BAC Information

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BAC

Clone NameB6Ng01-257O04
Chromosome3 (Build37)
Map Location 69,932,289 - 70,055,721
singlet/doubletdoublet
Overlap genenone
Upstream geneArl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
Downstream geneLOC100041384, LOC625868, LOC670542, EG625901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257O04.bB6Ng01-257O04.g
ACCGA063468GA063469
length1,003800
definitionB6Ng01-257O04.b B6Ng01-257O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,932,289 - 69,933,046)(70,055,141 - 70,055,721)
sequence
gaattctttttttttttttttttggctctgaacaccattttttaatagtg
ttatttggttctctcgagtgtaacttcttgagttctttgtatgtattgga
tattcgccctcggaattgaagtttttaataagcttgtgctgtcacattga
ttataatgctgtggcttgctttggggacagtttttttaaaaagtaaattt
agagagtattctgcctttaaaagaatattctctaggctattttaattcag
ttacatccttttatttttttctttttaaaatttatttctaatatatttta
attgaaatataattacattacttctcccttcccacgtctctgtctgtttc
ccaattcctttccctccaactctttccattccttctcaccttcaaattga
tactcccttctttctgattactattgttatatataaatatatgtatgctc
gaatataaaaacaaagcagctgaatacatttcgattgtgtgtatatggct
tgtgtgtatatgattcactttataccttatatccccgagggtggctaact
cctagccgtcatctttgccagtagttcctcatcctggggtggattctctg
agatttccccttttctgtattagcacctttattgatgcagcagccactgt
gtagatctggtatatgcaggcatttctaggagacactgtttcatatcatg
cttcttgccattctggctcttacaatctttctgcctcatcttctgcagtg
ccatagatgcaggagctgtggtgtagctgtctccattgggctgggttcct
agtgatccattgattatgaatttctgtcatggtttctatctgctatgaaa
agaggggtgatagttacacttatctgggaggatcaggataaggtttagaa
tgtagcttggaattgtgctggtctagcaagtggtattagtagagtcttct
tctagatccatggcttcactagcctgggaaatgtttttagtatcagcagt
ttt
gaattctaaatatttacaatatttacatttactctcatacatctaggctt
ctctcagccctggtcacagaagcctctttatgcaatatccaacagccaat
ggagaaatgcagaagtgttcagagtcagagactgggtgctcagatctgaa
tagaactctgcatcaggcttccctgcaccaagacccagggagtactgcag
aacaggaagtcaaaaaaaaaaaaaaaacgtaatggccaggggatgacaag
gagggatgtgaactattgtcttctgcacatggctatcatgttcatgaaat
cgcagcagctgtgattatctgcaaaagacctttgcaagatcaagctagcc
aaaattcaagcacagatagggtaaatgaactggaaaccactactactcac
actgagaaaatattggcaattggtagtttgggggtaagagagaatcattc
ttacttgatgatatgttagtggctgtgtagcccctcccccttgcatatat
gagcaacattaactggacttcgtgggttataaaaaaaataaaagacatga
agctagaagacagacacattgaaggagatatggagaaagttagagacaga
aaggtatcagctatgacctctacataaataatatacagataggtatattt
cattgtatacatgcgtggcactctcaagaatgaagacagtatattacccc
ccccccaaaaaaaaaacagagaatcaagaaatggaagcaatgattactgt
gctggtgctgatagtggtggtgacggatgtgatggtggtagtggtgataa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_69932289_69933046
seq2: B6Ng01-257O04.b_42_799

seq1  GAATTCTTTTTTTTTTTTTTTTTGGCTCTGAACACCATTTTTTAATAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTTTTTTTTGGCTCTGAACACCATTTTTTAATAGTG  50

seq1  TTATTTGGTTCTCTCGAGTGTAACTTCTTGAGTTCTTTGTATGTATTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGTTCTCTCGAGTGTAACTTCTTGAGTTCTTTGTATGTATTGGA  100

seq1  TATTCGCCCTCGGAATTGAAGTTTTTAATAAGCTTGTGCTGTCACATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGCCCTCGGAATTGAAGTTTTTAATAAGCTTGTGCTGTCACATTGA  150

seq1  TTATAATGCTGTGGCTTGCTTTGGGGACAGTTTTTTTAAAAAGTAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGCTGTGGCTTGCTTTGGGGACAGTTTTTTTAAAAAGTAAATTT  200

seq1  AGAGAGTATTCTGCCTTTAAAAGAATATTCTCTAGGCTATTTTAATTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTATTCTGCCTTTAAAAGAATATTCTCTAGGCTATTTTAATTCAG  250

seq1  TTACATCCTTTTATTTTTTTCTTTTTAAAATTTATTTCTAATATATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCCTTTTATTTTTTTCTTTTTAAAATTTATTTCTAATATATTTTA  300

