BAC Information

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BAC

Clone NameB6Ng01-256L10
Chromosome3 (Build37)
Map Location 139,421,111 - 139,598,377
singlet/doubletdoublet
Overlap genenone
Upstream geneTspan5, LOC620771, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
Downstream geneLOC229883, LOC621343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256L10.bB6Ng01-256L10.g
ACCGA062602GA062603
length1,1281,001
definitionB6Ng01-256L10.b B6Ng01-256L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,597,279 - 139,598,377)(139,421,111 - 139,422,111)
sequence
gaattcatgtctatagttctaactactcctaacataagaactcagcaaac
atgttttattgttgatagttcagccaaatcgtcctagcatttagaattta
gaatggtccttagaatttaacagttatcatcgccaggtcaaagctcaaat
gagaggccatcaaaatccatatggcattctgtcctgatgacatgcttcta
caaggaccaaaggattgctttctaaattataactcctaaatctatcaggg
ctaaggagggtgtctagaagacacaaaagcagggtactaacttccaaatc
ctaggcttgtgagtgatcctcacagccataaacttaaaagatcacacacc
tgtcattgccagaagtcaataagctcacgcctccatttattcctatgttc
ccctgtaaatgtctgttagggtttctaaaaggcagcagaggaaagagaat
gaaaaaaaaaacaaagcatgtaagggaatctcaaagacctgaggtgattt
aaagtattacttggtctttacacgttatttgtcagagcaataacaaagac
tgaagcaattttcaagctcaaatcccattaggtaaatgaagaattgcaat
tgcattaattaacttagactacaatattcttataggtttactggacattc
tcatcaatgttagatctaatttcttattgtatatatatatatatatatat
atatatatatatatatatatatatatattcctaggttccactatgcagag
tgatttctactttttattttaatgatgtaattaaaaagtgattcataaat
acttggcataagaatatcttttattgataaaatgttatacataccatgta
atttttaataaaaattgattatagggtatgttgattctttttttgtcctg
atcttttcccaaaattatttttattcactttgaaattgttgactactcag
ctttgcgaaacacagaacaatctgaagttccttttttctttttgtatccc
atccccccacacctgctgctgtattcaccaatttgctgatcatcaagggt
tccgtgctgtcttcactcctggtttgtttacccttaataaaggtgattgg
gcactgaatcttcttgttatgaagagta

gaattcaataaacattgaataagcaagctatcttaaaaaaaaagtctccc
ttgggtggattatatgaatagactagttaaatcacagaggaaggatttac
tacaggttatgtcaaacataaataaccaccaagacagacagacagacaga
cagacagacagacacacacacacacacacacacacacacacacacacaca
cacacacacacacggagccctcctagcattgtgggtggctgtctgtagca
tcctggctgtctaaagcattctggctgtgtgaagaattctgtctgtctta
tgtagcatcttagctgtctatagcaccctggctgcctgtagcatgctgtc
tgtctgtagcatcatggctgccttctgtagcttccccctcttttatttat
catcacttctaagcaacttttcatggcagatttttgtttgtttgaaaaaa
atttcaatctcaaaatcatttgcaaactcaattcccatttgcactttcta
tcacccatgcatttttcatatttctttttaatgtgcaattttctaacaaa
tgagttgttacagaagagtggatagttatgtatacagagaaagaaatttt
tgtataactttctgcaccattcctttaagaattacataatgtatatgcta
attatttctgagacctgctgaaaagtttttaattggcaataggcatggtg
aatgattattccaacaaacatttgcaaatataagagaattgattcaataa
ggttgaattgaaactgagaattactgcttattcattcattagtagtgttg
tttatttcctctaacagtgaactccatctcaacccaatggatatatattc
aagaaaatttgttgtaaactccatacatgaacattgctctgtgtatgccc
atggctgagtttgaaaatgggccaaactatgttgggactcagttctggag
gaaaatgatctctctctctctctctctctctctctctctctctctctctc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_139597279_139598377
seq2: B6Ng01-256L10.b_46_1173 (reverse)

seq1  TACTCTTCATTAACAGAAGATTCAGTG-CCAATCAC--TTATTAGGGGTA  47
      |||||||||| |  ||||||||||||| ||||||||  |||||| |||||
seq2  TACTCTTCATAACAAGAAGATTCAGTGCCCAATCACCTTTATTAAGGGTA  50

seq1  AAC-AACAGGGAGTGAAGACAGCACGGAA-CCTTGATGATCAGCAA--TG  93
      ||| |||  |||||||||||||||||||| ||||||||||||||||  ||
seq2  AACAAACCAGGAGTGAAGACAGCACGGAACCCTTGATGATCAGCAAATTG  100

