BAC Information

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BAC

Clone NameB6Ng01-258F22
Chromosome3 (Build37)
Map Location 134,435,576 - 134,586,499
singlet/doubletdoublet
Overlap geneTacr3
Upstream geneEG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234
Downstream geneLOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258F22.bB6Ng01-258F22.g
ACCGA063824GA063825
length1,1681,199
definitionB6Ng01-258F22.b B6Ng01-258F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,435,576 - 134,436,529)(134,585,297 - 134,586,499)
sequence
gaattctttgtttagctctgtaccccatttttaaatgagatcatttgatt
ttctgcacccaccgtcttgagttctttgtatatattgaatattagtcccc
tattagatttaggattggtaaagaacctttcccagtctgttggtggcctt
tttgtcttattgacagtgtcttttgccttacagaagctttgcaattttat
gaggtcccatttatcgattatcttatagcataagccaatgctgttctgtt
cagggatttttcccctgtgcccatatctttgaggcttttccccactttct
cctctataaattttagtgtccctggttttatgtggagttaaaggcacaga
ttagaaatagcaaatgaaacctcggcaaggtggtgcacacctttaatccc
agcacttgggaggcagaggcaggtggatttctgagttcaaggccaaccat
ggtctacagaataagtttcaggacagtcagggcttcacagagaaaccctg
cctagaaaaaaaaaaggaaatgaaaatactcataaggcaaatatccaaga
gaaagcaggcatatgttttcaaaggtcttccctatgcagttacatggaga
ttctcttaattatccctgggacaaaagatgataacacaaaagatgcacac
cattcaggagttcttacagaatgtttgtgatttcctgggtttatattgaa
ggccaatcatgttactgagtagaaaagagattttctatttagatcttggt
cacactctgagataaagcacgatattcctgttagaggagtgactactcct
aaggaggtcaagtttaccaaatcaagaatatagttaaactgagtcctaaa
taagagtcctatactatgatgtatggcataggtagatgtccatgaacaca
agggatcttaagagttaactaatcttgtactactcatgcagactaagaaa
tcgaagttaaaaacccatgggcagagaaatctaggggattattcagtggt
tcctagattttaaatatgaatagctgagaaagctttttgttagagacttt
gcactgatctggactattgtgaaaaaaataggatacactgtttagtcttc
acgctgttctcaacagtctaacaaaaacacggtttaatggacctattcct
agagcacatggaaagtat
gaattcagaaaaccatcctgggaaatataatgacagaggacaagtgcatt
acctggatgcttagagcataatgacaataataagaatgtaagaaccttgt
aaaatgcacagttctgtgaggatatgaacatttgtcaataaaataaaaat
atttatgaacatggacttgatattgcaataattagctgaatgcaagatct
agctatatgctgaagggatactggattgaatgaagttgggaataagaata
tcccactattccttgaacaaatgatgtgagcttctaccctgcacgattcc
tcttgaaactccaccagcaaaacactctgcctctagatgtttccatggtg
aatgctctcggcttcctgaagccttcacacagctgtcaatctttttcaag
actcttatttagtaatgtgacctgctgtctttctagcccaactagaacca
ctttgtatgtgcccaattttaaatcttatttgttatgttttgctctttat
atttttactcctttactgatgtattctagacacatagatggcaattaaac
ataatgagttcttaaaactttaaaaataagagaatgaaagtgaatgtaac
tgggaagatattaaagggcacacttgtgggtaaatggtgcccaaggttat
actcagtaatgtggtctgtgtcacttagtcattaagttttgaattgacat
aacaacatataacaagttatttattgttatttcttctttatgggaaataa
acttaggtaaatagagagaaaaaaatgaatatacaatcaatttaaaatta
tactctttggatgaagcaatatatttcattgtgagcaaacaaacaaacaa
gagtcagaaaaccacccttgagactggaatgtggagcttactgggagtcc
tttatagggaacaagtcaccagagaataaagtagttctgcagtaaaactg
agtgaagattcattaaggctatcagtgtatctgtaagtggattcctgcca
ttgcagggaaggacttgaaaaagatgggtacactgaaatgttgtgtggag
atgagagggccttgaaatattccagttcacagcatagtatagggggagga
gctgatactaaaattctacacatgttccctcgagctcttttgcaagatct
gaagtgttattgaaggttataagaagatggaatctcttaggaaacccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_134435576_134436529
seq2: B6Ng01-258F22.b_263_1214

seq1  ATTATCTTATAGCATAAGCCAATGCTGTTCTGTTCAGGGATTTTTCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTATAGCATAAGCCAATGCTGTTCTGTTCAGGGATTTTTCCCCT  50

seq1  GTGCCCATATCTTTGAGGCTTTTCCCCACTTTCTCCTCTATAAATTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCATATCTTTGAGGCTTTTCCCCACTTTCTCCTCTATAAATTTTAG  100

