BAC Information

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BAC

Clone NameB6Ng01-260F05
Chromosome3 (Build37)
Map Location 107,393,770 - 107,538,746
singlet/doubletdoublet
Overlap geneAlx3, 6330569M22Rik, Ahcyl1
Upstream geneLOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b
Downstream geneCsf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260F05.bB6Ng01-260F05.g
ACCGA065276GA065277
length9641,134
definitionB6Ng01-260F05.b B6Ng01-260F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,538,215 - 107,538,746)(107,393,770 - 107,394,914)
sequence
gaattccaggacagccagggctacacagagaaaccctgcctcaaaattaa
ttaattaattaagaaaaatatttgaaaactttcttaatgtgaataaagat
tttagtctatacatataagctcagcatactcgaaggatgataagctcaaa
gcaatccagacctagaaccatcatcataacttctgaaaaacagacttaac
agaagaaaaaggctctttcagtaccaagatcctctgtcaggttagctgtt
gcgcccacctcagccggcaaggaagacaaaacactgttggattcttctca
acagcctttattgcaggaacgcctcgatgctgctacggggaccccgggca
cccagggaggtctgcttatatgcaccccagcacagggaaaggcttcgtgt
cctcctgggataggttgaactgctgtcacctaattagcatgtacccgctt
gggaggggttggcgcctgcgcagtggtgttgtttatgacaaaggcacacc
cgaaaccggcgccatcttagagttggcttcctacagttagcagctgattt
tcttatctcagagaggctggaatatagtaagatggcatatttggaattct
gagaggaaaagactgtcaaccaacaactctgtgcccatcaaaattagtct
tcaaactgaacaaattaagatagtcgcaaaaaacagactttattaccaag
ccaattttatttttaagaaatacatagggagttttccaggagcaaatgaa
agtacactaaatagtaaattaaaaccatatgaaaagataaaggagtcagt
aaggataatgacaggggtaaatataaaatgcattacacaattttcctatt
taacttagaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaa
aggagttcccaatgcttgcaccaccaccaaagagtggggatgggaattgg
gttggggtggggga
gaattcacatatgctcacacaaaaacggcaagtctgatgtattatctcgg
atcctctaaacacccacactacaggcgccactctacctagaatatatata
ttcatatatacatatctattcatatatacatatatatgaaatgtatgttc
aatggtgtatatatacatatatgcatatatatatatatatatatacatat
ataatgtgtgtgtttaaaggtggatctaggcttaagaaacatctgtgtaa
acactagttcactcagttcagtaaagctaaccaaagaatcattcctcaga
cttttccagtatagaaacttaggtatggagaggtttcatggcttttcaat
caaacacatcaaattggtagagaaagaggggggaaaaagttcttaaactc
ccagaaatttcactctaaatcataggattcagcttgtattgttagaacct
cgtcaaagatcctggtttccacaatgcaaacctccctttaaaatatcatt
catgggcgaggagcaccggatcttaaggtttatttaccattccttagcct
gaccttccaggaagaatgtagctaatgagaaacaatccacttgggctccc
caacccaggattttcataaggatcaacttagggtttcagcgtttaataga
gcaagggcaacgctcgccatcgtcccttccacagcaaaagcaggcaacag
gaaggcagttttgtttatattaagaaaatctcaaacgcaaggctacattt
gtaccattgcctggctcctcttggatacccacagatggatattcaccttc
atgtggtggtcagagggatatagaaaataaagggaaaaatatagagggaa
ctggtatttccctgatcagagagctgacctagcacttggactagggctgg
aactgggccacactaattcccatccatacaagagctggctgcttcagtcc
agcaagaataacaccaggtaggcgggataacctcttgaatccttgtctca
gctgtcatgagcagaccctcctgggagctgaatgattaaacatcatgata
agttatcatttctattttaaacctgtttgcttaacaaatggcaagaattt
tgaagatttattaattatatattaagtacctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_107538215_107538746
seq2: B6Ng01-260F05.b_474_1006 (reverse)

