BAC Information

Click to search

BAC

Clone NameB6Ng01-256D14
Chromosome3 (Build37)
Map Location 126,037,773 - 126,038,943
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst4, Ugt8a
Downstream geneArsj, Camk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256D14.bB6Ng01-256D14.g
ACCGA062240GA062241
length7591,179
definitionB6Ng01-256D14.b B6Ng01-256D14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaagtttatttcttgaactagccctgagatttctagctcttatc
tagtaaactgcaatgcctaatttctttcaccatcaacactggaggcattt
catctgaatgagtagcattcttacaaatttgcaagcctagggtcagttca
atgactgcctaggatattgggacatctgtggagggcaggaagcaatgttc
agtctaactagctatttgtcatatcatttcttggggacaactatagtaaa
acaatactgaaggaaagcatgcagaacccttcaccaactattgcaaggac
aaatctggaacatatccatttatgggatgccagagactctccaggagaac
agtttccatgaaactgtgcctcaagactgagggcaagcttttggacttgt
tattcaggctccactggagtggtgtggcagaggaccagcagtcataagta
atctggaccccacgatctctcaaacactgaaccaccaaacaggcagcata
caccagctgatatgaccccccaacacaacacacatacagtagaggatgcc
aggtctgtgttcatttagagatgattcacctaaccctcaagagcctggag
gccccatggaggttagacatcaggtgttatgggaggtgggagcatccatg
tggagatagaggtggtagggaggaggtgtcggatgtggaaaaatttggaa
gggtggatggggtgagtcaggaatacaactgagggaaagatataaatatg
atttaagcg

gaattctttgatgagccatagagtccaaataaaataaattagaagcacca
cagtattgcttgtctctccaagacatacactgactatctaattattctgt
cttttgtttaccagatttgtatctgatagtttcctttgtccaccattaaa
ttctgggatcttcctctcaacttattcttagaattcacaaaaggaaaaaa
tatctgagagtgtgtcagaatttagaacatattgttttgttaagaaaacg
acaatgtagatattagatatacattatttaatagacatcatcctggtatg
ttttacatatgaaaagaacactagtataggtaaataaatctgggaaatag
gagtttgtcctgggaaaatgtcgttttcaatgagcaatttcaaatctggg
tacatttttttttctagtttcctgtctgtctggccctcctgaatcagtga
ggcgaatgtatcctgattcatttcctgctgtttaaaaactctttcctggc
ataaagctctcacaggctgccctcccgggggtagtgagtattctctgcct
tctctggacctattccagaaccaactgtgctcagcctagccctttaattc
ttcaccaacgataacttgagtccatctcctttataccttatatgaaaatc
tagtcagatgtaacataatgtctggttttttagctttaaaggtaaaattt
taaactatttcattgacttgcaggaaaatcgcacttgatgacattgagta
aaggtttctggcaatgtgtgagcattatggaaacgttaggttcagcatca
tgaataaatctgcagtcctactgttgcgggaaatattaaaattgatatgg
ttaagttcctgatcttgcaccagctactctctgccccagcagaggtcttg
ccgcctctggctccagcagcaagtgatagaggtcttctcagctcaggttc
acttttctctggggctgctagttccttctcaagccagaatcccccccctc
ccgtgtggacggcggtcccatattccagtaaaccctcaattagagtgttc
tcaaattcggtttcagaactcccaaataacctttgggcgggattatgcat
gcaggccaaagcaaagaaccgctcctcatgcgttcagcaagccacatgtc
cagcaagccagattagaaaacaaacactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126037773_126038943
seq2: B6Ng01-256D14.g_63_1241 (reverse)

seq1  GAGT-TTTG-TTTCTA--CTGGGTTGCTGGGCATTGTGGC-TGCTGACCG  45
      |||| |||| ||||||  |||| ||||||| || |||||| |||||| ||
seq2  GAGTGTTTGTTTTCTAATCTGGCTTGCTGGACA-TGTGGCTTGCTGAACG  49

seq1  CATGGGGGAGCGG-TCTTTGCTTTGGGCTGGCATGGCAATAACCCG-CCA  93
      ||| | ||||||| |||||||||||| || |||| |||  | |||| |||
seq2  CAT-GAGGAGCGGTTCTTTGCTTTGGCCT-GCAT-GCATAATCCCGCCCA  96

seq1  AGGGTTATTTGGGAGTTCTG-AACCGAA-TTGAGAACACTCTAATGGAGG  141
      | |||||||||||||||||| ||||||| |||||||||||||||| ||||
seq2  AAGGTTATTTGGGAGTTCTGAAACCGAATTTGAGAACACTCTAATTGAGG  146

