BAC Information

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BAC

Clone NameB6Ng01-259G18
Chromosome2 (Build37)3 (Build37)
Map Location 108,084,126 - 108,084,51770,985,311 - 70,986,380
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcna4
Downstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259G18.bB6Ng01-259G18.g
ACCGA064606GA064607
length4651,183
definitionB6Ng01-259G18.b B6Ng01-259G18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(108,084,126 - 108,084,517)(70,985,311 - 70,986,380)
sequence
gaattcactgattttgaacttgctgcttcagattgactcttatcttgaca
tagattttagggaaaatactactgtcattgccctaaggaattacaaataa
aattactataaaaagaaagtatcaaataactgaactgataattttctttt
ttttttttttttccattttttattaggtatttagctcatttacatttcca
atgctataccaaaagtcccccatacccacccacccccactcccctacctg
cccactccccctttttggccctggcgttcccctgttctggggcatataaa
gttggcaagtccaatgggcctctctttccagtgatggccgactaggccat
cttttgatacatatgcagctagagtcaagagctccggggtactggttagt
tcataatgttgatccacctatagggttgcagatccctttagctccttggg
tactttctctagctc
gaattctcagctgatcattcttgaatggctgagaaacacctaaaaaatgt
tcaacatccttagttatcagggaaatgcaaatcaaaacaaccctgagatt
ccacctcactccagtcagaatggctaagatcaaaaacacagttgtcagca
gatgctggagaggatgtgaagaaaaaggaacttgtggtattgcaagctgg
tacaaccactgtctaaatcaatctggtggttcctcagaaaactggacata
gtactacctgaggacctagcaaaatctctcctgggaacatacccagaaga
tgctccaacttgtaataaggacacatgctccactatattcatagcaacct
tatttataatagtcagaagcgggaaagaacccagatgtccctcaacagag
gaatgggtactgataatgtgttatgtttacacaatggaatactgctcaga
tattaaaaacaacttcatgaaatttgcaggcaaatgggtggaaattgaga
atatcatactgagtgaagtgactcagtcacaaaagaacacacatgttatg
tacttactgataagtttatattagcccaaaagtttggaatacccaagatt
cagctcccttactttttatgagctctcttatcaatgttgtcctatgtctt
ttactctcggaagttaatccctgttgcctgtcaacacttttgctttacca
gagtgctccacttacagaggtgttcctcactgcctcctgtagtctagcct
tcacattaggtgcccttttgcctgggatgctggtcaggaaccattactgg
ggaagtgaagatgattatagaaaggcagcaagaagatgcaagaaacagag
ataggagggctgcctgtggatatcctgccagtgagcaagtgcattttctc
agtgtctttcaaaggcaagcaacacagatcaagtccaattctgggaagaa
taatcaatgactacaatgcttacctgccaatttatcatacatttgaatct
atgttgactaatgtcatttcattcaggctaagaggagttttctcaggata
atactcataagccaggaggaacttagctgggtatatgcaacatcataaaa
ggcaaagaatgtttggcagaactcattcatgattaatcaagccaggagtc
atcctaattactctggaatcctctcccaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_108084126_108084517
seq2: B6Ng01-259G18.b_140_510

seq1  AAATAAAATTACTATAGTTTGCAAGTGGTGAAAAATATATAAAGAAATAT  50
      |||||||||||||||               ||||| |       || |||
seq2  AAATAAAATTACTAT---------------AAAAAGA-------AAGTAT  28

seq1  AAAACAATGGAGAAGAT-ATTTTCTTTTTTCTTTTTTTTTTCATTTTTAA  99
       ||| ||  ||   ||| |||||||||||| ||||||||| ||||||| |
seq2  CAAATAACTGAACTGATAATTTTCTTTTTTTTTTTTTTTTCCATTTTTTA  78

seq1  TTAGGTATTTAGCTCATTTACATTTTCAATGTTATCCCAAAAGTCCCCCA  149
      ||||||||||||||||||||||||| ||||| ||| ||||||||||||||
seq2  TTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCA  128

seq1  TACCCACCCACCCCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCT  199
      |||||||||||||||| |||||||||  ||||||||||||||||||||||
seq2  TACCCACCCACCCCCACTCCCCTACCTGCCCACTCCCCCTTTTTGGCCCT  178

seq1  GGCGTTCCACTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTC  249
      |||||||| |||| ||||||||||||||||| ||  ||||||||||||||
seq2  GGCGTTCCCCTGTTCTGGGGCATATAAAGTTGGCAAGTCCAATGGGCCTC  228

seq1  TCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAG  278

seq1  AGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCGCTTATA  349
      ||||||||||||||||||||||||||||||||||||||| ||| | ||||
seq2  AGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGATCCACCTATA  328

seq1  GGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTC  392
      ||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTC  371

seq1: chr3_70985311_70986380
seq2: B6Ng01-259G18.g_178_1250

seq1  CCAGTCAGAATGGCTAAGATCAAAAACACAGTTGTCAGCAGATGCTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGAATGGCTAAGATCAAAAACACAGTTGTCAGCAGATGCTGGAG  50