seq1  TCCCCCACCC---ACCAATTCCCATCCCCACTCTTTTGGTGGTGGTGCAA  47
      ||||||||||    ||||||||||||||||||| ||||||||||||||||
seq2  TCCCCCACCCCAACCCAATTCCCATCCCCACTC-TTTGGTGGTGGTGCAA  49

seq1  GCATTGGGAACTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGGAACTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCT  99

seq1  TTCCTTTCCTAAGTTAAATAGGAAAATTGTGTAATGCATTTTATATTTAC  147
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTT-CTAAGTTAAATAGGAAAATTGTGTAATGCATTTTATATTTAC  148

seq1  CCCTGTCATTATCCTTACTGACTCCTTTATCTTTTCATATGGTTTTAATT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCATTATCCTTACTGACTCCTTTATCTTTTCATATGGTTTTAATT  198

seq1  TACTATTTAGTGTACTTTCATTTGCTCCTGGAAAACTCCCTATGTATTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTAGTGTACTTTCATTTGCTCCTGGAAAACTCCCTATGTATTTC  248

seq1  TTAAAAATAAAATTGGCTTGGTAATAAAGTCTGTTTTTTGCGACTATCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAAATTGGCTTGGTAATAAAGTCTGTTTTTTGCGACTATCTT  298

seq1  AATTTGTTCAGTTTGAAGACTAATTTTGATGGGCACAGAGTTGTTGGTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTCAGTTTGAAGACTAATTTTGATGGGCACAGAGTTGTTGGTTG  348

seq1  ACAGTCTTTTCCTCTCAGAATTCCAAATATGCCATCTTACTATATTCCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTTTCCTCTCAGAATTCCAAATATGCCATCTTACTATATTCCAG  398

seq1  CCTCTCTGAGATAAGAAAATCAGCTGCTAACTGTAGGAAGCCAACTCTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGAGATAAGAAAATCAGCTGCTAACTGTAGGAAGCCAACTCTAA  448

seq1  GATGGCGCCGGTTTCGGGTGTGCCTTTGTCATAAACAACACCACTGCGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCGCCGGTTTCGGGTGTGCCTTTGTCATAAACAACACCACTGCGCA  498

seq1  GGCGCCAACCCCTCCCAAGCGGGTACATGCTAATT  532
      |||||||||||||||||||||||||||||||||||
seq2  GGCGCCAACCCCTCCCAAGCGGGTACATGCTAATT  533

seq1: chr3_107393770_107394914
seq2: B6Ng01-260F05.g_64_1197

seq1  GAATTCACATATGCTCACACAAAAACGGCAAGTCTGATGTATTATCTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATATGCTCACACAAAAACGGCAAGTCTGATGTATTATCTCGG  50

seq1  ATCCTCTAAACACCCACACTACAGGCGCCACTCTACCTAGAATATATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTAAACACCCACACTACAGGCGCCACTCTACCTAGAATATATATA  100

seq1  TTCATATATACATATCTATTCATATATACATATATATGAAATGTATGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATATACATATCTATTCATATATACATATATATGAAATGTATGTTC  150

seq1  AATGGTGTATATATACATATATGCATATATATATATATATATATACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTATATATACATATATGCATATATATATATATATATATACATAT  200

seq1  ATAATGTGTGTGTTTAAAGGTGGATCTAGGCTTAAGAAACATCTGTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGTGTGTTTAAAGGTGGATCTAGGCTTAAGAAACATCTGTGTAA  250

seq1  ACACTAGTTCACTCAGTTCAGTAAAGCTAACCAAAGAATCATTCCTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGTTCACTCAGTTCAGTAAAGCTAACCAAAGAATCATTCCTCAGA  300

seq1  CTTTTCCAGTATAGAAACTTAGGTATGGAGAGGTTTCATGGCTTTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAGTATAGAAACTTAGGTATGGAGAGGTTTCATGGCTTTTCAAT  350