seq1  GTGAATACAGCAGCA-GTGT-GGGGGATGGGATAC-AAAAGAAAAA--GG  138
      ||||||||||||||| |||| |||||||||||||| ||||||||||  | 
seq2  GTGAATACAGCAGCAGGTGTGGGGGGATGGGATACAAAAAGAAAAAAGGA  150

seq1  ACTTCAGAT--GTCTGTG-TTCGC-AAGCTGAGTAGTCA--CATTTC-AA  181
      |||||||||   |||||| ||||| ||||||||||||||   ||||| ||
seq2  ACTTCAGATTGTTCTGTGTTTCGCAAAGCTGAGTAGTCAACAATTTCAAA  200

seq1  GTG-ATAAAA--TATTTTGGG-AAAGATCAGGACAAAAAA--GATCAACA  225
      ||| ||||||   |||||||| ||||||||||||||||||   |||||||
seq2  GTGAATAAAAATAATTTTGGGAAAAGATCAGGACAAAAAAAGAATCAACA  250

seq1  TA-CCTAT-ATCAA-TTTTATTAAAAATTACATGGTATGTATAACA-TTT  271
      || ||||| ||||| ||||||||||||||||||||||||||||||| |||
seq2  TACCCTATAATCAATTTTTATTAAAAATTACATGGTATGTATAACATTTT  300

seq1  ATCAATAAAAGATATTCTTATGCCAAGTATTTATGAATCACTTTTTAATT  321
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAAAGATATTCTTATGCCAAGTATTTATGAATCACTTTTTAATT  350

seq1  ACATCATTAAAATAAAAAGTAGAAATCACTCTGCATAGTGGAACCTAGGA  371
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTAAAATAAAAAGTAGAAATCACTCTGCATAGTGGAACCTAGGA  400

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATAC  421
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAC  450

seq1  AATAAGAAATTAGATCTAACATTGATGAGAATGTCCAGTAAACCTATAAG  471
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAAATTAGATCTAACATTGATGAGAATGTCCAGTAAACCTATAAG  500

seq1  AATATTGTAGTCTAAGTTAATTAATGCAATTGCAATTCTTCATTTACCTA  521
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTAGTCTAAGTTAATTAATGCAATTGCAATTCTTCATTTACCTA  550

seq1  ATGGGATTTGAGCTTGAAAATTGCTTCAGTCTTTGTTATTGCTCTGACAA  571
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTTGAGCTTGAAAATTGCTTCAGTCTTTGTTATTGCTCTGACAA  600

seq1  ATAACGTGTAAAGACCAAGTAATACTTTAAATCACCTCAGGTCTTTGAGA  621
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGTGTAAAGACCAAGTAATACTTTAAATCACCTCAGGTCTTTGAGA  650

seq1  TTCCCTTACATGCTTTGTTTTTTTTTTCATTCTCTTTCCTCTGCTGCCTT  671
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTACATGCTTTGTTTTTTTTTTCATTCTCTTTCCTCTGCTGCCTT  700

seq1  TTAGAAACCCTAACAGACATTTACAGGGGAACATAGGAATAAATGGAGGC  721
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACCCTAACAGACATTTACAGGGGAACATAGGAATAAATGGAGGC  750

seq1  GTGAGCTTATTGACTTCTGGCAATGACAGGTGTGTGATCTTTTAAGTTTA  771
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTTATTGACTTCTGGCAATGACAGGTGTGTGATCTTTTAAGTTTA  800

seq1  TGGCTGTGAGGATCACTCACAAGCCTAGGATTTGGAAGTTAGTACCCTGC  821
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGAGGATCACTCACAAGCCTAGGATTTGGAAGTTAGTACCCTGC  850

seq1  TTTTGTGTCTTCTAGACACCCTCCTTAGCCCTGATAGATTTAGGAGTTAT  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTCTTCTAGACACCCTCCTTAGCCCTGATAGATTTAGGAGTTAT  900

seq1  AATTTAGAAAGCAATCCTTTGGTCCTTGTAGAAGCATGTCATCAGGACAG  921
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGAAAGCAATCCTTTGGTCCTTGTAGAAGCATGTCATCAGGACAG  950

seq1  AATGCCATATGGATTTTGATGGCCTCTCATTTGAGCTTTGACCTGGCGAT  971
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATATGGATTTTGATGGCCTCTCATTTGAGCTTTGACCTGGCGAT  1000

seq1  GATAACTGTTAAATTCTAAGGACCATTCTAAATTCTAAATGCTAGGACGA  1021
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTGTTAAATTCTAAGGACCATTCTAAATTCTAAATGCTAGGACGA  1050

