BAC Information

Click to search

BAC

Clone NameB6Ng01-260E01
Chromosome19 (Build37)3 (Build37)
Map Location 22,171,951 - 22,172,466127,547,356 - 127,548,461
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneTrpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260E01.bB6Ng01-260E01.g
ACCGA065220GA065221
length1,1451,092
definitionB6Ng01-260E01.b B6Ng01-260E01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,171,951 - 22,172,466)(127,547,356 - 127,548,461)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaaaggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaagttcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgttaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagccaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcgtgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctattggatggatcacaggctcccaa
tggaggagctagagaaagtagccagagctaaagggatctgcaaccctata
gtggacacatatgactacagtaccccgagctctgactctagctgcatata
tatcaaagatgcttgtcgcatcactgaagagagtccatgaactgccactt
atatggccagttacaggaacacagtaaaagggatggtggccaggg
gaattctcccagcttgtgtttactgaaaaagtgttcttctttgtctttgt
tttttctgaaagctatggacagcccccatcagtctcctctccctgcccta
ttcatgactgcagccctttagagacatattgctgtgctttcttttgttta
ggagtgtgtttttgttttgtttttctgggtcaggatccagccaggaagca
tgctagcaagtgctcagctctgaagtggtactgccagcccctcagacact
gttctttctttgtctccctatgtggttttgttgtgggtttgttcttgtta
cctttttcatctctttgttttcatcagcttcactgttacccgccagcccg
cctgccagggtgtagattctttgtatttatcctctcagagactctcgagt
gttcttaaatgtgtggcttggtgttttaccaaatagcaatcattctctgc
tttgaatatggtcgtgctcacctgtaatccctgcgctcgggagcagaggc
agaggctggagactcaggcattcaaaggccatttcttctaccgacagaca
gagttcaagaccagcctgcttatacgagttcttgattgggaaaaaaaaga
ctaaactaaaaggtaaaacaaagccccatttactccccccccccccatta
ttctcaaacattcttttctatccagttctcccttcctcttccggagctca
agcacaggttccctgctatctgacatggcctccggctgcttccatacaca
atttccctcgtctgtccatttgctcacttattttgcaatgaactgctttc
aagggaattactcctgtatgttttccctctgcagtccgctgggaagctca
actgatatgttccctgtgctcttagaagaaaaatcacagtcagttcttgc
ttccatttgtttgctttgtagcgtttctatttctcctcagtagcatgtat
cttacctacagtgccacgtggtcacatgctgtagcagctcttctgttcaa
cccttgtcagagtctagtagcagttctgttctcaaaggccacttttactg
ctacgtttgctcttcatgacgcatcgtctactatttttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22171951_22172466
seq2: B6Ng01-260E01.b_989_1187 (reverse)

seq1  CCCTGGCCACCATCCCTGGGATTACCATTAGTCGGGCAGGCAAGAAAGAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTATTAGAAGGTCAAAAAAAAAAATGTTTCAAGATAATGTTGAGGGAAAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTATAGGCATAGCAAGATGTTCAGCTGCCAGTGTTGCAGGTTTCCAAGTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTCATTCATAGAACCTTGAGTTATTCATTTAGTGTTTTGCTGATTATTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACCAAAAGTCCCCCATACCCACCCATCCCCACTCTCCTACCCACCCACTC  300
                                         |||  |||||     
seq2  ----------------------------------CCCTGGCCACC----A  12

seq1  CCCCTTTTTGGAAATGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCG  350
       |||||||     |  | |||  ||||||   || |||||||    ||  
seq2  TCCCTTTT-----ACTGTGTT--CCTGTAACTGGCCATATAA---GTGGC  52

seq1  TGTCCAATGGGCCTCTCTTCCAGTGATGGCCGACTAGGCCATCTTTTGAT  400
       || ||   || ||||||| ||||||||  |||| ||  |||| ||||||
seq2  AGTTCA--TGGACTCTCTT-CAGTGATG--CGACAAG--CATC-TTTGAT  94

seq1  ACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATG  450
      | |||||||||||||||| |||||| ||||||||||  ||| |||||   
seq2  ATATATGCAGCTAGAGTC-AGAGCT-CGGGGTACTG--TAG-TCATA---  136

seq1  TTTTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCT  500
      | | |||| |||||||||||||||||||||||||||  ||| ||||||||
seq2  TGTGTCCA-CTATAGGGTTGCAGATCCCTTTAGCTC--TGGCTACTTTCT  183

seq1  CTAGCTCCTCCATTGG  516
      ||||||||||||||||
seq2  CTAGCTCCTCCATTGG  199

seq1: chr3_127547356_127548461
seq2: B6Ng01-260E01.g_65_1156 (reverse)

seq1  TTTTAAAAATATGTAGAAAGGATGCCCTCATGGAAGAGCAAACGTAGGCA  50
      ||||||||||| ||||  | |||| | |||| |||||||||||||| |||
seq2  TTTTAAAAATA-GTAG--ACGATG-CGTCAT-GAAGAGCAAACGTA-GCA  44

