BAC Information

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BAC

Clone NameB6Ng01-256H16
Chromosome3 (Build37)
Map Location 85,067,784 - 85,268,286
singlet/doubletdoublet
Overlap genenone
Upstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
Downstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256H16.bB6Ng01-256H16.g
ACCGA062429GA062430
length1,0201,118
definitionB6Ng01-256H16.b B6Ng01-256H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,267,254 - 85,268,286)(85,067,784 - 85,068,893)
sequence
gaattcagagtgctcttgggtacagcaacagcaaacctcttcctccatcc
ttcccaggtgctttgcaattctttcttgtgtctttactactattgctgtg
tgcatgcatgtttatgtgtgtgagtgtaggtgcctatacacacagtacat
gtgtggaggtcagaggacaacctccactctccatcttcactttctgcctt
gtctaaggttttcttattgtttgccagagtagctgcctgtgagcctctgg
gattctcctgtctctattgcctatctttgcagaggaactctgggattaca
gatgtgtactgatgtgttaaactttatgtgggttctggggagtcaaactc
cagaccctacacttgcagggcagttgttttaaatattgagccattttctc
agccctgctattatttttttcatacggggtcttatattgtagccaaggtt
agtctagagctcattatatatggaatccaagttaatctcaaactcagtcc
tcttgcctcattctcccaagcacactggaattacaggtgtgagtcactac
tcctgtcttgcattcattcttactacccagtttctgactgctcaggatag
agttttggcaaaatgatactcattcttccagtcagtggttatccagagac
atagtattggctgagctgtcaggaaggaaatagaaatgattttcccttag
gtatagcagggtggccccactggagcctggagagatgtatgttctgtcat
tttggaagtaccttagggggcaaaagcaagtggattctggcccaggtatt
ataccatccctgtggagttgcccagagactcagcctggggacaccatcac
aggaggagactggggacaaaatgtaaaattaacaagctacctagagggcc
atgtggtagttcaaatgagaatgcctccaaaggtttacgtatttgagggc
ttgatttgagttggtggagtggttggagattagagtggcctgatgagatg
tgtgtccctagagtgggcat
gaattccaaagagagaaggcataaaaaccaatgggaatctaaaccagagg
gaatagggaagaaaggaggctggaagctttcggaacaccaacctaccaaa
ccctcatcaaggaagtccagtctgatgtactgtggagtttcagaatcgga
ggacagaaggaggacagaaggaggacagaaggaggacagaaggaggacag
aagactccaagtgtcgaaagagaagaagcagtaaggccctggaaggaaag
agaatccataataacagcgtgcaggagggttgcctttgaaagtccccaga
agagaacatttgaaaactagaatgttctatcgaaccaaacaacaagcgtt
gaaaggtaagcatatgggagggtcagaccccaatggttaagaaagagtct
tatgtgtggtttccttctcaagaagctcagtgcacagagtccagaaaaac
aaatgaaaactcccaggaaaggaaagcctttttaatataagatgggatta
agctcacccaggaaattcctggatgccggttgtcagctagcagagatgtg
tttgaattaaagcagactatcagcagattacaagaggattactttttaag
aggactggactccgttcctagaaataagtggacatgaataaaagttctgg
agataaagaaaaaaaaaatctatcaacaaggggggagaagaagcaatcag
aaactccaggtaaaacagaaagttctacaactaagtcctaatccaaatag
taactaaaatgaagccttacacagagcacccacatgagtgtgaggaaggc
tgtgcttgacgctaaggacagtttgctgtgagtggcacgcaggtcgtgac
attggaactgggaagcagccatgggaatcattggtcctatcgctactttg
ctgtgtaatcaacaatatttacatagctgtgatgggagtaagcagtgtgc
tctggctttcagtttttagaatgtgccctataacaaagtccggggaaatt
ttacttggtggtcacaggagtaggtaaggcttggaggaaagaagagaaga
gaaacacagacacccacactctccgtctgcaggaaattagtcagaggtat
tcattgacctgttgatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_85267254_85268286
seq2: B6Ng01-256H16.b_47_1066 (reverse)

seq1  ATGCCCACTTCTAGGGACACACATCCTCCAACAAGGCCAACCTCCTAATC  50
      |||||||| ||||||||||||||| |||  |  ||||||  || ||||||
seq2  ATGCCCAC-TCTAGGGACACACAT-CTC--ATCAGGCCA--CT-CTAATC  43

seq1  CTTCCCAAACAACTCCACCAACTTCAAATCAAGCCCTCAAATACGTAAAC  100
        |||  ||| ||||||||||| |||||||||||||||||||||||||||
seq2  --TCC--AACCACTCCACCAAC-TCAAATCAAGCCCTCAAATACGTAAAC  88

seq1  CTTTGGAGGCATTCTCATTTGAACTACCACATGGCCCTCTAGGGTAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTTGGAGGCATTCTCATTTGAACTACCACATGGCCCTCTA-GGTAGCTT  137