seq1  CAAACACATCAAATTGGTAGAGAAAGAGGGGGGAAAAAGTTCTTAAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACATCAAATTGGTAGAGAAAGAGGGGGGAAAAAGTTCTTAAACTC  400

seq1  CCAGAAATTTCACTCTAAATCATAGGATTCAGCTTGTATTGTTAGAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATTTCACTCTAAATCATAGGATTCAGCTTGTATTGTTAGAACCT  450

seq1  CGTCAAAGATCCTGGTTTCCACAATGCAAACCTCCCTTTAAAATATCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAAAGATCCTGGTTTCCACAATGCAAACCTCCCTTTAAAATATCATT  500

seq1  CATGGGCGAGGAGCACCGGATCTTAAGGTTTATTTACCATTCCTTAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCGAGGAGCACCGGATCTTAAGGTTTATTTACCATTCCTTAGCCT  550

seq1  GACCTTCCAGGAAGAATGTAGCTAATGAGAAACAATCCACTTGGGCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCCAGGAAGAATGTAGCTAATGAGAAACAATCCACTTGGGCTCCC  600

seq1  CAACCCAGGATTTTCATAAGGATCAACTTAGGGTTTCAGCGTTTAATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAGGATTTTCATAAGGATCAACTTAGGGTTTCAGCGTTTAATAGA  650

seq1  GCAAGGGCAACGCTCGCCATCGTCCCTTCCACAGCAAAAGCAGGCAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGCAACGCTCGCCATCGTCCCTTCCACAGCAAAAGCAGGCAACAG  700

seq1  GAAGGCAGTTTTGTTTATATTAAGAAAATCTCAAACGCAAGGCTACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGTTTTGTTTATATTAAGAAAATCTCAAACGCAAGGCTACATTT  750

seq1  GTACCATTGCCTGGCTCCTCTTGGATACCCACAGATGGATATTCACCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATTGCCTGGCTCCTCTTGGATACCCACAGATGGATATTCACCTTC  800

seq1  ATGTGGTGGTCAGAGGGATATAGAAAATAAAGGGAAAAATATAGAGGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGGTCAGAGGGATATAGAAAATAAAGGGAAAAATATAGAGGGAA  850

seq1  CTGGTATTTCCCTGATCAGAGAGCTGACCTAGCACTTGGACTAGGGGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGGTATTTCCCTGATCAGAGAGCTGACCTAGCACTTGGACTA-GGGCTG  899

seq1  GAACTGGGCCACACTAATTCCCATCCATACAAGAGCTGGGCTGCTTCAGT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAACTGGGCCACACTAATTCCCATCCATACAAGAGCT-GGCTGCTTCAGT  948

seq1  CCAGCAAAGAATAAACACCAGGTAGGCGGGGATAACCTC-TGAATCCTTG  999
      ||||| |||||| |||||||||||||| ||||||||||| ||||||||||
seq2  CCAGC-AAGAAT-AACACCAGGTAGGC-GGGATAACCTCTTGAATCCTTG  995

seq1  TCTCAGCTGTCATGAGCAGACCCTCCTGGGAGCTGAATGGATTAAACAAT  1049
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  TCTCAGCTGTCATGAGCAGACCCTCCTGGGAGCTGAAT-GATTAAAC-AT  1043

seq1  CATTGATAAAAGTATCATTTCTATTTTAAAACTTGTTTTGCTTAACAAAT  1099
      || |||| ||  |||||||||||||||||| ||   ||||||||||||||
seq2  CA-TGAT-AAGTTATCATTTCTATTTTAAACCT--GTTTGCTTAACAAAT  1089

seq1  GGAAAGATTTTTTAAAAGATTTATT-ATTATATA-TAAGTACACTGTA  1145
      || |||| ||||   |||||||||| |||||||| ||||||| |||||
seq2  GGCAAGAATTTT--GAAGATTTATTAATTATATATTAAGTAC-CTGTA  1134