seq1  G-TTACTGGAATATGGGACCGCCGTCCACACGGGA--GGGGGGATTCTGG  188
      | |||||||||||||||||||||||||||||||||  |||||||||||||
seq2  GTTTACTGGAATATGGGACCGCCGTCCACACGGGAGGGGGGGGATTCTGG  196

seq1  CTTGAGAAGGAACTAGCAGCCCCAGAGAAAAGTGAACCTGAGCTGAGAAG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAGGAACTAGCAGCCCCAGAGAAAAGTGAACCTGAGCTGAGAAG  246

seq1  ACCTCTATCACTTGCTGCTGGAGCCAGAGGCGGCAAGACCTCTGCTGGGG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTATCACTTGCTGCTGGAGCCAGAGGCGGCAAGACCTCTGCTGGGG  296

seq1  CAGAGAGTAGCTGGTGCAAGATCAGGAACTTAACCATATCAATTTTAATA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTAGCTGGTGCAAGATCAGGAACTTAACCATATCAATTTTAATA  346

seq1  TTTCCCGCAACAGTAGGACTGCAGATTTATTCATGATGCTGAACCTAACG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCGCAACAGTAGGACTGCAGATTTATTCATGATGCTGAACCTAACG  396

seq1  TTTCCATAATGCTCACACATTGCCAGAAACCTTTACTCAATGTCATCAAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAATGCTCACACATTGCCAGAAACCTTTACTCAATGTCATCAAG  446

seq1  TGCGATTTTCCTGCAAGTCAATGAAATAGTTTAAAATTTTACCTTTAAAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATTTTCCTGCAAGTCAATGAAATAGTTTAAAATTTTACCTTTAAAG  496

seq1  CTAAAAAACCAGACATTATGTTACATCTGACTAGATTTTCATATAAGGTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAACCAGACATTATGTTACATCTGACTAGATTTTCATATAAGGTA  546

seq1  TAAAGGAGATGGACTCAAGTTATCGTTGGTGAAGAATTAAAGGGCTAGGC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAGATGGACTCAAGTTATCGTTGGTGAAGAATTAAAGGGCTAGGC  596

seq1  TGAGCACAGTTGGTTCTGGAATAGGTCCAGAGAAGGCAGAGAATACTCAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGTTGGTTCTGGAATAGGTCCAGAGAAGGCAGAGAATACTCAC  646

seq1  TACCCCCGGGAGGGCAGCCTGTGAGAGCTTTATGCCAGGAAAGAGTTTTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCGGGAGGGCAGCCTGTGAGAGCTTTATGCCAGGAAAGAGTTTTT  696

seq1  AAACAGCAGGAAATGAATCAGGATACATTCGCCTCACTGATTCAGGAGGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAGGAAATGAATCAGGATACATTCGCCTCACTGATTCAGGAGGG  746

seq1  CCAGACAGACAGGAAACTAGAAAAAAAAATGTACCCAGATTTGAAATTGC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGACAGGAAACTAGAAAAAAAAATGTACCCAGATTTGAAATTGC  796

seq1  TCATTGAAAACGACATTTTCCCAGGACAAACTCCTATTTCCCAGATTTAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAAAACGACATTTTCCCAGGACAAACTCCTATTTCCCAGATTTAT  846

seq1  TTACCTATACTAGTGTTCTTTTCATATGTAAAACATACCAGGATGATGTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATACTAGTGTTCTTTTCATATGTAAAACATACCAGGATGATGTC  896

seq1  TATTAAATAATGTATATCTAATATCTACATTGTCGTTTTCTTAACAAAAC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATAATGTATATCTAATATCTACATTGTCGTTTTCTTAACAAAAC  946

seq1  AATATGTTCTAAATTCTGACACACTCTCAGATATTTTTTCCTTTTGTGAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTCTAAATTCTGACACACTCTCAGATATTTTTTCCTTTTGTGAA  996

seq1  TTCTAAGAATAAGTTGAGAGGAAGATCCCAGAATTTAATGGTGGACAAAG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGAATAAGTTGAGAGGAAGATCCCAGAATTTAATGGTGGACAAAG  1046

seq1  GAAACTATCAGATACAAATCTGGTAAACAAAAGACAGAATAATTAGATAG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATCAGATACAAATCTGGTAAACAAAAGACAGAATAATTAGATAG  1096

seq1  TCAGTGTATGTCTTGGAGAGACAAGCAATACTGTGGTGCTTCTAATTTAT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTATGTCTTGGAGAGACAAGCAATACTGTGGTGCTTCTAATTTAT  1146

seq1  TTTATTTGGACTCTATGGCTCATCAAAGAATTC  1171
      |||||||||||||||||||||||||||||||||
seq2  TTTATTTGGACTCTATGGCTCATCAAAGAATTC  1179


| Home | SequenceCutter | Blast | Download |