seq1  GTTAATTTTACATTTTGTCCCCAGTCTCCTCCTGTGATGGTGTCCCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTTACATTTTGTCCCCAGTCTCCTCCTGTGATGGTGTCCCCAGG  187

seq1  CTGAGTCTCTGGGCAACTCCACAGGGATGGTATAATACCTGGGCCAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCTCTGGGCAACTCCACAGGGATGGTATAATACCTGGGCCAGAAT  237

seq1  CCACTTGCTTTTGCCCCCTAAGGTACTTCCAAAATGACAGAACATACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGCTTTTGCCCCCTAAGGTACTTCCAAAATGACAGAACATACATC  287

seq1  TCTCCAGGCTCCAGTGGGGCCACCCTGCTATACCTAAGGGAAAATCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGCTCCAGTGGGGCCACCCTGCTATACCTAAGGGAAAATCATTT  337

seq1  CTATTTCCTTCCTGACAGCTCAGCCAATACTATGTCTCTGGATAACCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCCTTCCTGACAGCTCAGCCAATACTATGTCTCTGGATAACCACT  387

seq1  GACTGGAAGAATGAGTATCATTTTGCCAAAACTCTATCCTGAGCAGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAGAATGAGTATCATTTTGCCAAAACTCTATCCTGAGCAGTCAG  437

seq1  AAACTGGGTAGTAAGAATGAATGCAAGACAGGAGTAGTGACTCACACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGTAGTAAGAATGAATGCAAGACAGGAGTAGTGACTCACACCTG  487

seq1  TAATTCCAGTGTGCTTGGGAGAATGAGGCAAGAGGACTGAGTTTGAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCAGTGTGCTTGGGAGAATGAGGCAAGAGGACTGAGTTTGAGATT  537

seq1  AACTTGGATTCCATATATAATGAGCTCTAGACTAACCTTGGCTACAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGATTCCATATATAATGAGCTCTAGACTAACCTTGGCTACAATAT  587

seq1  AAGACCCCGTATGAAAAAAATAATAGCAGGGCTGAGAAAATGGCTCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCCGTATGAAAAAAATAATAGCAGGGCTGAGAAAATGGCTCAATA  637

seq1  TTTAAAACAACTGCCCTGCAAGTGTAGGGTCTGGAGTTTGACTCCCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACAACTGCCCTGCAAGTGTAGGGTCTGGAGTTTGACTCCCCAGA  687

seq1  ACCCACATAAAGTTTAACACATCAGTACACATCTGTAATCCCAGAGTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATAAAGTTTAACACATCAGTACACATCTGTAATCCCAGAGTTCC  737

seq1  TCTGCAAAGATAGGCAATAGAGACAGGAGAATCCCAGAGGCTCACAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAAGATAGGCAATAGAGACAGGAGAATCCCAGAGGCTCACAGGCA  787

seq1  GCTACTCTGGCAAACAATAAGAAAACCTTAGACAAGGCAGAAAGTGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCTGGCAAACAATAAGAAAACCTTAGACAAGGCAGAAAGTGAAGA  837

seq1  TGGAGAGTGGAGGTTGTCCTCTGACCTCCACACATGTACTGTGTGTATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTGGAGGTTGTCCTCTGACCTCCACACATGTACTGTGTGTATAG  887

seq1  GCACCTACACTCACACACATAAACATGCATGCACACAGCAATAGTAGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTACACTCACACACATAAACATGCATGCACACAGCAATAGTAGTAA  937

seq1  AGACACAAGAAAGAATTGCAAAGCACCTGGGAAGGATGGAGGAAGAGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAGAAAGAATTGCAAAGCACCTGGGAAGGATGGAGGAAGAGGTT  987

seq1  TGCTGTTGCTGTACCCAAGAGCACTCTGAATTC  1033
      |||||||||||||||||||||||||||||||||
seq2  TGCTGTTGCTGTACCCAAGAGCACTCTGAATTC  1020

seq1: chr3_85067784_85068893
seq2: B6Ng01-256H16.g_64_1181

seq1  GAATTCCAAAGAGAGAAGGCATAAAAACCAATGGGAATCTAAACCAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGAGAGAAGGCATAAAAACCAATGGGAATCTAAACCAGAGG  50

seq1  GAATAGGGAAGAAAGGAGGCTGGAAGCTTTCGGAACACCAACCTACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGGAAGAAAGGAGGCTGGAAGCTTTCGGAACACCAACCTACCAAA  100

seq1  CCCTCATCAAGGAAGTCCAGTCTGATGTACTGTGGAGTTTCAGAATCGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCAAGGAAGTCCAGTCTGATGTACTGTGGAGTTTCAGAATCGGA  150

