BAC Information

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BAC

Clone NameB6Ng01-259C21
Chromosome3 (Build37)
Map Location 69,276,896 - 69,461,319
singlet/doubletdoublet
Overlap genePpm1l, LOC667309, B3galnt1
Upstream geneSchip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14
Downstream geneRpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868, LOC670542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259C21.bB6Ng01-259C21.g
ACCGA064430GA064431
length1731,161
definitionB6Ng01-259C21.b B6Ng01-259C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,461,147 - 69,461,319)(69,276,896 - 69,278,054)
sequence
cagggagtgagtggtcctgaccaaagcccatcctggtcatatttaattaa
aaacttcaccctcgtggggagcttggggttccttactgtttcagtaaagc
agtctcagcctgatgagattgagtctgtcttgtatttatttccagggtta
actggggtggggtggggtgtgtg
gaattctaactcctgcactctcccttcattaccatacttttggctttttg
gctttggtcagggctttttacagtcacatagaggattgccaaaattttta
gttttcagatttgcattgggtctggaacttcaagttagcatttcatgact
gtatcctgctacctcagttgaactgccaacataacagatctttgaagaag
cactctgtagagcactctagaaacagcagggacttaggtccctctgttct
agagagagcaaggctaggacacaaggacctggttagaaagaacagaacat
aaaaatgccactgccgttcacagagcagagattgtaagagctggatggag
gcttacccaggtgccttggctctgcatctagttaatgcattttttattac
ttagtaaacccaaattattaatgttcagcttctgatctacacttttctcc
taactaaatatgtaagtggcaataattaagacagtaagtacaattatttg
aaatgaaaaaatgagagttaccccggagcgagatctgtacagagacgatt
atgtctgcactcttaaagtttctacagttgtggaactgcaccacctgcac
aaactgatttaccatcttatacccaaagaaatacttttctttactcgaga
gttggaggacttgactgaaggtgggaaaagtggcgaagggaaagcaagct
ccgtgtgtcaccgggagtctaggggtattgttcctctatgtagttcaata
agcaattatctgttgcacactaagtctgtgggggctgaacctgagaaaca
gcttgatctgacacatgcccagttcatagttgtgctaagaaggaaggaaa
gggaacaggacgggaggacagtgcttttaaaaggcagttttggtagaaga
gtcacgatatgttgatcccaccatttgtttgcagttcacatatatcccta
actggatggtactagtttatatgtaaatgaaatatctctgaccagggatt
tttcagacagcctacacttcccaaacctttcctccttgattggtattctg
acttctcttcttcaagtgcagctcagatcttctttacaagctctatgttg
gaaacatgtcctggtggataaaatttcctatgctgttcttgagtggtcac
ctctggcctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_69461147_69461319
seq2: B6Ng01-259C21.b_50_222 (reverse)

seq1  CACACACCCCACCCCACCCCAGTTAACCCTGGAAATAAATACAAGACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCCCACCCCACCCCAGTTAACCCTGGAAATAAATACAAGACAGA  50

seq1  CTCAATCTCATCAGGCTGAGACTGCTTTACTGAAACAGTAAGGAACCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCTCATCAGGCTGAGACTGCTTTACTGAAACAGTAAGGAACCCCA  100

seq1  AGCTCCCCACGAGGGTGAAGTTTTTAATTAAATATGACCAGGATGGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCCACGAGGGTGAAGTTTTTAATTAAATATGACCAGGATGGGCTT  150

seq1  TGGTCAGGACCACTCACTCCCTG  173
      |||||||||||||||||||||||
seq2  TGGTCAGGACCACTCACTCCCTG  173

seq1: chr3_69276896_69278054
seq2: B6Ng01-259C21.g_65_1225

seq1  GAATTCTAACTCCTGCACTCTCCCTTCATTACCATACTTTTGGCTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACTCCTGCACTCTCCCTTCATTACCATACTTTTGGCTTTTTG  50

seq1  GCTTTGGTCAGGGCTTTTTACAGTCACATAGAGGATTGCCAAAATTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGTCAGGGCTTTTTACAGTCACATAGAGGATTGCCAAAATTTTTA  100

seq1  GTTTTCAGATTTGCATTGGGTCTGGAACTTCAAGTTAGCATTTCATGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGATTTGCATTGGGTCTGGAACTTCAAGTTAGCATTTCATGACT  150

seq1  GTATCCTGCTACCTCAGTTGAACTGCCAACATAACAGATCTTTGAAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTGCTACCTCAGTTGAACTGCCAACATAACAGATCTTTGAAGAAG  200