seq1  ATTGAAATATAATTACATTACTTCTCCCTTCCCACGTCTCTGTCTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATATAATTACATTACTTCTCCCTTCCCACGTCTCTGTCTGTTTC  350

seq1  CCAATTCCTTTCCCTCCAACTCTTTCCATTCCTTCTCACCTTCAAATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCCTTTCCCTCCAACTCTTTCCATTCCTTCTCACCTTCAAATTGA  400

seq1  TACTCCCTTCTTTCTGATTACTATTGTTATATATAAATATATGTATGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCTTCTTTCTGATTACTATTGTTATATATAAATATATGTATGCTC  450

seq1  GAATATAAAAACAAAGCAGCTGAATACATTTCGATTGTGTGTATATGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAAAAACAAAGCAGCTGAATACATTTCGATTGTGTGTATATGGCT  500

seq1  TGTGTGTATATGATTCACTTTATACCTTATATCCCCGAGGGTGGCTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATATGATTCACTTTATACCTTATATCCCCGAGGGTGGCTAACT  550

seq1  CCTAGCCGTCATCTTTGCCAGTAGTTCCTCATCCTGGGGTGGATTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCGTCATCTTTGCCAGTAGTTCCTCATCCTGGGGTGGATTCTCTG  600

seq1  AGATTTCCCCTTTTCTGTATTAGCACCTTTATTGATGCAGCAGCCACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCCCTTTTCTGTATTAGCACCTTTATTGATGCAGCAGCCACTGT  650

seq1  GTAGATCTGGTATATGCAGGCATTTCTAGGAGACACTGTTTCATATCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCTGGTATATGCAGGCATTTCTAGGAGACACTGTTTCATATCATG  700

seq1  CTTCTTGCCATTCTGGCTCTTACAATCTTTCTGCCTCATCTTCTGCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCCATTCTGGCTCTTACAATCTTTCTGCCTCATCTTCTGCAGTG  750

seq1  CCATAGAT  758
      ||||||||
seq2  CCATAGAT  758

seq1: chr3_70055141_70055721
seq2: B6Ng01-257O04.g_285_865 (reverse)

seq1  TTATCACCACTACCACCATCACATCCGTCACCACCACTATCAGCACCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACCACTACCACCATCACATCCGTCACCACCACTATCAGCACCAGC  50

seq1  ACAGTAATCATTGCTTCCATTTCTTGATTCTCTGTTTTTTTTTTGGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATCATTGCTTCCATTTCTTGATTCTCTGTTTTTTTTTTGGGGGG  100

seq1  GGGGTAATATACTGTCTTCATTCTTGAGAGTGCCACGCATGTATACAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAATATACTGTCTTCATTCTTGAGAGTGCCACGCATGTATACAATG  150

seq1  AAATATACCTATCTGTATATTATTTATGTAGAGGTCATAGCTGATACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACCTATCTGTATATTATTTATGTAGAGGTCATAGCTGATACCTT  200

seq1  TCTGTCTCTAACTTTCTCCATATCTCCTTCAATGTGTCTGTCTTCTAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTAACTTTCTCCATATCTCCTTCAATGTGTCTGTCTTCTAGCT  250

seq1  TCATGTCTTTTATTTTTTTTATAACCCACGAAGTCCAGTTAATGTTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTTTTATTTTTTTTATAACCCACGAAGTCCAGTTAATGTTGCTC  300

seq1  ATATATGCAAGGGGGAGGGGCTACACAGCCACTAACATATCATCAAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCAAGGGGGAGGGGCTACACAGCCACTAACATATCATCAAGTAA  350

seq1  GAATGATTCTCTCTTACCCCCAAACTACCAATTGCCAATATTTTCTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATTCTCTCTTACCCCCAAACTACCAATTGCCAATATTTTCTCAGT  400

seq1  GTGAGTAGTAGTGGTTTCCAGTTCATTTACCCTATCTGTGCTTGAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAGTAGTGGTTTCCAGTTCATTTACCCTATCTGTGCTTGAATTTT  450

seq1  GGCTAGCTTGATCTTGCAAAGGTCTTTTGCAGATAATCACAGCTGCTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCTTGATCTTGCAAAGGTCTTTTGCAGATAATCACAGCTGCTGCG  500

seq1  ATTTCATGAACATGATAGCCATGTGCAGAAGACAATAGTTCACATCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGAACATGATAGCCATGTGCAGAAGACAATAGTTCACATCCCTC  550

seq1  CTTGTCATCCCCTGGCCATTACGTTTTTTTT  581
      |||||||||||||||||||||||||||||||
seq2  CTTGTCATCCCCTGGCCATTACGTTTTTTTT  581