seq1  GGACAGAAGGAGGACAGAAGGAGGACAGAAGGAGGACAGAAGGAGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAGGAGGACAGAAGGAGGACAGAAGGAGGACAGAAGGAGGACAG  200

seq1  AAGACTCCAAGTGTCGAAAGAGAAGAAGCAGTAAGGCCCTGGAAGGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCAAGTGTCGAAAGAGAAGAAGCAGTAAGGCCCTGGAAGGAAAG  250

seq1  AGAATCCATAATAACAGCGTGCAGGAGGGTTGCCTTTGAAAGTCCCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCATAATAACAGCGTGCAGGAGGGTTGCCTTTGAAAGTCCCCAGA  300

seq1  AGAGAACATTTGAAAACTAGAATGTTCTATCGAACCAAACAACAAGCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACATTTGAAAACTAGAATGTTCTATCGAACCAAACAACAAGCGTT  350

seq1  GAAAGGTAAGCATATGGGAGGGTCAGACCCCAATGGTTAAGAAAGAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTAAGCATATGGGAGGGTCAGACCCCAATGGTTAAGAAAGAGTCT  400

seq1  TATGTGTGGTTTCCTTCTCAAGAAGCTCAGTGCACAGAGTCCAGAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGGTTTCCTTCTCAAGAAGCTCAGTGCACAGAGTCCAGAAAAAC  450

seq1  AAATGAAAACTCCCAGGAAAGGAAAGCCTTTTTAATATAAGATGGGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAACTCCCAGGAAAGGAAAGCCTTTTTAATATAAGATGGGATTA  500

seq1  AGCTCACCCAGGAAATTCCTGGATGCCGGTTGTCAGCTAGCAGAGATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCCAGGAAATTCCTGGATGCCGGTTGTCAGCTAGCAGAGATGTG  550

seq1  TTTGAATTAAAGCAGACTATCAGCAGATTACAAGAGGATTACTTTTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTAAAGCAGACTATCAGCAGATTACAAGAGGATTACTTTTTAAG  600

seq1  AGGACTGGACTCCGTTCCTAGAAATAAGTGGACATGAATAAAAGTTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGACTCCGTTCCTAGAAATAAGTGGACATGAATAAAAGTTCTGG  650

seq1  AGATAAAGAAAAAAAAAATCTATCAACAAGGGGGGAGAAGAAGCAATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGAAAAAAAAAATCTATCAACAAGGGGGGAGAAGAAGCAATCAG  700

seq1  AAACTCCAGGTAAAACAGAAAGTTCTACAACTAAGTCCTAATCCAAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAGGTAAAACAGAAAGTTCTACAACTAAGTCCTAATCCAAATAG  750

seq1  TAACTAAAATGAAGCCTTACACAGAGCACCCACATGAGTGTGAGGAAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAAATGAAGCCTTACACAGAGCACCCACATGAGTGTGAGGAAGGC  800

seq1  TGTGCTTGACGCTAAGGACAGTTTGCTGTGAGTGGCACGCAGGTCGTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGACGCTAAGGACAGTTTGCTGTGAGTGGCACGCAGGTCGTGAC  850

seq1  ATTGGAACTGGGAAGCAGCCAT-GGAATCA-TGGTCCTATCGCTAC-TTG  897
      |||||||||||||||||||||| ||||||| ||||||||||||||| |||
seq2  ATTGGAACTGGGAAGCAGCCATGGGAATCATTGGTCCTATCGCTACTTTG  900

seq1  CTGTGTAATCAACAATATTTACATAGCTGTGAT-GGAGTAAGCAGTGTGC  946
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGTGTAATCAACAATATTTACATAGCTGTGATGGGAGTAAGCAGTGTGC  950

seq1  TCTGGCTTTCAGTTTTTAGAATGTG-CCTATAAACAAAG-CCGGGGAAAT  994
      ||||||||||||||||||||||||| ||||| ||||||| ||||||||||
seq2  TCTGGCTTTCAGTTTTTAGAATGTGCCCTAT-AACAAAGTCCGGGGAAAT  999

seq1  TTTACT--GTGGTCACA-GAGTAGGTAGGGCTTGGAGGGAAAGAAGAGAA  1041
      ||||||  ||||||||| ||||||||| |||||||| |||||||||||||
seq2  TTTACTTGGTGGTCACAGGAGTAGGTAAGGCTTGGA-GGAAAGAAGAGAA  1048

seq1  GAGGAAACACAGACA-CCACACTCT-CGTCTTGCAGGAAAATAAGTCAGA  1089
      || |||||||||||| ||||||||| |||| |||||| |||| |||||||
seq2  GA-GAAACACAGACACCCACACTCTCCGTC-TGCAGG-AAATTAGTCAGA  1095

seq1  GGTA-TCATTGA-CTGTTGATGG  1110
      |||| ||||||| ||||||||||
seq2  GGTATTCATTGACCTGTTGATGG  1118