BAC Information

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BAC

Clone NameB6Ng01-257L13
Chromosome3 (Build37)
Map Location 50,108,743 - 50,299,088
singlet/doubletdoublet
Overlap geneLOC639469, Slc7a11
Upstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628
Downstream geneEG621304, LOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257L13.bB6Ng01-257L13.g
ACCGA063345GA063346
length1,1881,025
definitionB6Ng01-257L13.b B6Ng01-257L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,297,901 - 50,299,088)(50,108,743 - 50,109,775)
sequence
gaattcagttgagttttgttcggttcaatgcaattcggtgaaatgtagtt
gagttcatttgagttcattcagtttctgctgtcagtgtacttcacttcat
ggaattcagtggcagtttttctaagagcaattcagtgagaagctgagaga
ggccagactgattcagtcatcttggagaagagtttgagccagaacagctg
agttgaaccagtccaccaaagttcatcaagagctagaaagaataagctca
ttcaggaggaagcctctgcccagacgacaagtacatcagggaaataaaat
acgtttacacctggagctaaaataagccacaggctcctgcctatagagtg
cttacagagtactagaaaaacaaagaactatagtgtgttagagtgtcagt
aaggacagctcagctcagcaatgcttgaacatttgccgactcacaaaact
gtttatacaaaatcgaaacaaaaaacccacacaaacaaacaaaaagttac
aataatgtgtacttaaattggggttaatatgttgctatttatcactcata
aaaaatcatcactcaaaaacagtttaaaagaatttaagaatgtatacatt
acactttcagtttctattttttattgcaatgatagttactcttttcttag
acaagattaaaaagatgtgttttagacctttcttagcatgccttagagtg
attcataatagttatttacagtttcagttataaacaattaggttccccaa
cttctggagttccttgagcatgcaggtgagcccagaatttcaacattcac
acttaataatgagaagatgatttcacacatttgcttatgttttgcactct
gatattttttcattaaaattactaaattatttcatattattttgtatatt
ttccccaagtctcattaaaatatgacttaaggtcacagatattgcaaaga
tttgttgcacacagtgagtctatgtcaggtcagcaatcaacattttacat
acttgaatatttgaacactgatatctctaatagtatctgcccttgcctta
gaatacatccagactgaaattattagccctatcctgtttgctatcattat
tattgtttaaaagaacgttcatgaattggaaggaataaatatgtccattg
ccagatctactgctcacgtgtcatgttcgatgatgttt
gaattctctccagctagctttcacaatgctactgactctctctgacacgt
tgggatctgcccactagttaaaagcctgaaggtgatgagatagtcgaaga
acagtctcaagatgagctgattttcccttacatggttggcctatacatta
atttctttacccatcactatgataaaactctcaattaagaaataaggagt
gagcatttatttcagcccaggatctaaggagataagttcacataagagaa
agcatgctgacaggtggctatacggtggccagcatataagcctgacaatt
gttaagtcttctactcttaatttgcagcagagagagagagagaatataat
atctaagagcaatcatggaacaacttctatgggtagatgctacttcttgg
tctttacaaggcatctcaaagcaacaaaatcagcaagggaccaagtgttc
atactatttcatatttaaaccagagttccctaagaaacaggaacaaagtt
ttttccggtcagaaaatatacccatcaaagaagaaagggcatactctgat
attcccaagcatagataaaacttacacatgttttatagcccactgatcag
caaaggaggacaggtgttttcagatttgaaacacttgaaatccctttgtc
atgagtagtagtcgatgtgatatcattgaacaaagctgaaaaagaaaaat
gcaattggcttcttggagccatgcagactggcacagcaatggggagatgg
gccatgcatctaagtcattctctgtttcaggaatcactcataggacctga
ctctgaggttcaagatccctcatgttgtattcagtgtcacatttatgaga
tagcaccagcagggcacagatttaatttgacaacattgatactaatcact
gagaaaagctttttaactatgcagagttagagaagctgagagcatggaga
ttcctatgaatgtagcattcctgcagtttgtcctggtagcactgagattt
gagataataaacttaatactcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50297901_50299088
seq2: B6Ng01-257L13.b_39_1226 (reverse)

seq1  AAACATCATCAGACATAACACGTGAGCAGTTTAGTATCTG--CATGAACA  48
      ||||||||||  |||| ||||||||||||  ||| |||||   ||| |||
seq2  AAACATCATCGAACATGACACGTGAGCAG--TAG-ATCTGGCAATGGACA  47

seq1  TATTTATTCTTTCAAAATCATG-ACCTTCTTTTAAACAATAATAAATGAT  97
      ||||||||| ||| || ||||| || ||||||||||||||||| ||||||
seq2  TATTTATTCCTTCCAATTCATGAACGTTCTTTTAAACAATAAT-AATGAT  96

seq1  AGCAAAACAGGATA-GGCT-ATAATTTCATTCTGGATTGTA-TCTAAGGC  144
      ||| |||||||||| |||| ||||||||| |||||| |||| ||||||||
seq2  AGC-AAACAGGATAGGGCTAATAATTTCAGTCTGGA-TGTATTCTAAGGC  144