seq1  CACTCTGTAGAGCACTCTAGAAACAGCAGGGACTTAGGTCCCTCTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTAGAGCACTCTAGAAACAGCAGGGACTTAGGTCCCTCTGTTCT  250

seq1  AGAGAGAGCAAGGCTAGGACACAAGGACCTGGTTAGAAAGAACAGAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGCAAGGCTAGGACACAAGGACCTGGTTAGAAAGAACAGAACAT  300

seq1  AAAAATGCCACTGCCGTTCACAGAGCAGAGATTGTAAGAGCTGGATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCCACTGCCGTTCACAGAGCAGAGATTGTAAGAGCTGGATGGAG  350

seq1  GCTTACCCAGGTGCCTTGGCTCTGCATCTAGTTAATGCATTTTTTATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCCAGGTGCCTTGGCTCTGCATCTAGTTAATGCATTTTTTATTAC  400

seq1  TTAGTAAACCCAAATTATTAATGTTCAGCTTCTGATCTACACTTTTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAACCCAAATTATTAATGTTCAGCTTCTGATCTACACTTTTCTCC  450

seq1  TAACTAAATATGTAAGTGGCAATAATTAAGACAGTAAGTACAATTATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAATATGTAAGTGGCAATAATTAAGACAGTAAGTACAATTATTTG  500

seq1  AAATGAAAAAATGAGAGTTACCCCGGAGCGAGATCTGTACAGAGACGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAAAATGAGAGTTACCCCGGAGCGAGATCTGTACAGAGACGATT  550

seq1  ATGTCTGCACTCTTAAAGTTTCTACAGTTGTGGAACTGCACCACCTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCACTCTTAAAGTTTCTACAGTTGTGGAACTGCACCACCTGCAC  600

seq1  AAACTGATTTACCATCTTATACCCAAAGAAATACTTTTCTTTACTCGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATTTACCATCTTATACCCAAAGAAATACTTTTCTTTACTCGAGA  650

seq1  GTTGGAGGACTTGACTGAAGGTGGGAAAAGTGGCGAAGGGAAAGCAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGGACTTGACTGAAGGTGGGAAAAGTGGCGAAGGGAAAGCAAGCT  700

seq1  CCGTGTGTCACCGGGAGTCTAGGGGTATTGTTCCTCTATGTAGTTCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTGTCACCGGGAGTCTAGGGGTATTGTTCCTCTATGTAGTTCAATA  750

seq1  AGCAATTATCTGTTGCACACTAAGTCTGT-GGGGCTGAACCTGAGAAACA  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCAATTATCTGTTGCACACTAAGTCTGTGGGGGCTGAACCTGAGAAACA  800

seq1  GCTTGATCTGACACATGCCCAGTTCATAGTTGTGCTAAGAAGGAAGGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATCTGACACATGCCCAGTTCATAGTTGTGCTAAGAAGGAAGGAAA  850

seq1  -GGAACAGGACGGGAGGACAGTGCTTTTAAAAGGCAGTTTTGGTAGAAGA  898
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGGACGGGAGGACAGTGCTTTTAAAAGGCAGTTTTGGTAGAAGA  900

seq1  GTCACGATATGTTGATCCCACCATTTGTTTGCAGTTCACATATATCCCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGATATGTTGATCCCACCATTTGTTTGCAGTTCACATATATCCCTA  950

seq1  ACTGGATGGTACTAGTTTATATGTAAATGAAATATCTCTGACACAGGGAT  998
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTGGATGGTACTAGTTTATATGTAAATGAAATATCTCTGAC-CAGGGAT  999

seq1  TTTTCAGACAAGCCTACACTTCCCAAACCTTTCCTCCTTGAATTGGTA-T  1047
      ||||||||| |||||||||||||||||||||||||||||| ||||||| |
seq2  TTTTCAGAC-AGCCTACACTTCCCAAACCTTTCCTCCTTG-ATTGGTATT  1047

seq1  CTGAC-TCTC-TCCTCAAGTGCAGCTCAAGATC-TCTTTACAAGCTCTAT  1094
      ||||| |||| || ||||||||||||| ||||| ||||||||||||||||
seq2  CTGACTTCTCTTCTTCAAGTGCAGCTC-AGATCTTCTTTACAAGCTCTAT  1096

seq1  GTTGGAAAACATGT-CTGGT-GATAAATTTCTAAATGCTGTTCTGGAAGT  1142
      ||||| |||||||| ||||| |||||| ||    |||||||||| | |||
seq2  GTTGG-AAACATGTCCTGGTGGATAAAATTTCCTATGCTGTTCTTG-AGT  1144

seq1  GGTCACCTCTGCCCTGT  1159
      ||||||||||| |||||
seq2  GGTCACCTCTGGCCTGT  1161