150

seq1  ATTTGTATCTTAGAAGCAG-AATTTCT-AGTCTTATAAGTTG--TTTTAT  173
      ||||||||||   |||||| ||||||| ||||||||||||||  ||||||
seq2  ATTTGTATCTAGAAAGCAGAAATTTCTAAGTCTTATAAGTTGTTTTTTAT  200

seq1  GAAGTTTTTATTG-AAATTTCATTAACTTATGGATTGATCTGGGAACACT  222
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  GAAGTTTTTATTGAAAATTTCATTAACTTATGGA-TGATCTGGGAACACT  249

seq1  TG-AAATTTTGAAATTTAGATCTTACTAACAGCTTTGGCTCAATTCTTTA  271
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTTTGAAATTTAGATCTTACTAACAGCTTTGGCTCAATTCTTTA  299

seq1  TCTGCAAAAATACTGATCAACATGGATTATTTTTATTTTTCTTTGTAAAG  321
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAAAATACTGATCAACATGGATTATTTTTATTTTTCTTTGTAAAG  349

seq1  AAACCCTAAACACAAATATATGGAAAACTGTCTTTGGAAGCCTTCAGCAT  371
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTAAACACAAATATATGGAAAACTGTCTTTGGAAGCCTTCAGCAT  399

seq1  CAGGCAATCAGTGCTTTGAGAGACAGAAAATGGATGAAGTAGGTTAGGAC  421
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATCAGTGCTTTGAGAGACAGAAAATGGATGAAGTAGGTTAGGAC  449

seq1  CATCTCTTGCCCCACCATCATGGCCCAGCTCTTCATTAGCACATCAGAGC  471
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTGCCCCACCATCATGGCCCAGCTCTTCATTAGCACATCAGAGC  499

seq1  TAAACAGAGAAAGCAGATCTGAACTGTCAGGTCCAACAAAGACATGGGGT  521
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAGAAAGCAGATCTGAACTGTCAGGTCCAACAAAGACATGGGGT  549

seq1  TTCCAGGGCAAAGCATTTGAGGGAAGTGAGCTGTGTAGAGAAAGAGTGTG  571
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGCAAAGCATTTGAGGGAAGTGAGCTGTGTAGAGAAAGAGTGTG  599

seq1  AAGGAGCTGAAAGGATTCCTGTTGGGGATTCAAGGGTCTGTGTGTGTGTG  621
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTGAAAGGATTCCTGTTGGGGATTCAAGGGTCTGTGTGTGTGTG  649

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTC  671
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTC  699

seq1  TATGTCTACATCTGTGTGTGTGTGTGCTTGTATCTGTGTCTGTGTAAACT  721
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTACATCTGTGTGTGTGTGTGCTTGTATCTGTGTCTGTGTAAACT  749

seq1  GCCCAAGAACAATAAAACCCTTAACCAGATAAGAGATTACTACTAGTGCC  771
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGAACAATAAAACCCTTAACCAGATAAGAGATTACTACTAGTGCC  799

seq1  TATAACCCCCAGCAACAGTAACTATCTCCACCAGCCCAAATGAGACATGT  821
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCCCCAGCAACAGTAACTATCTCCACCAGCCCAAATGAGACATGT  849

seq1  CTTAATTTACAGAAGTGTCAAGAAAATCACTTCCTTCTTATTCCTCTCAG  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTACAGAAGTGTCAAGAAAATCACTTCCTTCTTATTCCTCTCAG  899

seq1  TAACAAGATATAATTTTTATCAGGCAAAAAACCATTTTTTCCTTTCTAAA  921
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGATATAATTTTTATCAGGCAAAAAACCATTTTTTCCTTTCTAAA  949

seq1  AGGTCTGAAACACATTTGAAGGTACCAGTCAACTTGCCTGTGCCACAAGA  971
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGAAACACATTTGAAGGTACCAGTCAACTTGCCTGTGCCACAAGA  999

seq1  CACAGCTATTACTTTATATGTTTTACGAATAAAAATCTAGTATTCACCAT  1021
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTATTACTTTATATGTTTTACGAATAAAAATCTAGTATTCACCAT  1049

seq1  GTTCAAGTTCACAACATCTGGCATTCAATTAAGCAAAATTACTAAACATG  1071
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGTTCACAACATCTGGCATTCAATTAAGCAAAATTACTAAACATG  1099

seq1  CAATGAAGCAGAGAATTC  1089
      ||||||||||||||||||
seq2  CAATGAAGCAGAGAATTC  1117