seq1  AAAGGCAGATAATAATAAGAGATATCAGTGTTCAATTATTCAAGTATGTT  194
      || |||||||| | || |||||||||||||||||| ||||||||||||| 
seq2  AAGGGCAGATACT-ATTAGAGATATCAGTGTTCAAATATTCAAGTATGTA  193

seq1  AAATTTTGATTGCTGACCTGACATAGACTCACTGTTGTGCAAC-AATCTT  243
      |||| ||||||||||||||||||||||||||||| |||||||| ||||||
seq2  AAATGTTGATTGCTGACCTGACATAGACTCACTG-TGTGCAACAAATCTT  242

seq1  TGCAATATCTGTGACCTTAAGTCATATTTTAATGAGACTTGGGGAAAATA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATCTGTGACCTTAAGTCATATTTTAATGAGACTTGGGGAAAATA  292

seq1  TACAAAATAATATGAAATAATTTAGTAATTTTAATGAAAAAATATCAGAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATAATATGAAATAATTTAGTAATTTTAATGAAAAAATATCAGAG  342

seq1  TGCAAAACATAAGCAAATGTGTGAAATCATCTTCTCATTATTAAGTGTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACATAAGCAAATGTGTGAAATCATCTTCTCATTATTAAGTGTGA  392

seq1  ATGTTGAAATTCTGGGCTCACCTGCATGCTCAAGGAACTCCAGAAGTTGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAAATTCTGGGCTCACCTGCATGCTCAAGGAACTCCAGAAGTTGG  442

seq1  GGAACCTAATTGTTTATAACTGAAACTGTAAATAACTATTATGAATCACT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTAATTGTTTATAACTGAAACTGTAAATAACTATTATGAATCACT  492

seq1  CTAAGGCATGCTAAGAAAGGTCTAAAACACATCTTTTTAATCTTGTCTAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCATGCTAAGAAAGGTCTAAAACACATCTTTTTAATCTTGTCTAA  542

seq1  GAAAAGAGTAACTATCATTGCAATAAAAAATAGAAACTGAAAGTGTAATG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGTAACTATCATTGCAATAAAAAATAGAAACTGAAAGTGTAATG  592

seq1  TATACATTTTTAAATTCTTTTAAACTGTTTTTGAGTGATGATTTTTTATG  643
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTCTTAAATTCTTTTAAACTGTTTTTGAGTGATGATTTTTTATG  642

seq1  AGTGATAAATAGCAACATATTAACCCCAATTTAAGTACACATTATTGTAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAAATAGCAACATATTAACCCCAATTTAAGTACACATTATTGTAA  692

seq1  CTTTTTGTTTGTTTGTGTGGGTTTTTTGTTTCGATTTTGTATAAACAGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTTGTTTGTGTGGGTTTTTTGTTTCGATTTTGTATAAACAGTT  742

seq1  TTGTGAGTCGGCAAATGTTCAAGCATTGCTGAGCTGAGCTGTCCTTACTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTCGGCAAATGTTCAAGCATTGCTGAGCTGAGCTGTCCTTACTG  792

seq1  ACACTCTAACACACTATAGTTCTTTGTTTTTCTAGTACTCTGTAAGCACT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTAACACACTATAGTTCTTTGTTTTTCTAGTACTCTGTAAGCACT  842

seq1  CTATAGGCAGGAG-CTGTGGCTTATTTTAGCTCCAGGTGTAAACGTATTT  892
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTATAGGCAGGAGCCTGTGGCTTATTTTAGCTCCAGGTGTAAACGTATTT  892

seq1  TATTTGCCTGATGTACTTGTCGTCTGGGCAGAGGCTTCCTCCTGAATGAG  942
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCTGATGTACTTGTCGTCTGGGCAGAGGCTTCCTCCTGAATGAG  942

seq1  CTTATTCTTTCTAGCTCTTGATGAACTTTGGTGGACTGGTTCAACTCAGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTTTCTAGCTCTTGATGAACTTTGGTGGACTGGTTCAACTCAGC  992

seq1  TGTTCTGGCTCAAACTCTTCTCCAAGATGACTGAATCAGTCTGGCCTCTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGCTCAAACTCTTCTCCAAGATGACTGAATCAGTCTGGCCTCTC  1042

seq1  TCAGCTTCTCACTGAATTGCTCTTAGAAAAACTGCCACTGAATTCCATGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCTCACTGAATTGCTCTTAGAAAAACTGCCACTGAATTCCATGA  1092

seq1  AGTGAAGTACACTGACAGCAGAAACTGAATGAACTCAAATGAACTCAACT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTACACTGACAGCAGAAACTGAATGAACTCAAATGAACTCAACT  1142

seq1  ACATTTCACTGAATTGCATTGAACTGAACAAAACTCAACTGAATTC  1188
      ||||||||| |||||||||||||| |||||||||||||||||||||
seq2  ACATTTCACCGAATTGCATTGAACCGAACAAAACTCAACTGAATTC  1188