seq1  TGTCCCTGGTTTTATGTGGAGTTAAAGGCACAGATTAGAAATAGCAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGGTTTTATGTGGAGTTAAAGGCACAGATTAGAAATAGCAAATG  150

seq1  AAACCTCGGCAAGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCGGCAAGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGCAG  200

seq1  AGGCAGGTGGATTTCTGAGTTCAAGGCCAACCATGGTCTACAGAATAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGATTTCTGAGTTCAAGGCCAACCATGGTCTACAGAATAAGT  250

seq1  TTCAGGACAGTCAGGGCTTCACAGAGAAACCCTGCCTAGAAAAAAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACAGTCAGGGCTTCACAGAGAAACCCTGCCTAGAAAAAAAAAAG  300

seq1  GAAATGAAAATACTCATAAGGCAAATATCCAAGAGAAAGCAGGCATATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAAATACTCATAAGGCAAATATCCAAGAGAAAGCAGGCATATGT  350

seq1  TTTCAAAGGTCTTCCCTATGCAGTTACATGGAGATTCTCTTAATTATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGGTCTTCCCTATGCAGTTACATGGAGATTCTCTTAATTATCCC  400

seq1  TGGGACAAAAGATGATAACACAAAAGATGCACACCATTCAGGAGTTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAAAAGATGATAACACAAAAGATGCACACCATTCAGGAGTTCTTA  450

seq1  CAGAATGTTTGTGATTTCCTGGGTTTATATTGAAGGCCAATCATGTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTTTGTGATTTCCTGGGTTTATATTGAAGGCCAATCATGTTACT  500

seq1  GAGTAGAAAAGAGATTTTCTATTTAGATCTTGGTCACACTCTGAGATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAAAAGAGATTTTCTATTTAGATCTTGGTCACACTCTGAGATAAA  550

seq1  GCACGATATTCCTGTTAGAGGAGTGACTACTCCTAAGGAGGTCAAGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGATATTCCTGTTAGAGGAGTGACTACTCCTAAGGAGGTCAAGTTTA  600

seq1  CCAAATCAAGAATATAGTTAAACTGAGTCCTAAATAAGAGTCCTATACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCAAGAATATAGTTAAACTGAGTCCTAAATAAGAGTCCTATACTA  650

seq1  TGATGTATGGCATAGGTAGATGTCCATGAACACAA-GGATCTTAAGAGTT  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGATGTATGGCATAGGTAGATGTCCATGAACACAAGGGATCTTAAGAGTT  700

seq1  AACTAATCTTGTACTACTCATGCAGACTAAGAAATCGAAGTTTAAAAACC  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACTAATCTTGTACTACTCATGCAGACTAAGAAATCGAAG-TTAAAAACC  749

seq1  CAT-GGCAGAGAAATCTAGGGGATTATTCAGTGGTTCCTAAGATTTTAAA  798
      ||| ||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  CATGGGCAGAGAAATCTAGGGGATTATTCAGTGGTTCCT-AGATTTT-AA  797

seq1  ATATGAATAGCTGAGAAAGC-TTTTGTTAGAGACTTTGCACTGAATCTGA  847
      |||||||||||||||||||| |||||||||||||||||||||| ||||| 
seq2  ATATGAATAGCTGAGAAAGCTTTTTGTTAGAGACTTTGCACTG-ATCTGG  846

seq1  ACTATTGTGAAAAAAATAGGATACACTGTTTAAGTCTTCACGCTGTCTTC  897
      ||||||||||||||||||||||||||||||| ||||||||||||||  ||
seq2  ACTATTGTGAAAAAAATAGGATACACTGTTT-AGTCTTCACGCTGTTCTC  895

seq1  AACAGTCTAAC-AAAACAC-GTTGTATGGCACTATTCCTAGAGCAACATG  945
      ||||||||||| ||||||| |||  ||||  ||||||||||||| |||||
seq2  AACAGTCTAACAAAAACACGGTTTAATGGACCTATTCCTAGAGC-ACATG  944

seq1  AAAAAGTAT  954
        |||||||
seq2  -GAAAGTAT  952

seq1: chr3_134585297_134586499
seq2: B6Ng01-258F22.g_67_1265 (reverse)

seq1  TGGGTTTTCCTAAGA---TCCAT-TTCTTATACACTTCAAATACACTTCT  46
      |||| ||||||||||   ||||| ||||||||  ||||||  ||||||| 
seq2  TGGGGTTTCCTAAGAGATTCCATCTTCTTATAACCTTCAATAACACTTC-  49

seq1  AGATCCTTTGCAAAGAGGCCTGAGGGACTATGTGTAG-ATTTTAGTATCA  95
      |||||  |||||||   ||  ||||||  |||||||| ||||||||||||
seq2  AGATC--TTGCAAAAGAGCTCGAGGGAACATGTGTAGAATTTTAGTATCA  97

seq1  GCTCCTCCCCTTATACTATGCCTGTGAACTGGAAATTATTTCAAGCCCCT  145
      |||||||||| ||||||||| |||||||||||||  ||||||||| ||||
seq2  GCTCCTCCCCCTATACTATG-CTGTGAACTGGAA--TATTTCAAGGCCCT  144