seq1  AGGATGTGAAGAAAAAGGAACTTGTGGTATTGCAAGCTGGTACAACCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGAAGAAAAAGGAACTTGTGGTATTGCAAGCTGGTACAACCACT  100

seq1  GTCTAAATCAATCTGGTGGTTCCTCAGAAAACTGGACATAGTACTACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAATCAATCTGGTGGTTCCTCAGAAAACTGGACATAGTACTACCTG  150

seq1  AGGACCTAGCAAAATCTCTCCTGGGAACATACCCAGAAGATGCTCCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTAGCAAAATCTCTCCTGGGAACATACCCAGAAGATGCTCCAACT  200

seq1  TGTAATAAGGACACATGCTCCACTATATTCATAGCAACCTTATTTATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAGGACACATGCTCCACTATATTCATAGCAACCTTATTTATAAT  250

seq1  AGTCAGAAGCGGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAGCGGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGGTAC  300

seq1  TGATAATGTGTTATGTTTACACAATGGAATACTGCTCAGATATTAAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGTGTTATGTTTACACAATGGAATACTGCTCAGATATTAAAAAC  350

seq1  AACTTCATGAAATTTGCAGGCAAATGGGTGGAAATTGAGAATATCATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATGAAATTTGCAGGCAAATGGGTGGAAATTGAGAATATCATACT  400

seq1  GAGTGAAGTGACTCAGTCACAAAAGAACACACATGTTATGTACTTACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAGTGACTCAGTCACAAAAGAACACACATGTTATGTACTTACTGA  450

seq1  TAAGTTTATATTAGCCCAAAAGTTTGGAATACCCAAGATTCAGCTCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTATATTAGCCCAAAAGTTTGGAATACCCAAGATTCAGCTCCCTT  500

seq1  ACTTTTTATGAGCTCTCTTATCAATGTTGTCCTATGTCTTTTACTCTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTATGAGCTCTCTTATCAATGTTGTCCTATGTCTTTTACTCTCGG  550

seq1  AAGTTAATCCCTGTTGCCTGTCAACACTTTTGCTTTACCAGAGTGCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATCCCTGTTGCCTGTCAACACTTTTGCTTTACCAGAGTGCTCCA  600

seq1  CTTACAGAGGTGTTCCTCACTGCCTCCTGTAGTCTAGCCTTCACATTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGAGGTGTTCCTCACTGCCTCCTGTAGTCTAGCCTTCACATTAGG  650

seq1  TGCCCTTTTGCCTGGGATGCTGGTCAGGAACCATTACTGGGGAAGTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTTGCCTGGGATGCTGGTCAGGAACCATTACTGGGGAAGTGAAG  700

seq1  ATGATTATAGAAGGGCAGCAAGAAGATGCAAGAAACAGAGATAGGAGGGC  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGATTATAGAAAGGCAGCAAGAAGATGCAAGAAACAGAGATAGGAGGGC  750

seq1  TGCCTGTGGATATCCTGCCAGTGAGCAAGTGCATTTTCTCAGTGTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGGATATCCTGCCAGTGAGCAAGTGCATTTTCTCAGTGTCTTTC  800

seq1  AAAGGCAAGCAACACAGATCAAGTCCAATTCTGGGAAG-ATAATCAATGA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGGCAAGCAACACAGATCAAGTCCAATTCTGGGAAGAATAATCAATGA  850

seq1  CTACAAATGCTTACCTGCCAAATTTATCATACATTTGAATCTATGTTTGA  899
      |||| |||||||||||||| ||||||||||||||||||||||||| ||||
seq2  CTAC-AATGCTTACCTGCC-AATTTATCATACATTTGAATCTATG-TTGA  897

seq1  CTAATGTCATTTCATTCAGGCTAAGA-GAG-TTTCTCAAGGAT-ATACTC  946
      |||||||||||||||||||||||||| ||| |||||| ||||| ||||||
seq2  CTAATGTCATTTCATTCAGGCTAAGAGGAGTTTTCTC-AGGATAATACTC  946

seq1  ATAAGC--AGAGGAACTTAGCTGGGTATAATGC-ACATCATAAAA-GCAA  992
      ||||||   ||||||||||||||||||| |||| ||||||||||| ||||
seq2  ATAAGCCAGGAGGAACTTAGCTGGGTAT-ATGCAACATCATAAAAGGCAA  995

seq1  AGGATG-TTGGCAG-ACTCATTCATGATTAATCAAAAGCAAGAAGTCAAC  1040
      || ||| ||||||| ||||||||||||||||||  |||| || ||||| |
seq2  AGAATGTTTGGCAGAACTCATTCATGATTAATC--AAGCCAGGAGTCATC  1043

seq1  CTAATTAACTCTGGAAATC-CTCCCCACAAA  1070
      |||||| |||||||||  | ||||| |||||
seq2  CTAATT-ACTCTGGAATCCTCTCCCAACAAA  1073