seq1  GTAAAAGTGGCCTTTGAG-ACAGACCTTGCTACTAGACTCTGACAAGGGG  99
      |||||||||||||||||| ||||| | ||||||||||||||||||| |||
seq2  GTAAAAGTGGCCTTTGAGAACAGAAC-TGCTACTAGACTCTGACAA-GGG  92

seq1  TTTGACAG-AGAGCTGCTACAGCCATGTGAACCAACGTGGGCACTGTAGG  148
      ||  |||| ||||||||||||| |||||||  | |||| |||||||||||
seq2  TTGAACAGAAGAGCTGCTACAG-CATGTGA--CCACGT-GGCACTGTAGG  138

seq1  TTAAGATACATGCTACCTGAGGGAGAAATAGAAACGCTACAAAGCAAACA  198
       |||||||||||||| |||| |||||||||||||||||||||||||||||
seq2  -TAAGATACATGCTA-CTGA-GGAGAAATAGAAACGCTACAAAGCAAACA  185

seq1  AATGGGAAGCAAGAACTGACTGTGATTTTTCTTCTAAGAGCACAGGGAAC  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAT-GGAAGCAAGAACTGACTGTGATTTTTCTTCTAAGAGCACAGGGAAC  234

seq1  ATATCAGTTGAGCTTCCCAGCGGACTGCAGAGGGAAAACATACAGGAGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGTTGAGCTTCCCAGCGGACTGCAGAGGGAAAACATACAGGAGTA  284

seq1  ATTCCCTTGAAAGCAGTTCATTGCAAAATAAGTGAGCAAATGGACAGACG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTGAAAGCAGTTCATTGCAAAATAAGTGAGCAAATGGACAGACG  334

seq1  AGGGAAATTGTGTATGGAAGCAGCCGGAGGCCATGTCAGATAGCAGGGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATTGTGTATGGAAGCAGCCGGAGGCCATGTCAGATAGCAGGGAA  384

seq1  CCTGTGCTTGAGCTCCGGAAGAGGAAGGGAGAACTGGATAGAAAAGAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTTGAGCTCCGGAAGAGGAAGGGAGAACTGGATAGAAAAGAATG  434

seq1  TTTGAGAATAATGGGGGGGGGGGGAGTAAATGGGGCTTTGTTTTACCTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAATAATGGGGGGGGGGGGAGTAAATGGGGCTTTGTTTTACCTTT  484

seq1  TAGTTTAGTCTTTTTTTTCCCAATCAAGAACTCGTATAAGCAGGCTGGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAGTCTTTTTTTTCCCAATCAAGAACTCGTATAAGCAGGCTGGTC  534

seq1  TTGAACTCTGTCTGTCGGTAGAAGAAATGGCCTTTGAATGCCTGAGTCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCTGTCTGTCGGTAGAAGAAATGGCCTTTGAATGCCTGAGTCTC  584

seq1  CAGCCTCTGCCTCTGCTCCCGAGCGCAGGGATTACAGGTGAGCACGACCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTGCCTCTGCTCCCGAGCGCAGGGATTACAGGTGAGCACGACCA  634

seq1  TATTCAAAGCAGAGAATGATTGCTATTTGGTAAAACACCAAGCCACACAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAGCAGAGAATGATTGCTATTTGGTAAAACACCAAGCCACACAT  684

seq1  TTAAGAACACTCGAGAGTCTCTGAGAGGATAAATACAAAGAATCTACACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACACTCGAGAGTCTCTGAGAGGATAAATACAAAGAATCTACACC  734

seq1  CTGGCAGGCGGGCTGGCGGGTAACAGTGAAGCTGATGAAAACAAAGAGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGCGGGCTGGCGGGTAACAGTGAAGCTGATGAAAACAAAGAGAT  784

seq1  GAAAAAGGTAACAAGAACAAACCCACAACAAAACCACATAGGGAGACAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGTAACAAGAACAAACCCACAACAAAACCACATAGGGAGACAAA  834

seq1  GAAAGAACAGTGTCTGAGGGGCTGGCAGTACCACTTCAGAGCTGAGCACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACAGTGTCTGAGGGGCTGGCAGTACCACTTCAGAGCTGAGCACT  884

seq1  TGCTAGCATGCTTCCTGGCTGGATCCTGACCCAGAAAAACAAAACAAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCATGCTTCCTGGCTGGATCCTGACCCAGAAAAACAAAACAAAAA  934

seq1  CACACTCCTAAACAAAAGAAAGCACAGCAATATGTCTCTAAAGGGCTGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCCTAAACAAAAGAAAGCACAGCAATATGTCTCTAAAGGGCTGCA  984

seq1  GTCATGAATAGGGCAGGGAGAGGAGACTGATGGGGGCTGTCCATAGCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAATAGGGCAGGGAGAGGAGACTGATGGGGGCTGTCCATAGCTTT  1034

seq1  CAGAAAAAACAAAGACAAAGAAGAACACTTTTTCAGTAAACACAAGCTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAACAAAGACAAAGAAGAACACTTTTTCAGTAAACACAAGCTGG  1084

seq1  GAGAATTC  1106
      ||||||||
seq2  GAGAATTC  1092