seq1  CTTCCATCTCCACAC-ACATTTCAGTTGTACCCATCTTTTTCAAGTCCTT  194
      ||  ||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  CT--CATCTCCACACAACATTTCAG-TGTACCCATCTTTTTCAAGTCCTT  191

seq1  TCCCCTGCAATGGCAGGAATCCACTTACAGATACACTGATAGCCTTAATG  244
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --CCCTGCAATGGCAGGAATCCACTTACAGATACACTGATAGCCTTAATG  239

seq1  AATCTTCACTCAGTTTTACTGCAGAACTACTTTATTCTCTGGTGACTTGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCACTCAGTTTTACTGCAGAACTACTTTATTCTCTGGTGACTTGT  289

seq1  TCCCTATAAAGGACT-CCAGTAAGCTCCACATTCCAGTCTCAAGGGTGGT  343
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCCTATAAAGGACTCCCAGTAAGCTCCACATTCCAGTCTCAAGGGTGGT  339

seq1  TTTCTGACTCTTGTTTGTTTGTTTGCTCACAATGAAATATATTGCTTCAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACTCTTGTTTGTTTGTTTGCTCACAATGAAATATATTGCTTCAT  389

seq1  CCAAAGAGTATAATTTTAAATTGATTGTATATTCATTTTTTTCTCTCTAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGTATAATTTTAAATTGATTGTATATTCATTTTTTTCTCTCTAT  439

seq1  TTACCTAAGTTTATTTCCCATAAAGAAGAAATAACAATAAATAACTTGTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAAGTTTATTTCCCATAAAGAAGAAATAACAATAAATAACTTGTT  489

seq1  ATATGTTGTTATGTCAATTCAAAACTTAATGACTAAGTGACACAGACCAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGTTATGTCAATTCAAAACTTAATGACTAAGTGACACAGACCAC  539

seq1  ATTACTGAGTATAACCTTGGGCACCATTTACCCACAAGTGTGCCCTTTAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGAGTATAACCTTGGGCACCATTTACCCACAAGTGTGCCCTTTAA  589

seq1  TATCTTCCCAGTTACATTCACTTTCATTCTCTTATTTTTAAAGTTTTAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCCAGTTACATTCACTTTCATTCTCTTATTTTTAAAGTTTTAAG  639

seq1  AACTCATTATGTTTAATTGCCATCTATGTGTCTAGAATACATCAGTAAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTATGTTTAATTGCCATCTATGTGTCTAGAATACATCAGTAAAG  689

seq1  GAGTAAAAATATAAAGAGCAAAACATAACAAATAAGATTTAAAATTGGGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAAATATAAAGAGCAAAACATAACAAATAAGATTTAAAATTGGGC  739

seq1  ACATACAAAGTGGTTCTAGTTGGGCTAGAAAGACAGCAGGTCACATTACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAAAGTGGTTCTAGTTGGGCTAGAAAGACAGCAGGTCACATTACT  789

seq1  AAATAAGAGTCTTGAAAAAGATTGACAGCTGTGTGAAGGCTTCAGGAAGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAGTCTTGAAAAAGATTGACAGCTGTGTGAAGGCTTCAGGAAGC  839

seq1  CGAGAGCATTCACCATGGAAACATCTAGAGGCAGAGTGTTTTGCTGGTGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGCATTCACCATGGAAACATCTAGAGGCAGAGTGTTTTGCTGGTGG  889

seq1  AGTTTCAAGAGGAATCGTGCAGGGTAGAAGCTCACATCATTTGTTCAAGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAAGAGGAATCGTGCAGGGTAGAAGCTCACATCATTTGTTCAAGG  939

seq1  AATAGTGGGATATTCTTATTCCCAACTTCATTCAATCCAGTATCCCTTCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGGGATATTCTTATTCCCAACTTCATTCAATCCAGTATCCCTTCA  989

seq1  GCATATAGCTAGATCTTGCATTCAGCTAATTATTGCAATATCAAGTCCAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAGCTAGATCTTGCATTCAGCTAATTATTGCAATATCAAGTCCAT  1039

seq1  GTTCATAAATATTTTTATTTTATTGACAAATGTTCATATCCTCACAGAAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAAATATTTTTATTTTATTGACAAATGTTCATATCCTCACAGAAC  1089

seq1  TGTGCATTTTACAAGGTTCTTACATTCTTATTATTGTCATTATGCTCTAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTTTACAAGGTTCTTACATTCTTATTATTGTCATTATGCTCTAA  1139

seq1  GCATCCAGGTAATGCACTTGTCCTCTGTCATTATATTTCCCAGGATGGTT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCAGGTAATGCACTTGTCCTCTGTCATTATATTTCCCAGGATGGTT  1189

seq1  TTCTGAATTC  1203
      ||||||||||
seq2  TTCTGAATTC  1199