seq1: chr3_50108743_50109775
seq2: B6Ng01-257L13.g_64_1088

seq1  GAATTCTCTCCAGCTAGCTTTCACAATGCTACTGACTCTCTCTGACACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCAGCTAGCTTTCACAATGCTACTGACTCTCTCTGACACGT  50

seq1  TGGGATCTGCCCACTAGTTAAAAGCCTGAAGGTGATGAGATAGTCGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTGCCCACTAGTTAAAAGCCTGAAGGTGATGAGATAGTCGAAGA  100

seq1  ACAGTCTCAAGATGAGCTGATTTTCCCTTACATGGTTGGCCTATACATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCAAGATGAGCTGATTTTCCCTTACATGGTTGGCCTATACATTA  150

seq1  ATTTCTTTACCCATCACTATGATAAAACTCTCAATTAAGAAATAAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTACCCATCACTATGATAAAACTCTCAATTAAGAAATAAGGAGT  200

seq1  GAGCATTTATTTCAGCCCAGGATCTAAGGAGATAAGTTCACATAAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTATTTCAGCCCAGGATCTAAGGAGATAAGTTCACATAAGAGAA  250

seq1  AGCATGCTGACAGGTGGCTATACGGTGGCCAGCATATAAGCCTGACAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTGACAGGTGGCTATACGGTGGCCAGCATATAAGCCTGACAATT  300

seq1  GTTAAGTCTTCTACTCTTAATTTGCAGCAGAGAGAGAGAGAGAATATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTCTTCTACTCTTAATTTGCAGCAGAGAGAGAGAGAGAATATAAT  350

seq1  ATCTAAGAGCAATCATGGAACAACTTCTATGGGTAGATGCTACTTCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGAGCAATCATGGAACAACTTCTATGGGTAGATGCTACTTCTTGG  400

seq1  TCTTTACAAGGCATCTCAAAGCAACAAAATCAGCAAGGGACCAAGTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACAAGGCATCTCAAAGCAACAAAATCAGCAAGGGACCAAGTGTTC  450

seq1  ATACTATTTCATATTTAAACCAGAGTTCCCTAAGAAACAGGAACAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTTCATATTTAAACCAGAGTTCCCTAAGAAACAGGAACAAAGTT  500

seq1  TTTTCCGGTCAGAAAATATACCCATCAAAGAAGAAAGGGCATACTCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGGTCAGAAAATATACCCATCAAAGAAGAAAGGGCATACTCTGAT  550

seq1  ATTCCCAAGCATAGATAAAACTTACACATGTTTTATAGCCCACTGATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAAGCATAGATAAAACTTACACATGTTTTATAGCCCACTGATCAG  600

seq1  CAAAGGAGGACAGGTGTTTTCAGATTTGAAACACTTGAAATCCCTTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGGACAGGTGTTTTCAGATTTGAAACACTTGAAATCCCTTTGTC  650

seq1  ATGAGTAGTAGTCGATGTGATATCATTGAACAAAGCTGAAAAAGAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAGTAGTCGATGTGATATCATTGAACAAAGCTGAAAAAGAAAAAT  700

seq1  GCAGTTGGCTTCTTGGAGCCATGCAGACTGGCACAGCAATGGGGAGATGG  750
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGGCTTCTTGGAGCCATGCAGACTGGCACAGCAATGGGGAGATGG  750

seq1  GCCATGCATCTAAGTCATTCTCTGTTTCAGGAATCACTCATAGGACCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCATCTAAGTCATTCTCTGTTTCAGGAATCACTCATAGGACCTGA  800

seq1  CTCTGAGGTTCAGGATCCCTCATGTTTGTATTCATTGTCACATTTATGAG  850
      |||||||||||| ||||||||||| ||||||||| |||||||||||||||
seq2  CTCTGAGGTTCAAGATCCCTCATG-TTGTATTCAGTGTCACATTTATGAG  849

seq1  ATAGCACCAGCAGGGCACAGA-TTAATTTGACAACATTGATACTAATCAC  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAGCACCAGCAGGGCACAGATTTAATTTGACAACATTGATACTAATCAC  899

seq1  TGAGAAAAGCTTTTTAACTATGCAGAAGTTTAAAGAAGCTGAGAGCATGG  949
      ||||||||||||||||||||||||||   ||| |||||||||||||||||
seq2  TGAGAAAAGCTTTTTAACTATGCAGA--GTTAGAGAAGCTGAGAGCATGG  947

seq1  AGATTCCTAATGATGTTAGCATTCCTGAAGTTTTGTCTTGGTAGCACTGA  999
      |||||||| ||||   ||||||||||| || |||||| ||||||||||| 
seq2  AGATTCCT-ATGAATGTAGCATTCCTGCAG-TTTGTCCTGGTAGCACTG-  994

seq1  AGAATTTTGAGATAATAAACTTAATTACTCACTT  1033
      |||  ||||||||||||||||||| |||||||||
seq2  AGA--TTTGAGATAATAAACTTAA-TACTCACTT  1025