seq1  TTTGGCTGAACTATCAACAATAAAACATGTTTGCTGAGTTCTTATGTTAG  1071
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTGAACTATCAACAATAAAACATGTTTGCTGAGTTCTTATGTTAG  1100

seq1  GAGTAGTTAGAACTATAGACATGAATTC  1099
      ||||||||||||||||||||||||||||
seq2  GAGTAGTTAGAACTATAGACATGAATTC  1128


seq1: chr3_139421111_139422111
seq2: B6Ng01-256L10.g_65_1065

seq1  GAATTCAATAAACATTGAATAAGCAAGCTATCTTAAAAAAAAAGTCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAACATTGAATAAGCAAGCTATCTTAAAAAAAAAGTCTCCC  50

seq1  TTGGGTGGATTATATGAATAGACTAGTTAAATCACAGAGGAAGGATTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGATTATATGAATAGACTAGTTAAATCACAGAGGAAGGATTTAC  100

seq1  TACAGGTTATGTCAAACATAAATAACCACCAAGACAGACAGACAGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTTATGTCAAACATAAATAACCACCAAGACAGACAGACAGACAGA  150

seq1  CAGACAGACAGACACACACACACACACACACACACACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGACACACACACACACACACACACACACACACACACACACA  200

seq1  CACACACACACACGGAGCCCTCCTAGCATTGTGGGTGGCTGTCTGTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACGGAGCCCTCCTAGCATTGTGGGTGGCTGTCTGTAGCA  250

seq1  TCCTGGCTGTCTAAAGCATTCTGGCTGTGTGAAGAATTCTGTCTGTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTGTCTAAAGCATTCTGGCTGTGTGAAGAATTCTGTCTGTCTTA  300

seq1  TGTAGCATCTTAGCTGTCTATAGCACCCTGGCTGCCTGTAGCATGCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCATCTTAGCTGTCTATAGCACCCTGGCTGCCTGTAGCATGCTGTC  350

seq1  TGTCTGTAGCATCATGGCTGCCTTCTGTAGCTTCCCCCTCTTTTATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTAGCATCATGGCTGCCTTCTGTAGCTTCCCCCTCTTTTATTTAT  400

seq1  CATCACTTCTAAGCAACTTTTCATGGCAGATTTTTGTTTGTTTGAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTCTAAGCAACTTTTCATGGCAGATTTTTGTTTGTTTGAAAAAA  450

seq1  ATTTCAATCTCAAAATCATTTGCAAACTCAATTCCCATTTGCACTTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATCTCAAAATCATTTGCAAACTCAATTCCCATTTGCACTTTCTA  500

seq1  TCACCCATGCATTTTTCATATTTCTTTTTAATGTGCAATTTTCTAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCATGCATTTTTCATATTTCTTTTTAATGTGCAATTTTCTAACAAA  550

seq1  TGAGTTGTTACAGAAGAGTGGATAGTTATGTATACAGAGAAAGAAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGTTACAGAAGAGTGGATAGTTATGTATACAGAGAAAGAAATTTT  600

seq1  TGTATAACTTTCTGCACCATTCCTTTAAGAATTACATAATGTATATGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACTTTCTGCACCATTCCTTTAAGAATTACATAATGTATATGCTA  650

seq1  ATTATTTCTGAGACCTGCTGAAAAGTTTTTAATTGGCAATAGGCATGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCTGAGACCTGCTGAAAAGTTTTTAATTGGCAATAGGCATGGTG  700

seq1  AATGATTATTCCAACAAACATTTGCAAATATAAGAGAATTGATTCAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTATTCCAACAAACATTTGCAAATATAAGAGAATTGATTCAATAA  750

seq1  GGTTGAATTGAAACTGAGAATTACTGCTTATTCATTCATTAGTAGTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAATTGAAACTGAGAATTACTGCTTATTCATTCATTAGTAGTGTTG  800

seq1  TTTATTTCCTCTAACAGTGAACTCCATCTCAACCCAATGGATATATATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCTCTAACAGTGAACTCCATCTCAACCCAATGGATATATATTC  850

seq1  AAGAAAATTTGTTGTAAACTCCATACATGAACATTGCTCTGTGTATGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATTTGTTGTAAACTCCATACATGAACATTGCTCTGTGTATGCCC  900

seq1  ATGGCTGAGTTTGAAAAT-GGCCAAACTATGTGGGAACTCAGTTCTGGAG  949
      |||||||||||||||||| ||||||||||||| || ||||||||||||||
seq2  ATGGCTGAGTTTGAAAATGGGCCAAACTATGTTGGGACTCAGTTCTGGAG  950

seq1  GAAATTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  999
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGA-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  999

seq1  CT  1001
      ||
seq2  CT  1001


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